Wall clock time and date at job start Tue Mar 31 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47024 * 2 1 4 4 H 1.09003 * 109.47118 * 54.84440 * 3 2 1 5 5 C 1.50707 * 109.47112 * 174.83918 * 3 2 1 6 6 H 1.07991 * 119.99562 * 119.99487 * 5 3 2 7 7 C 1.37873 * 120.00033 * 300.00503 * 5 3 2 8 8 N 1.31514 * 120.00057 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99935 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46811 * 59.99621 * 9 7 5 11 11 H 1.48498 * 109.47111 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46823 * 299.99556 * 9 7 5 13 13 N 1.46497 * 109.47052 * 294.84326 * 3 2 1 14 14 C 1.38916 * 119.99641 * 157.85377 * 13 3 2 15 15 C 1.39231 * 119.58199 * 355.56361 * 14 13 3 16 16 C 1.38070 * 119.22017 * 180.02562 * 15 14 13 17 17 C 1.39944 * 118.40007 * 0.02562 * 16 15 14 18 18 C 1.48431 * 120.44917 * 180.02562 * 17 16 15 19 19 N 1.34062 * 126.67527 * 179.68731 * 18 17 16 20 20 N 1.28985 * 107.26444 * 179.86879 * 19 18 17 21 21 N 1.28729 * 108.94712 * 0.40349 * 20 19 18 22 22 H 0.97006 * 125.34204 * 179.74556 * 21 20 19 23 23 N 1.28868 * 109.32224 * 359.74094 * 21 20 19 24 24 C 1.39128 * 119.10104 * 0.02562 * 17 16 15 25 25 C 1.50704 * 119.65490 * 179.97438 * 24 17 16 26 26 N 1.31818 * 120.68946 * 359.97438 * 24 17 16 27 27 H 1.09006 * 109.46906 * 175.48414 * 1 2 3 28 28 H 1.08993 * 109.47200 * 295.48961 * 1 2 3 29 29 H 1.08999 * 109.46858 * 55.48966 * 1 2 3 30 30 H 1.08996 * 109.47194 * 239.99212 * 2 1 3 31 31 H 1.09007 * 109.46792 * 119.99747 * 2 1 3 32 32 H 0.97004 * 119.99893 * 180.02562 * 8 7 5 33 33 H 0.96998 * 120.00189 * 337.84383 * 13 3 2 34 34 H 1.08001 * 120.39365 * 0.02562 * 15 14 13 35 35 H 1.07993 * 120.79927 * 179.97438 * 16 15 14 36 36 H 1.09003 * 109.47024 * 270.00389 * 25 24 17 37 37 H 1.09001 * 109.46846 * 30.00063 * 25 24 17 38 38 H 1.08993 * 109.47160 * 150.00019 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6032 1.9823 0.8402 5 6 3.5417 1.4444 0.1278 6 1 4.1489 1.8882 -0.6471 7 6 4.1401 0.8795 1.2340 8 7 3.4005 0.3394 2.1778 9 14 6.0015 0.8813 1.3920 10 1 6.4968 2.2812 1.3917 11 1 6.3910 0.2191 2.6629 12 1 6.5961 0.1454 0.2474 13 7 1.6557 2.0963 -1.2534 14 6 1.5828 3.4819 -1.3200 15 6 1.7858 4.2371 -0.1680 16 6 1.7111 5.6137 -0.2426 17 6 1.4315 6.1989 -1.4827 18 6 1.3413 7.6746 -1.6149 19 7 1.0877 8.3640 -2.7363 20 7 1.0927 9.6158 -2.4254 21 7 1.3454 9.7334 -1.1687 22 1 1.4089 10.5720 -0.6851 23 7 1.5007 8.5624 -0.6536 24 6 1.2393 5.3787 -2.5900 25 6 0.9371 5.9957 -3.9313 26 7 1.3189 4.0677 -2.4781 27 1 -0.3633 -1.0245 -0.0809 28 1 -0.3633 0.4422 0.9276 29 1 -0.3633 0.5822 -0.8468 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8216 -0.0578 2.9563 33 1 1.4523 1.5617 -2.0368 34 1 1.9993 3.7517 0.7729 35 1 1.8639 6.2242 0.6351 36 1 -0.1416 6.1011 -4.0480 37 1 1.4069 6.9772 -3.9939 38 1 1.3272 5.3550 -4.7221 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604013169.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:02 Heat of formation + Delta-G solvation = 158.717241 kcal Electronic energy + Delta-G solvation = -22252.617218 eV Core-core repulsion = 18940.126302 eV Total energy + Delta-G solvation = -3312.490916 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.27428 -39.77387 -36.56100 -34.43151 -33.67750 -32.79486 -32.08217 -31.42312 -29.79221 -27.03917 -26.84033 -24.55354 -23.76368 -22.96202 -21.98866 -21.20730 -19.81284 -18.93688 -16.99621 -16.90623 -16.58097 -16.18312 -15.54078 -14.77044 -14.32065 -14.06729 -13.80530 -13.38130 -13.12516 -12.85027 -12.64779 -12.31346 -12.20645 -11.89968 -11.73255 -11.49308 -11.37467 -11.30059 -11.15263 -10.98246 -10.83100 -10.60711 -10.25976 -10.07412 -9.87677 -9.76780 -9.18501 -8.96079 -8.76745 -8.52459 -6.89754 -6.15904 -4.27993 1.06883 1.46028 1.89142 2.36073 2.74006 3.23723 3.28424 3.32259 3.85914 4.09329 4.32579 4.41289 4.46496 5.03357 5.10482 5.26246 5.52958 5.60033 5.71725 5.88528 6.02138 6.03756 6.09539 6.11192 6.22748 6.30705 6.44664 6.57612 6.61094 6.70753 6.76685 6.88033 6.91367 7.10682 7.34408 7.54972 7.69818 7.95745 8.10891 8.31307 8.41536 8.71716 8.88302 9.40379 10.84345 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.019346 B = 0.004204 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.010909 B = 6658.772513 C = 7427.804645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.272 3.728 4 H 0.045 0.955 5 C -0.530 4.530 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.889 5.889 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.689 5.689 14 C 0.443 3.557 15 C -0.232 4.232 16 C 0.002 3.998 17 C -0.177 4.177 18 C 0.259 3.741 19 N -0.279 5.279 20 N -0.062 5.062 21 N -0.234 5.234 22 H 0.471 0.529 23 N -0.312 5.312 24 C 0.227 3.773 25 C -0.115 4.115 26 N -0.563 5.563 27 H 0.037 0.963 28 H 0.046 0.954 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.109 0.891 32 H 0.265 0.735 33 H 0.392 0.608 34 H 0.149 0.851 35 H 0.133 0.867 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 12.121 -4.314 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.063 0.937 5 C -0.569 4.569 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.527 5.527 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.313 5.313 14 C 0.202 3.798 15 C -0.257 4.257 16 C -0.025 4.025 17 C -0.188 4.188 18 C -0.020 4.020 19 N -0.153 5.153 20 N -0.057 5.057 21 N -0.080 5.080 22 H 0.324 0.676 23 N -0.164 5.164 24 C 0.083 3.917 25 C -0.173 4.173 26 N -0.283 5.283 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.128 0.872 32 H 0.075 0.925 33 H 0.226 0.774 34 H 0.166 0.834 35 H 0.151 0.849 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.233 11.883 -4.932 13.889 hybrid contribution 1.270 0.341 1.257 1.819 sum -3.963 12.224 -3.675 13.365 Atomic orbital electron populations 1.21839 0.98654 0.99562 1.00545 1.21872 0.92260 0.99030 1.03557 1.18956 0.94460 0.89431 0.80139 0.93692 1.21486 0.91193 1.38406 1.05793 0.92166 1.24880 0.98470 0.94758 0.95397 1.69827 1.35234 1.38129 1.09479 0.86569 0.85177 0.78454 0.77375 1.20143 1.21154 1.20198 1.45482 1.68802 1.01169 1.15805 1.18619 0.86271 0.86462 0.88444 1.21534 1.10738 0.93204 1.00222 1.21178 0.91270 0.94299 0.95767 1.17568 1.20094 0.84825 0.96282 1.23518 0.98155 0.95756 0.84585 1.76071 1.19747 0.95514 1.23943 1.78833 1.14394 1.15074 0.97428 1.47632 1.44943 1.08914 1.06475 0.67610 1.74967 1.24105 0.90904 1.26377 1.20843 0.88835 0.87564 0.94432 1.21106 1.02612 1.01729 0.91867 1.67145 1.24348 1.11032 1.25801 0.94414 0.93528 0.94193 0.94120 0.87247 0.92478 0.77386 0.83380 0.84947 0.90625 0.87986 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.85 37.16 0.37 -2.31 16 2 C -0.13 -2.72 5.30 -26.73 -0.14 -2.86 16 3 C 0.27 6.09 1.67 -69.08 -0.12 5.97 16 4 H 0.05 1.09 6.42 -51.93 -0.33 0.75 16 5 C -0.53 -13.34 8.63 -34.44 -0.30 -13.63 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -23.04 11.29 55.43 0.63 -22.41 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.69 -13.89 4.65 -55.05 -0.26 -14.15 16 14 C 0.44 8.84 7.58 -155.04 -1.18 7.67 16 15 C -0.23 -4.47 9.15 -39.27 -0.36 -4.83 16 16 C 0.00 0.03 9.82 -39.00 -0.38 -0.35 16 17 C -0.18 -2.99 5.89 -104.73 -0.62 -3.61 16 18 C 0.26 3.95 7.79 -156.30 -1.22 2.73 16 19 N -0.28 -4.05 9.09 32.15 0.29 -3.76 16 20 N -0.06 -0.77 13.47 60.35 0.81 0.05 16 21 N -0.23 -2.35 7.90 60.35 0.48 -1.87 16 22 H 0.47 2.30 8.96 -340.36 -3.05 -0.75 16 23 N -0.31 -4.16 12.15 32.17 0.39 -3.77 16 24 C 0.23 3.92 6.81 -82.27 -0.56 3.35 16 25 C -0.12 -1.64 9.36 36.01 0.34 -1.30 16 26 N -0.56 -10.72 10.29 -8.42 -0.09 -10.81 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.68 7.62 -51.93 -0.40 0.28 16 30 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.11 2.60 5.95 -51.93 -0.31 2.29 16 32 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.39 7.42 8.67 -40.82 -0.35 7.06 16 34 H 0.15 3.03 6.15 -52.49 -0.32 2.71 16 35 H 0.13 2.00 7.96 -52.49 -0.42 1.58 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.10 1.44 5.12 -51.93 -0.27 1.17 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 320.54 15.07 4.83 4.83 Total: -1.00 -27.95 320.54 -9.30 -37.25 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.11 Total: 6.93 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -4.26 Total: -7.54 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 2.26 Total: -56.72 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.95 -9.30 -37.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604013169.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.963 kcal (2) G-P(sol) polarization free energy of solvation -27.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds