Wall clock time and date at job start Tue Mar 31 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46911 * 2 1 4 4 C 1.53001 * 109.47140 * 240.00176 * 2 1 3 5 5 C 1.50693 * 109.47075 * 119.99895 * 2 1 3 6 6 C 1.38234 * 120.00126 * 60.00356 * 5 2 1 7 7 C 1.38231 * 120.00415 * 179.97438 * 6 5 2 8 8 C 1.38237 * 120.00182 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00373 * 179.97438 * 8 7 6 10 10 C 1.50693 * 115.55139 * 325.58269 * 9 8 7 11 11 O 1.21211 * 120.00335 * 214.33047 * 10 9 8 12 12 O 1.34313 * 119.99793 * 34.33187 * 10 9 8 13 13 C 1.34916 * 116.99956 * 180.02562 * 12 10 9 14 14 H 1.08000 * 120.00480 * 359.97438 * 13 12 10 15 15 C 1.38755 * 119.99909 * 180.02562 * 13 12 10 16 16 N 1.31441 * 120.00431 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99779 * 179.72403 * 15 13 12 18 18 H 1.48497 * 109.47322 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47056 * 119.99719 * 17 15 13 20 20 H 1.48501 * 109.47099 * 239.99749 * 17 15 13 21 21 C 1.52998 * 117.51706 * 111.28759 * 9 8 7 22 22 C 1.53001 * 117.49645 * 179.91743 * 9 8 7 23 23 C 1.38239 * 119.99511 * 0.25648 * 8 7 6 24 24 C 1.38237 * 120.00089 * 359.49242 * 23 8 7 25 25 H 1.08999 * 109.47568 * 300.00284 * 1 2 3 26 26 H 1.09001 * 109.47308 * 59.99789 * 1 2 3 27 27 H 1.09005 * 109.47051 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47224 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47307 * 300.00212 * 3 2 1 30 30 H 1.09004 * 109.47546 * 59.99854 * 3 2 1 31 31 H 1.08997 * 109.46859 * 299.99520 * 4 2 1 32 32 H 1.09001 * 109.46992 * 59.99841 * 4 2 1 33 33 H 1.08998 * 109.47148 * 179.97438 * 4 2 1 34 34 H 1.07999 * 119.99787 * 359.97438 * 6 5 2 35 35 H 1.08003 * 120.00858 * 180.02562 * 7 6 5 36 36 H 0.97000 * 120.00093 * 179.97438 * 16 15 13 37 37 H 1.09004 * 117.50057 * 214.96677 * 21 9 8 38 38 H 1.08999 * 117.49970 * 359.97438 * 21 9 8 39 39 H 1.08999 * 117.50415 * 359.97129 * 22 9 8 40 40 H 1.08994 * 117.50051 * 144.99913 * 22 9 8 41 41 H 1.08000 * 120.00120 * 179.72410 * 23 8 7 42 42 H 1.08004 * 120.00032 * 180.24542 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.6984 -2.0338 1.4492 7 6 2.1596 -2.6856 2.5776 8 6 2.9543 -2.0139 3.4876 9 6 3.4566 -2.7243 4.7180 10 6 2.5171 -3.7435 5.3091 11 8 2.4768 -3.9063 6.5096 12 8 1.7244 -4.4716 4.5057 13 6 0.9068 -5.3659 5.0990 14 1 0.9105 -5.4710 6.1739 15 6 0.0618 -6.1514 4.3281 16 7 0.0575 -6.0240 3.0199 17 14 -1.0647 -7.3951 5.1490 18 1 -0.8658 -7.3480 6.6198 19 1 -2.4780 -7.0693 4.8295 20 1 -0.7456 -8.7569 4.6501 21 6 4.9567 -3.0119 4.8053 22 6 4.3334 -1.9268 5.6857 23 6 3.2834 -0.6887 3.2718 24 6 2.8265 -0.0384 2.1408 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.0772 -2.5586 0.7385 35 1 1.8991 -3.7198 2.7483 36 1 -0.5329 -6.5734 2.4809 37 1 5.2642 -3.9384 5.2903 38 1 5.5807 -2.6877 3.9724 39 1 4.5473 -0.8886 5.4321 40 1 4.2307 -2.1395 6.7497 41 1 3.9005 -0.1625 3.9850 42 1 3.0869 0.9958 1.9702 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337346155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:16 Heat of formation + Delta-G solvation = -40.819577 kcal Electronic energy + Delta-G solvation = -23081.160144 eV Core-core repulsion = 19798.971503 eV Total energy + Delta-G solvation = -3282.188641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06342 -38.98194 -37.20665 -35.64523 -34.49975 -32.14576 -30.65713 -29.38558 -27.33592 -27.16846 -25.96384 -24.05146 -22.53025 -22.09876 -21.33924 -19.38647 -18.70784 -17.85372 -17.12675 -15.87209 -15.17316 -14.86536 -14.58304 -14.40128 -14.21815 -14.17213 -14.07550 -13.46979 -13.06834 -12.93846 -12.62268 -12.56635 -12.00831 -11.93345 -11.71580 -11.63916 -11.49188 -11.32349 -11.22168 -11.00135 -10.90641 -10.56545 -10.54509 -10.39981 -10.32256 -10.14099 -9.92330 -9.62100 -9.08538 -8.58351 -8.37068 -7.94849 -6.42818 -4.08780 1.72912 1.94878 3.06565 3.19336 3.26323 3.35814 3.87209 4.12388 4.39159 4.48177 4.71082 4.86878 4.92137 5.06193 5.10921 5.14132 5.35434 5.42907 5.47079 5.55475 5.59844 5.66601 5.77325 5.79439 5.85642 5.89158 5.94128 5.96536 6.05541 6.12182 6.15659 6.18039 6.37146 6.39562 6.40189 6.49799 6.66678 6.72436 6.97119 7.21260 7.27688 7.40374 7.63563 7.96608 8.70067 9.07795 9.85253 10.75368 Molecular weight = 288.15amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.005469 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.292773 B = 5119.001500 C = 6682.397520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.027 4.027 3 C -0.141 4.141 4 C -0.138 4.138 5 C -0.080 4.080 6 C -0.111 4.111 7 C -0.087 4.087 8 C -0.053 4.053 9 C -0.082 4.082 10 C 0.436 3.564 11 O -0.552 6.552 12 O -0.204 6.204 13 C -0.384 4.384 14 H 0.095 0.905 15 C 0.045 3.955 16 N -0.864 5.864 17 Si 0.940 3.060 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.145 4.145 22 C -0.148 4.148 23 C -0.120 4.120 24 C -0.133 4.133 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.120 0.880 35 H 0.166 0.834 36 H 0.269 0.731 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.250 11.862 -7.180 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.195 4.195 5 C -0.080 4.080 6 C -0.129 4.129 7 C -0.104 4.104 8 C -0.054 4.054 9 C -0.083 4.083 10 C 0.283 3.717 11 O -0.449 6.449 12 O -0.111 6.111 13 C -0.460 4.460 14 H 0.113 0.887 15 C -0.159 4.159 16 N -0.501 5.501 17 Si 0.765 3.235 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.182 4.182 22 C -0.185 4.185 23 C -0.137 4.137 24 C -0.151 4.151 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.138 0.862 35 H 0.183 0.817 36 H 0.079 0.921 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.135 0.865 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.110 11.708 -7.071 14.601 hybrid contribution -0.656 -0.647 0.414 1.010 sum 4.454 11.061 -6.656 13.656 Atomic orbital electron populations 1.21893 0.93891 1.02423 1.01407 1.19451 0.95605 0.94674 0.93020 1.21942 1.01009 0.95334 1.01548 1.21883 1.01070 1.00548 0.95997 1.19764 0.98162 0.94307 0.95721 1.20996 1.00162 0.93802 0.97978 1.21960 0.93683 1.02883 0.91903 1.18871 0.99039 0.93392 0.94054 1.19554 0.91991 0.99622 0.97137 1.21836 0.82022 0.82468 0.85400 1.90546 1.69090 1.68888 1.16395 1.83819 1.44799 1.44258 1.38202 1.21317 1.16724 1.14389 0.93553 0.88730 1.25263 0.97382 0.97844 0.95450 1.69951 1.37204 1.38921 1.03995 0.85649 0.79137 0.79307 0.79389 1.19027 1.20208 1.20207 1.23066 0.91859 1.00910 1.02329 1.23109 1.00826 0.96593 0.97943 1.20924 1.01139 0.93979 0.97696 1.20921 0.99828 0.99596 0.94731 0.92574 0.92776 0.92077 0.92424 0.92775 0.92391 0.92146 0.92767 0.92649 0.86245 0.81677 0.92123 0.88049 0.87928 0.87885 0.87284 0.86468 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.29 37.16 0.31 -1.34 16 2 C -0.03 -0.33 0.85 -155.66 -0.13 -0.46 16 3 C -0.14 -1.42 7.13 37.16 0.27 -1.15 16 4 C -0.14 -1.54 8.29 37.16 0.31 -1.23 16 5 C -0.08 -1.20 4.76 -104.63 -0.50 -1.69 16 6 C -0.11 -1.99 8.71 -39.59 -0.34 -2.33 16 7 C -0.09 -1.81 9.08 -39.58 -0.36 -2.17 16 8 C -0.05 -1.02 5.44 -104.62 -0.57 -1.59 16 9 C -0.08 -1.63 2.50 -156.82 -0.39 -2.02 16 10 C 0.44 11.15 7.41 36.00 0.27 11.41 16 11 O -0.55 -15.23 15.49 -19.05 -0.30 -15.52 16 12 O -0.20 -5.73 6.42 -20.70 -0.13 -5.87 16 13 C -0.38 -11.26 9.64 30.92 0.30 -10.96 16 14 H 0.10 2.83 6.86 -52.49 -0.36 2.47 16 15 C 0.04 1.23 5.49 -17.53 -0.10 1.14 16 16 N -0.86 -24.38 13.67 55.48 0.76 -23.63 16 17 Si 0.94 21.22 29.55 -169.99 -5.02 16.19 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 C -0.14 -2.33 9.94 -26.73 -0.27 -2.60 16 22 C -0.15 -2.37 9.38 -26.73 -0.25 -2.62 16 23 C -0.12 -1.89 9.39 -39.58 -0.37 -2.26 16 24 C -0.13 -1.93 8.98 -39.58 -0.36 -2.28 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.78 7.39 -51.93 -0.38 0.40 16 28 H 0.06 0.55 7.51 -51.93 -0.39 0.16 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.58 7.51 -51.93 -0.39 0.19 16 31 H 0.06 0.72 7.39 -51.93 -0.38 0.33 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.12 2.06 7.10 -52.49 -0.37 1.69 16 35 H 0.17 4.08 5.30 -52.48 -0.28 3.81 16 36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.10 1.33 6.08 -51.93 -0.32 1.02 16 40 H 0.11 1.83 7.67 -51.93 -0.40 1.43 16 41 H 0.12 1.56 5.93 -52.49 -0.31 1.25 16 42 H 0.12 1.41 5.90 -52.48 -0.31 1.11 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -31.53 341.67 -7.72 -39.25 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.99 Total: 6.58 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -2.19 Total: -22.15 kcal Atomic # 7 Polarization: -24.38 SS G_CDS: 0.76 Total: -23.63 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.43 Total: -21.39 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.53 -7.72 -39.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337346155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.573 kcal (2) G-P(sol) polarization free energy of solvation -31.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds