Wall clock time and date at job start Tue Mar 31 2020 07:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99960 * 2 1 4 4 H 1.48505 * 109.46867 * 239.99947 * 3 2 1 5 5 H 1.48499 * 109.47101 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46896 * 119.99990 * 3 2 1 7 7 C 1.37882 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00072 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46750 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46866 * 54.99954 * 11 10 9 13 13 N 1.46899 * 109.47004 * 295.00080 * 11 10 9 14 14 C 1.46899 * 111.00008 * 155.00274 * 13 11 10 15 15 C 1.50702 * 109.47316 * 179.97438 * 14 13 11 16 16 N 1.28135 * 126.03396 * 0.02562 * 15 14 13 17 17 O 1.41381 * 113.24380 * 180.21544 * 16 15 14 18 18 C 1.44253 * 107.50676 * 342.68853 * 17 16 15 19 19 C 1.51684 * 125.76914 * 180.02562 * 15 14 13 20 20 C 1.50700 * 109.46981 * 174.99812 * 11 10 9 21 21 C 1.38244 * 119.99759 * 79.72708 * 20 11 10 22 22 C 1.38236 * 119.99691 * 179.78481 * 21 20 11 23 23 C 1.38235 * 119.99901 * 0.44378 * 22 21 20 24 24 C 1.38230 * 120.00055 * 359.81160 * 23 22 21 25 25 C 1.38230 * 120.00277 * 260.00087 * 20 11 10 26 26 H 0.96998 * 120.00000 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47456 * 60.00205 * 9 7 2 28 28 H 1.08996 * 109.47444 * 300.00231 * 9 7 2 29 29 H 1.08997 * 109.46860 * 60.00327 * 10 9 7 30 30 H 1.08999 * 109.47035 * 299.99713 * 10 9 7 31 31 H 1.00901 * 111.00512 * 31.04766 * 13 11 10 32 32 H 1.09000 * 109.47323 * 60.00003 * 14 13 11 33 33 H 1.08999 * 109.47120 * 299.99867 * 14 13 11 34 34 H 1.08998 * 111.01587 * 267.04493 * 18 17 16 35 35 H 1.09005 * 111.01370 * 143.16965 * 18 17 16 36 36 H 1.09002 * 110.80846 * 77.04581 * 19 15 14 37 37 H 1.09004 * 110.80474 * 313.73573 * 19 15 14 38 38 H 1.07994 * 119.99883 * 359.97438 * 21 20 11 39 39 H 1.07998 * 119.99645 * 180.27090 * 22 21 20 40 40 H 1.08003 * 119.99774 * 179.82778 * 23 22 21 41 41 H 1.08000 * 119.99905 * 179.97438 * 24 23 22 42 42 H 1.08004 * 119.99802 * 359.97438 * 25 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 1 0.7884 -5.0075 -0.8388 13 7 0.7281 -5.1177 1.2583 14 6 -0.4305 -6.0047 1.0879 15 6 -1.1754 -6.1145 2.3933 16 7 -0.8627 -5.5322 3.4910 17 8 -1.7485 -5.8289 4.5521 18 6 -2.9548 -6.3673 3.9727 19 6 -2.4278 -6.9360 2.6330 20 6 2.4549 -6.1299 -0.1196 21 6 3.1525 -6.5658 0.9915 22 6 4.0432 -7.6170 0.8797 23 6 4.2432 -8.2263 -0.3449 24 6 3.5495 -7.7869 -1.4569 25 6 2.6555 -6.7386 -1.3443 26 1 -0.4850 0.8400 -0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6246 -2.5563 0.8919 29 1 2.8719 -3.6035 0.8927 30 1 2.8719 -3.6051 -0.8873 31 1 0.4435 -4.2139 1.6052 32 1 -0.0892 -6.9932 0.7805 33 1 -1.0923 -5.5952 0.3248 34 1 -3.6907 -5.5816 3.8015 35 1 -3.3689 -7.1591 4.5972 36 1 -2.1842 -7.9940 2.7304 37 1 -3.1525 -6.7792 1.8340 38 1 2.9993 -6.0871 1.9473 39 1 4.5850 -7.9604 1.7486 40 1 4.9412 -9.0457 -0.4328 41 1 3.7060 -8.2627 -2.4138 42 1 2.1135 -6.3954 -2.2132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307798708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:28 Heat of formation + Delta-G solvation = 36.072565 kcal Electronic energy + Delta-G solvation = -22313.206262 eV Core-core repulsion = 19066.644666 eV Total energy + Delta-G solvation = -3246.561596 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.98962 -39.23298 -36.69520 -33.98445 -32.84216 -31.05758 -30.62799 -30.45548 -30.31543 -26.91632 -25.01718 -23.55568 -23.08377 -22.26457 -20.97667 -19.84610 -19.45316 -16.86551 -16.54307 -16.49301 -16.04746 -15.49076 -15.13469 -14.90634 -14.50879 -14.45293 -13.92249 -13.58193 -13.27294 -13.09286 -12.89103 -12.59208 -12.44966 -12.23766 -12.14311 -11.95284 -11.65950 -11.51557 -10.98279 -10.89961 -10.80464 -10.67668 -10.48962 -10.44716 -9.81760 -9.44282 -9.33721 -9.17258 -8.67188 -8.37589 -8.35347 -8.18435 -6.01641 -4.03637 1.59567 1.66937 1.90879 3.18118 3.34234 3.38394 3.41352 3.81207 4.05813 4.46082 4.49420 4.55171 4.70026 4.73161 5.08566 5.15677 5.19913 5.28014 5.34433 5.36655 5.38654 5.40252 5.44807 5.49889 5.72796 5.77134 5.86111 5.95800 5.99435 6.20462 6.31444 6.43658 6.65020 6.74022 6.81190 6.87711 6.99942 7.26060 7.30205 7.53907 7.59303 7.71935 7.79158 7.96703 8.39925 9.02228 9.60782 11.09585 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.008794 B = 0.005440 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3183.335147 B = 5145.455083 C = 7734.497787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C 0.125 3.875 12 H 0.052 0.948 13 N -0.678 5.678 14 C 0.128 3.872 15 C 0.080 3.920 16 N -0.262 5.262 17 O -0.211 6.211 18 C 0.012 3.988 19 C -0.151 4.151 20 C -0.064 4.064 21 C -0.086 4.086 22 C -0.129 4.129 23 C -0.132 4.132 24 C -0.127 4.127 25 C -0.121 4.121 26 H 0.261 0.739 27 H 0.013 0.987 28 H 0.016 0.984 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.365 0.635 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.130 0.870 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.197 -18.561 0.346 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.146 4.146 11 C 0.015 3.985 12 H 0.069 0.931 13 N -0.313 5.313 14 C -0.003 4.003 15 C -0.115 4.115 16 N -0.004 5.004 17 O -0.228 6.228 18 C -0.066 4.066 19 C -0.191 4.191 20 C -0.065 4.065 21 C -0.104 4.104 22 C -0.147 4.147 23 C -0.150 4.150 24 C -0.145 4.145 25 C -0.140 4.140 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.188 0.812 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.148 0.852 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.247 -18.216 1.362 18.309 hybrid contribution -0.935 0.870 -0.919 1.574 sum -2.182 -17.346 0.443 17.488 Atomic orbital electron populations 1.69938 1.06058 1.26745 1.50768 1.25002 0.94831 0.99250 0.95203 0.86657 0.79601 0.83094 0.78666 1.20263 1.21325 1.20163 1.21156 0.93045 0.90870 1.50695 0.92654 1.19137 0.93968 0.91655 0.96797 1.21837 0.99273 0.91880 1.01604 1.20602 0.93575 0.94041 0.90257 0.93051 1.60397 1.22664 1.19189 1.29067 1.20511 0.91111 0.99930 0.88711 1.26428 0.95504 0.93333 0.96206 1.78283 1.11012 1.14845 0.96283 1.91270 1.23896 1.82690 1.24958 1.24090 0.90072 0.98827 0.93658 1.23094 0.95470 1.01699 0.98795 1.20039 0.97322 0.96042 0.93056 1.21100 0.94419 0.95645 0.99246 1.21165 0.99065 0.97157 0.97322 1.21044 1.00292 1.00414 0.93260 1.21003 0.97550 0.97693 0.98270 1.21048 0.99234 0.96439 0.97230 0.92965 0.96858 0.96540 0.92021 0.92335 0.81160 0.88487 0.92020 0.90590 0.88075 0.88244 0.88131 0.85164 0.86671 0.86884 0.86703 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.53 4.80 -27.88 -0.13 0.40 16 10 C -0.11 -2.17 4.72 -26.73 -0.13 -2.29 16 11 C 0.12 2.03 2.24 -68.86 -0.15 1.88 16 12 H 0.05 0.82 7.66 -51.93 -0.40 0.43 16 13 N -0.68 -10.86 5.32 -109.22 -0.58 -11.45 16 14 C 0.13 1.65 6.09 -4.98 -0.03 1.62 16 15 C 0.08 1.06 7.24 -78.37 -0.57 0.50 16 16 N -0.26 -4.38 11.96 35.87 0.43 -3.95 16 17 O -0.21 -3.33 12.52 -11.36 -0.14 -3.47 16 18 C 0.01 0.12 8.24 38.10 0.31 0.43 16 19 C -0.15 -1.42 7.06 -26.46 -0.19 -1.61 16 20 C -0.06 -0.95 4.71 -104.62 -0.49 -1.44 16 21 C -0.09 -1.26 9.32 -39.58 -0.37 -1.63 16 22 C -0.13 -1.66 10.05 -39.58 -0.40 -2.06 16 23 C -0.13 -1.57 10.05 -39.59 -0.40 -1.97 16 24 C -0.13 -1.53 10.05 -39.59 -0.40 -1.93 16 25 C -0.12 -1.63 9.67 -39.59 -0.38 -2.01 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.02 0.43 6.42 -51.93 -0.33 0.10 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.36 6.83 6.32 -39.29 -0.25 6.58 16 32 H 0.10 1.11 8.00 -51.93 -0.42 0.70 16 33 H 0.06 0.74 8.06 -51.93 -0.42 0.33 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.13 2.03 7.73 -52.49 -0.41 1.63 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.11 1.08 8.06 -52.48 -0.42 0.65 16 41 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.12 1.44 8.04 -52.48 -0.42 1.01 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -31.75 352.21 -9.42 -41.17 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.41 Total: 4.97 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -3.73 Total: -23.40 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.58 Total: -41.29 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: -0.14 Total: -3.47 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.75 -9.42 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307798708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.239 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds