Wall clock time and date at job start Tue Mar 31 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46911 * 2 1 4 4 C 1.53001 * 109.47140 * 240.00176 * 2 1 3 5 5 C 1.50693 * 109.47075 * 119.99895 * 2 1 3 6 6 C 1.38234 * 120.00126 * 60.00356 * 5 2 1 7 7 C 1.38231 * 120.00415 * 179.97438 * 6 5 2 8 8 C 1.38237 * 120.00182 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00373 * 179.97438 * 8 7 6 10 10 C 1.50693 * 115.55139 * 325.58269 * 9 8 7 11 11 O 1.21211 * 120.00335 * 214.33047 * 10 9 8 12 12 O 1.34313 * 119.99793 * 34.33187 * 10 9 8 13 13 C 1.34916 * 116.99956 * 180.02562 * 12 10 9 14 14 H 1.08000 * 120.00480 * 359.97438 * 13 12 10 15 15 C 1.38755 * 119.99909 * 180.02562 * 13 12 10 16 16 N 1.31441 * 120.00431 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99779 * 179.72403 * 15 13 12 18 18 H 1.48497 * 109.47322 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47056 * 119.99719 * 17 15 13 20 20 H 1.48501 * 109.47099 * 239.99749 * 17 15 13 21 21 C 1.52998 * 117.51706 * 111.28759 * 9 8 7 22 22 C 1.53001 * 117.49645 * 179.91743 * 9 8 7 23 23 C 1.38239 * 119.99511 * 0.25648 * 8 7 6 24 24 C 1.38237 * 120.00089 * 359.49242 * 23 8 7 25 25 H 1.08999 * 109.47568 * 300.00284 * 1 2 3 26 26 H 1.09001 * 109.47308 * 59.99789 * 1 2 3 27 27 H 1.09005 * 109.47051 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47224 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47307 * 300.00212 * 3 2 1 30 30 H 1.09004 * 109.47546 * 59.99854 * 3 2 1 31 31 H 1.08997 * 109.46859 * 299.99520 * 4 2 1 32 32 H 1.09001 * 109.46992 * 59.99841 * 4 2 1 33 33 H 1.08998 * 109.47148 * 179.97438 * 4 2 1 34 34 H 1.07999 * 119.99787 * 359.97438 * 6 5 2 35 35 H 1.08003 * 120.00858 * 180.02562 * 7 6 5 36 36 H 0.97000 * 120.00093 * 179.97438 * 16 15 13 37 37 H 1.09004 * 117.50057 * 214.96677 * 21 9 8 38 38 H 1.08999 * 117.49970 * 359.97438 * 21 9 8 39 39 H 1.08999 * 117.50415 * 359.97129 * 22 9 8 40 40 H 1.08994 * 117.50051 * 144.99913 * 22 9 8 41 41 H 1.08000 * 120.00120 * 179.72410 * 23 8 7 42 42 H 1.08004 * 120.00032 * 180.24542 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.6984 -2.0338 1.4492 7 6 2.1596 -2.6856 2.5776 8 6 2.9543 -2.0139 3.4876 9 6 3.4566 -2.7243 4.7180 10 6 2.5171 -3.7435 5.3091 11 8 2.4768 -3.9063 6.5096 12 8 1.7244 -4.4716 4.5057 13 6 0.9068 -5.3659 5.0990 14 1 0.9105 -5.4710 6.1739 15 6 0.0618 -6.1514 4.3281 16 7 0.0575 -6.0240 3.0199 17 14 -1.0647 -7.3951 5.1490 18 1 -0.8658 -7.3480 6.6198 19 1 -2.4780 -7.0693 4.8295 20 1 -0.7456 -8.7569 4.6501 21 6 4.9567 -3.0119 4.8053 22 6 4.3334 -1.9268 5.6857 23 6 3.2834 -0.6887 3.2718 24 6 2.8265 -0.0384 2.1408 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.0772 -2.5586 0.7385 35 1 1.8991 -3.7198 2.7483 36 1 -0.5329 -6.5734 2.4809 37 1 5.2642 -3.9384 5.2903 38 1 5.5807 -2.6877 3.9724 39 1 4.5473 -0.8886 5.4321 40 1 4.2307 -2.1395 6.7497 41 1 3.9005 -0.1625 3.9850 42 1 3.0869 0.9958 1.9702 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337346155.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:15 Heat of formation + Delta-G solvation = -57.003381 kcal Electronic energy + Delta-G solvation = -23081.861926 eV Core-core repulsion = 19798.971503 eV Total energy + Delta-G solvation = -3282.890423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.65333 -40.52731 -38.70334 -37.29774 -36.08412 -34.31713 -31.95023 -30.65259 -28.30839 -28.08151 -27.87373 -25.72675 -23.83907 -23.52978 -22.69837 -20.96282 -20.07879 -19.85175 -18.80434 -17.31014 -16.96694 -16.50734 -16.28217 -15.95280 -15.63253 -15.51892 -15.08871 -14.90527 -14.43597 -14.26840 -14.02106 -13.70667 -13.65324 -13.25051 -13.02831 -12.99467 -12.67090 -12.55343 -12.51096 -12.43942 -12.28353 -12.22231 -11.89512 -11.86112 -11.74352 -11.49053 -11.28433 -11.19602 -11.08306 -10.71070 -9.71186 -9.26703 -8.56102 -6.34905 0.41935 0.61162 1.22346 1.30429 1.48131 1.53413 2.06352 2.58038 2.73759 2.97461 3.04810 3.46716 3.71821 3.80934 3.92768 4.03001 4.16706 4.17948 4.35448 4.36604 4.47178 4.57812 4.66918 4.75452 4.80450 4.84073 4.87505 4.94216 4.97512 5.06809 5.07625 5.10351 5.14052 5.18016 5.23075 5.29416 5.33174 5.46508 5.47383 5.68950 5.79485 5.85230 5.91363 6.21934 6.61175 6.89378 7.74797 8.63797 Molecular weight = 288.15amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.005469 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.292773 B = 5119.001500 C = 6682.397520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.028 4.028 3 C -0.139 4.139 4 C -0.137 4.137 5 C -0.073 4.073 6 C -0.123 4.123 7 C -0.125 4.125 8 C -0.066 4.066 9 C -0.118 4.118 10 C 0.426 3.574 11 O -0.585 6.585 12 O -0.221 6.221 13 C -0.428 4.428 14 H 0.076 0.924 15 C 0.002 3.998 16 N -0.892 5.892 17 Si 1.013 2.987 18 H -0.268 1.268 19 H -0.260 1.260 20 H -0.259 1.259 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.122 4.122 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.278 0.722 37 H 0.092 0.908 38 H 0.136 0.864 39 H 0.147 0.853 40 H 0.097 0.903 41 H 0.153 0.847 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 14.724 -8.118 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 C -0.196 4.196 4 C -0.194 4.194 5 C -0.073 4.073 6 C -0.141 4.141 7 C -0.143 4.143 8 C -0.066 4.066 9 C -0.119 4.119 10 C 0.274 3.726 11 O -0.484 6.484 12 O -0.129 6.129 13 C -0.504 4.504 14 H 0.094 0.906 15 C -0.199 4.199 16 N -0.529 5.529 17 Si 0.832 3.168 18 H -0.192 1.192 19 H -0.184 1.184 20 H -0.183 1.183 21 C -0.164 4.164 22 C -0.157 4.157 23 C -0.129 4.129 24 C -0.140 4.140 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.154 0.846 39 H 0.164 0.836 40 H 0.115 0.885 41 H 0.171 0.829 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.111 14.579 -8.028 17.730 hybrid contribution -0.935 -1.497 0.669 1.888 sum 5.176 13.082 -7.359 15.878 Atomic orbital electron populations 1.21899 0.94051 1.01380 1.02318 1.19550 0.95485 0.96095 0.91691 1.21934 1.01625 0.93266 1.02737 1.21876 1.01215 0.99748 0.96557 1.20113 0.97244 0.92923 0.97036 1.20948 1.00603 0.95423 0.97122 1.21655 0.96824 1.01291 0.94514 1.18862 0.99643 0.94846 0.93275 1.19652 0.92674 1.00230 0.99320 1.23142 0.81695 0.82463 0.85251 1.90490 1.70088 1.70061 1.17727 1.83944 1.45440 1.44692 1.38791 1.21479 1.19088 1.16628 0.93190 0.90616 1.26415 0.98165 0.99177 0.96106 1.70057 1.37807 1.39680 1.05364 0.84635 0.77215 0.76863 0.78049 1.19176 1.18445 1.18291 1.23244 0.89080 1.00951 1.03160 1.23301 0.97211 0.98503 0.96658 1.21243 1.00787 0.92179 0.98658 1.21394 0.98051 1.01079 0.93430 0.93096 0.90396 0.94174 0.91426 0.90962 0.91987 0.93968 0.90565 0.92379 0.87384 0.86728 0.91255 0.88982 0.84632 0.83581 0.88453 0.82946 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.29 71.98 0.60 -2.52 16 2 C -0.03 -0.61 0.85 -52.93 -0.05 -0.66 16 3 C -0.14 -2.16 7.13 71.98 0.51 -1.65 16 4 C -0.14 -2.80 8.29 71.98 0.60 -2.21 16 5 C -0.07 -2.10 4.76 -19.87 -0.09 -2.20 16 6 C -0.12 -4.60 8.71 22.27 0.19 -4.40 16 7 C -0.12 -5.54 9.08 22.27 0.20 -5.34 16 8 C -0.07 -2.53 5.44 -19.87 -0.11 -2.64 16 9 C -0.12 -4.75 2.50 -53.68 -0.13 -4.88 16 10 C 0.43 23.15 7.41 71.23 0.53 23.68 16 11 O -0.58 -34.18 15.49 20.77 0.32 -33.86 16 12 O -0.22 -13.49 6.42 14.89 0.10 -13.39 16 13 C -0.43 -26.91 9.64 67.94 0.66 -26.26 16 14 H 0.08 4.89 6.86 -2.91 -0.02 4.87 16 15 C 0.00 0.14 5.49 84.87 0.47 0.61 16 16 N -0.89 -52.97 13.67 21.62 0.30 -52.67 16 17 Si 1.01 44.70 29.55 68.60 2.03 46.73 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 21 C -0.13 -3.96 9.94 30.59 0.30 -3.65 16 22 C -0.12 -3.59 9.38 30.60 0.29 -3.30 16 23 C -0.11 -3.17 9.39 22.27 0.21 -2.96 16 24 C -0.12 -3.11 8.98 22.27 0.20 -2.91 16 25 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.05 7.39 -2.38 -0.02 1.03 16 28 H 0.07 0.95 7.51 -2.38 -0.02 0.93 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.94 7.51 -2.38 -0.02 0.92 16 31 H 0.04 1.00 7.39 -2.39 -0.02 0.98 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 4.11 7.10 -2.91 -0.02 4.08 16 35 H 0.11 6.29 5.30 -2.91 -0.02 6.27 16 36 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 37 H 0.09 3.01 8.14 -2.38 -0.02 2.99 16 38 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.15 3.05 6.08 -2.39 -0.01 3.03 16 40 H 0.10 3.16 7.67 -2.39 -0.02 3.15 16 41 H 0.15 3.21 5.93 -2.91 -0.02 3.20 16 42 H 0.16 2.84 5.90 -2.91 -0.02 2.82 16 Total: -1.00 -76.09 341.67 8.13 -67.96 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 1.02 Total: 26.52 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 4.37 Total: -41.29 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.30 Total: -52.67 kcal Atomic # 8 Polarization: -47.67 SS G_CDS: 0.42 Total: -47.25 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -76.09 8.13 -67.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337346155.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.961 kcal (2) G-P(sol) polarization free energy of solvation -76.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds