Wall clock time and date at job start Tue Mar 31 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46706 * 2 1 4 4 H 1.09001 * 109.46962 * 55.00495 * 3 2 1 5 5 C 1.50707 * 109.47093 * 175.00103 * 3 2 1 6 6 H 1.07996 * 119.99720 * 120.27073 * 5 3 2 7 7 C 1.37876 * 119.99851 * 300.00518 * 5 3 2 8 8 N 1.31514 * 120.00313 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99843 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47110 * 59.99781 * 9 7 5 11 11 H 1.48506 * 109.47257 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47258 * 299.99616 * 9 7 5 13 13 N 1.46497 * 109.47289 * 295.00144 * 3 2 1 14 14 C 1.34778 * 120.00163 * 85.00235 * 13 3 2 15 15 O 1.21584 * 119.99615 * 0.02562 * 14 13 3 16 16 N 1.34770 * 119.99998 * 179.97438 * 14 13 3 17 17 C 1.39945 * 119.99895 * 175.36925 * 16 14 13 18 18 C 1.38889 * 120.10489 * 35.08265 * 17 16 14 19 19 C 1.37970 * 119.85982 * 179.97438 * 18 17 16 20 20 C 1.38560 * 120.31748 * 0.02562 * 19 18 17 21 21 C 1.38286 * 119.95526 * 359.97438 * 20 19 18 22 22 C 1.38390 * 119.91910 * 359.74525 * 21 20 19 23 23 C 1.51382 * 109.75434 * 179.97438 * 21 20 19 24 24 C 1.54342 * 105.16914 * 342.80128 * 23 21 20 25 25 C 1.51385 * 130.31097 * 179.97438 * 20 19 18 26 26 H 1.09001 * 109.47360 * 59.99727 * 1 2 3 27 27 H 1.09000 * 109.46747 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46779 * 299.99463 * 1 2 3 29 29 H 1.09000 * 109.47493 * 240.00341 * 2 1 3 30 30 H 1.09000 * 109.47344 * 119.99716 * 2 1 3 31 31 H 0.97001 * 120.00441 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99642 * 265.00285 * 13 3 2 33 33 H 0.96994 * 120.00494 * 355.37312 * 16 14 13 34 34 H 1.07999 * 120.06576 * 359.97438 * 18 17 16 35 35 H 1.08003 * 119.83910 * 179.97438 * 19 18 17 36 36 H 1.07994 * 119.91540 * 180.25581 * 22 21 20 37 37 H 1.08997 * 110.30423 * 223.87777 * 23 21 20 38 38 H 1.08998 * 110.38745 * 101.76339 * 23 21 20 39 39 H 1.09004 * 110.81657 * 268.14749 * 24 23 21 40 40 H 1.08995 * 110.99189 * 144.67924 * 24 23 21 41 41 H 1.09004 * 110.30346 * 316.13310 * 25 20 19 42 42 H 1.09008 * 110.30311 * 78.28095 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4445 0.1238 6 1 4.1469 1.8930 -0.6502 7 6 4.1433 0.8785 1.2279 8 7 3.4063 0.3374 2.1732 9 14 6.0050 0.8802 1.3810 10 1 6.5004 2.2802 1.3807 11 1 6.3979 0.2169 2.6502 12 1 6.5967 0.1455 0.2342 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6645 -1.3669 15 8 -0.3413 2.6326 -0.4316 16 7 0.0786 3.2675 -2.5183 17 6 -1.2182 3.7705 -2.6724 18 6 -1.8839 4.3251 -1.5870 19 6 -3.1620 4.8201 -1.7448 20 6 -3.7852 4.7662 -2.9811 21 6 -3.1250 4.2146 -4.0638 22 6 -1.8406 3.7222 -3.9113 23 6 -4.0126 4.2735 -5.2887 24 6 -5.4363 4.5165 -4.7444 25 6 -5.1612 5.2336 -3.4055 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0604 2.9502 32 1 2.2718 2.1232 -1.9977 33 1 0.7208 3.3527 -3.2401 34 1 -1.4020 4.3688 -0.6214 35 1 -3.6795 5.2509 -0.9004 36 1 -1.3235 3.2953 -4.7578 37 1 -3.9712 3.3292 -5.8314 38 1 -3.7103 5.0955 -5.9375 39 1 -5.9543 3.5718 -4.5790 40 1 -6.0072 5.1570 -5.4166 41 1 -5.9046 4.9448 -2.6626 42 1 -5.1666 6.3145 -3.5467 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155558607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:07 Heat of formation + Delta-G solvation = -14.197238 kcal Electronic energy + Delta-G solvation = -22528.362274 eV Core-core repulsion = 19279.620816 eV Total energy + Delta-G solvation = -3248.741458 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.42712 -39.23643 -36.38956 -34.85709 -33.57893 -32.30750 -31.19080 -30.63171 -28.22672 -27.28460 -26.52843 -23.16885 -22.58960 -21.72470 -20.84271 -19.96496 -19.50448 -18.16053 -16.98630 -16.06276 -15.71846 -15.55858 -15.30814 -14.97014 -14.43250 -14.22758 -13.53342 -13.30559 -13.17092 -12.97372 -12.68117 -12.62265 -12.19230 -11.99668 -11.56024 -11.48450 -11.29522 -11.25005 -11.11733 -10.98882 -10.82567 -10.72433 -10.32353 -10.18096 -9.81673 -9.54982 -9.29243 -9.04647 -8.58510 -8.50858 -7.94989 -7.58673 -6.13166 -4.22727 1.49032 1.56030 3.19801 3.24854 3.30448 3.32901 3.69812 4.06900 4.31278 4.43146 4.51724 4.85075 4.94611 5.11581 5.15572 5.18634 5.24443 5.52922 5.56889 5.61746 5.65632 5.69219 5.89265 5.96252 6.05381 6.18124 6.42097 6.49366 6.50813 6.57105 6.68229 6.76251 6.81813 7.03997 7.13720 7.32684 7.36993 7.38951 7.46990 7.63831 7.86819 7.99181 8.18417 8.73066 8.84954 9.26162 9.46006 10.92138 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.038864 B = 0.003159 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.286866 B = 8861.504040 C = 9004.359639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.719 5.719 14 C 0.693 3.307 15 O -0.575 6.575 16 N -0.697 5.697 17 C 0.182 3.818 18 C -0.119 4.119 19 C -0.089 4.089 20 C -0.127 4.127 21 C -0.084 4.084 22 C -0.144 4.144 23 C -0.079 4.079 24 C -0.121 4.121 25 C -0.077 4.077 26 H 0.038 0.962 27 H 0.021 0.979 28 H 0.049 0.951 29 H 0.030 0.970 30 H 0.099 0.901 31 H 0.265 0.735 32 H 0.385 0.615 33 H 0.401 0.599 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.490 7.809 -13.789 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.370 5.370 14 C 0.393 3.607 15 O -0.453 6.453 16 N -0.345 5.345 17 C 0.086 3.914 18 C -0.139 4.139 19 C -0.108 4.108 20 C -0.128 4.128 21 C -0.085 4.085 22 C -0.165 4.165 23 C -0.116 4.116 24 C -0.158 4.158 25 C -0.114 4.114 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.217 0.783 33 H 0.236 0.764 34 H 0.163 0.837 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.072 7.587 -12.650 19.709 hybrid contribution 1.741 -0.105 -0.584 1.840 sum -11.330 7.482 -13.234 18.960 Atomic orbital electron populations 1.21815 0.98252 0.97899 1.01309 1.21956 0.92699 0.99861 1.02200 1.18714 0.93952 0.88895 0.79935 0.93217 1.21187 0.90673 1.39086 1.06446 0.92161 1.24873 0.98607 0.94803 0.95342 1.69885 1.35229 1.37477 1.09292 0.86507 0.84815 0.78296 0.77456 1.20206 1.21112 1.20179 1.45837 1.13278 1.58562 1.19313 1.16104 0.83648 0.78675 0.82241 1.90882 1.51795 1.64676 1.37936 1.42831 1.11906 1.61517 1.18266 1.17356 0.85023 0.95114 0.93947 1.21328 0.95221 0.97487 0.99885 1.20506 0.94610 0.99641 0.96016 1.20470 0.96734 1.01854 0.93759 1.20213 0.93653 0.98801 0.95792 1.20233 0.94680 1.04872 0.96749 1.20995 0.93321 1.02075 0.95174 1.22282 0.96318 1.00773 0.96433 1.20970 0.93597 0.99979 0.96892 0.94287 0.96016 0.93140 0.95119 0.88269 0.92464 0.78264 0.76445 0.83668 0.86292 0.86334 0.90975 0.90484 0.91076 0.90832 0.91080 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.29 7.15 2.24 -69.08 -0.15 7.00 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.55 11.29 55.43 0.63 -23.92 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.72 -14.72 5.03 -59.81 -0.30 -15.02 16 14 C 0.69 13.85 6.98 -86.92 -0.61 13.24 16 15 O -0.58 -13.39 10.91 5.29 0.06 -13.34 16 16 N -0.70 -10.92 5.34 -14.25 -0.08 -11.00 16 17 C 0.18 2.84 6.30 -83.73 -0.53 2.32 16 18 C -0.12 -1.96 8.70 -39.44 -0.34 -2.30 16 19 C -0.09 -1.25 10.03 -39.56 -0.40 -1.65 16 20 C -0.13 -1.60 6.14 -104.15 -0.64 -2.24 16 21 C -0.08 -1.04 6.13 -104.21 -0.64 -1.67 16 22 C -0.14 -1.92 9.96 -39.34 -0.39 -2.31 16 23 C -0.08 -0.71 6.77 -26.85 -0.18 -0.90 16 24 C -0.12 -0.97 7.08 -25.32 -0.18 -1.14 16 25 C -0.08 -0.72 6.77 -26.84 -0.18 -0.90 16 26 H 0.04 0.88 5.65 -51.93 -0.29 0.59 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.39 6.77 8.56 -40.82 -0.35 6.42 16 33 H 0.40 4.89 8.84 -40.82 -0.36 4.53 16 34 H 0.15 2.72 6.22 -52.49 -0.33 2.39 16 35 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -30.19 336.45 -10.32 -40.51 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.21 Total: 11.46 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -4.47 Total: -9.19 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.25 Total: -49.94 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.06 Total: -13.34 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.19 -10.32 -40.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155558607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.309 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds