Wall clock time and date at job start Tue Mar 31 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32614 * 119.99985 * 2 1 4 4 C 1.47762 * 120.00023 * 180.02562 * 3 2 1 5 5 C 1.39597 * 120.07180 * 180.02562 * 4 3 2 6 6 C 1.37810 * 119.92644 * 179.97438 * 5 4 3 7 7 C 1.38998 * 120.07633 * 0.02562 * 6 5 4 8 8 N 1.39819 * 119.93088 * 179.97438 * 7 6 5 9 9 C 1.34774 * 119.99917 * 146.68440 * 8 7 6 10 10 O 1.21583 * 120.00228 * 354.67648 * 9 8 7 11 11 N 1.34778 * 119.99875 * 174.68773 * 9 8 7 12 12 C 1.46503 * 120.00116 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.47005 * 34.99719 * 12 11 9 14 14 C 1.50700 * 109.47244 * 154.99653 * 12 11 9 15 15 H 1.07994 * 119.99859 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99880 * 180.02562 * 14 12 11 17 17 N 1.31512 * 119.99885 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 119.99854 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46863 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47189 * 119.99965 * 18 16 14 21 21 H 1.48496 * 109.46701 * 239.99875 * 18 16 14 22 22 C 1.53000 * 109.47179 * 274.99679 * 12 11 9 23 23 C 1.53005 * 109.47131 * 64.99549 * 22 12 11 24 24 C 1.38999 * 120.13763 * 0.23137 * 7 6 5 25 25 C 1.37817 * 120.07417 * 359.48853 * 24 7 6 26 26 H 1.09000 * 109.46748 * 300.00146 * 1 2 3 27 27 H 1.08999 * 109.47115 * 59.99806 * 1 2 3 28 28 H 1.08991 * 109.46830 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.00128 * 180.02562 * 2 1 3 30 30 H 1.08000 * 119.99887 * 0.02562 * 3 2 1 31 31 H 1.08005 * 120.03240 * 359.95950 * 5 4 3 32 32 H 1.08007 * 119.96266 * 179.97438 * 6 5 4 33 33 H 0.97001 * 119.99991 * 326.67819 * 8 7 6 34 34 H 0.97000 * 120.00008 * 359.97438 * 11 9 8 35 35 H 0.97002 * 119.99888 * 180.02562 * 17 16 14 36 36 H 1.08998 * 109.47030 * 184.99834 * 22 12 11 37 37 H 1.09001 * 109.46921 * 305.00116 * 22 12 11 38 38 H 1.08998 * 109.47246 * 180.02562 * 23 22 12 39 39 H 1.09002 * 109.46785 * 300.00443 * 23 22 12 40 40 H 1.09000 * 109.46772 * 59.99914 * 23 22 12 41 41 H 1.07997 * 119.95984 * 179.72517 * 24 7 6 42 42 H 1.08006 * 120.03718 * 180.28061 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1701 1.1485 0.0000 4 6 3.6477 1.1485 -0.0006 5 6 4.3472 2.3566 0.0000 6 6 5.7253 2.3531 0.0000 7 6 6.4188 1.1485 -0.0011 8 7 7.8170 1.1485 -0.0017 9 6 8.4911 0.1727 0.6385 10 8 7.8874 -0.6521 1.2969 11 7 9.8345 0.1113 0.5490 12 6 10.5674 -0.9490 1.2453 13 1 9.9759 -1.8646 1.2381 14 6 11.8805 -1.1938 0.5475 15 1 12.1427 -0.6175 -0.3273 16 6 12.7466 -2.1542 1.0255 17 7 12.4270 -2.8563 2.0906 18 14 14.3746 -2.4571 0.1609 19 1 14.4946 -1.5427 -1.0030 20 1 15.4916 -2.2049 1.1063 21 1 14.4314 -3.8649 -0.3082 22 6 10.8299 -0.5228 2.6911 23 6 9.4988 -0.3951 3.4348 24 6 5.7253 -0.0561 -0.0070 25 6 4.3471 -0.0596 -0.0012 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 2.0470 -0.9353 -0.0004 30 1 1.6300 2.0838 0.0004 31 1 3.8088 3.2929 0.0001 32 1 6.2671 3.2874 0.0000 33 1 8.3018 1.8508 -0.4628 34 1 10.3162 0.7692 0.0236 35 1 13.0366 -3.5318 2.4270 36 1 11.4508 -1.2712 3.1835 37 1 11.3441 0.4382 2.6989 38 1 9.6858 -0.0910 4.4647 39 1 8.8779 0.3533 2.9423 40 1 8.9846 -1.3561 3.4269 41 1 6.2671 -0.9903 -0.0124 42 1 3.8089 -0.9960 -0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353268564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:24 Heat of formation + Delta-G solvation = 2.592611 kcal Electronic energy + Delta-G solvation = -22103.459219 eV Core-core repulsion = 18855.445823 eV Total energy + Delta-G solvation = -3248.013396 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.23088 -38.63121 -35.93614 -34.87600 -33.76093 -32.39761 -30.97249 -30.83705 -29.67723 -27.08687 -25.97325 -23.19898 -22.98859 -22.19568 -20.50287 -19.59451 -19.32591 -18.14168 -17.52551 -16.18331 -15.96519 -15.27770 -15.04169 -14.54891 -14.31397 -14.03772 -13.57540 -13.46033 -13.40467 -13.08419 -12.94910 -12.71259 -12.63049 -12.17418 -11.71946 -11.57163 -11.30440 -11.26437 -10.98486 -10.91250 -10.87238 -10.45504 -10.31149 -10.19402 -9.65364 -9.42124 -9.17658 -9.05136 -8.78900 -8.52977 -7.91281 -7.44340 -6.14716 -4.24030 0.99065 1.55736 2.48194 3.19531 3.22298 3.30716 3.33777 3.75402 4.14954 4.30483 4.65894 4.81244 4.95376 5.05415 5.10177 5.17226 5.20975 5.41382 5.45804 5.52169 5.60760 5.74558 5.83776 6.11274 6.33336 6.39009 6.40601 6.47592 6.49918 6.58614 6.66299 6.75702 6.88384 7.01792 7.11306 7.26688 7.34612 7.37083 7.44629 7.62926 7.84982 7.96842 8.16849 8.71585 8.82881 9.23549 9.44564 10.90715 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.031218 B = 0.002968 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.705894 B = 9430.838222 C = 9543.442953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.164 4.164 3 C -0.112 4.112 4 C -0.090 4.090 5 C -0.089 4.089 6 C -0.158 4.158 7 C 0.187 3.813 8 N -0.698 5.698 9 C 0.691 3.309 10 O -0.574 6.574 11 N -0.718 5.718 12 C 0.286 3.714 13 H 0.050 0.950 14 C -0.534 4.534 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.881 5.881 18 Si 0.902 3.098 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.129 4.129 23 C -0.135 4.135 24 C -0.120 4.120 25 C -0.092 4.092 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.402 0.598 34 H 0.386 0.614 35 H 0.264 0.736 36 H 0.099 0.901 37 H 0.030 0.970 38 H 0.021 0.979 39 H 0.038 0.962 40 H 0.050 0.950 41 H 0.140 0.860 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.157 9.796 -5.107 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.182 4.182 3 C -0.130 4.130 4 C -0.091 4.091 5 C -0.107 4.107 6 C -0.179 4.179 7 C 0.090 3.910 8 N -0.345 5.345 9 C 0.392 3.608 10 O -0.451 6.451 11 N -0.369 5.369 12 C 0.184 3.816 13 H 0.068 0.932 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.137 4.137 17 N -0.519 5.519 18 Si 0.729 3.271 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.168 4.168 23 C -0.193 4.193 24 C -0.141 4.141 25 C -0.111 4.111 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.236 0.764 34 H 0.218 0.782 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.049 0.951 38 H 0.040 0.960 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.158 0.842 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.478 8.802 -4.351 19.182 hybrid contribution 1.484 0.546 -0.795 1.770 sum -14.994 9.348 -5.146 18.403 Atomic orbital electron populations 1.20816 0.93012 1.02328 1.01795 1.23336 0.95991 0.98277 1.00594 1.21577 0.92002 0.98111 1.01352 1.18928 0.92842 0.93223 1.04155 1.20909 0.93182 0.97110 0.99548 1.20758 0.94377 0.96406 1.06383 1.17629 0.82182 0.93767 0.97388 1.42918 1.04404 1.30105 1.57074 1.16122 0.83021 0.81612 0.80044 1.90909 1.67863 1.41608 1.44746 1.45854 1.03464 1.34021 1.53604 1.18735 0.90233 0.84617 0.88021 0.93192 1.21252 1.02263 1.20777 1.12922 0.92044 1.24882 0.98443 0.95406 0.94961 1.69907 1.36702 1.22858 1.22400 0.86391 0.83093 0.78150 0.79444 1.19776 1.20863 1.20869 1.21961 0.95940 1.00647 0.98209 1.21816 0.98859 1.01191 0.97414 1.21209 0.93829 0.98253 1.00778 1.21144 0.93573 0.97330 0.99003 0.91721 0.91761 0.92058 0.86916 0.86863 0.85984 0.85924 0.76374 0.78234 0.92573 0.88247 0.95104 0.95979 0.94321 0.93130 0.84233 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.18 36.01 0.37 -0.52 16 2 C -0.16 -1.56 9.68 -36.21 -0.35 -1.91 16 3 C -0.11 -1.16 9.55 -37.59 -0.36 -1.52 16 4 C -0.09 -1.13 5.87 -104.99 -0.62 -1.74 16 5 C -0.09 -1.03 9.77 -39.23 -0.38 -1.42 16 6 C -0.16 -1.98 9.94 -39.46 -0.39 -2.37 16 7 C 0.19 2.84 6.28 -83.65 -0.53 2.32 16 8 N -0.70 -10.69 5.34 -14.19 -0.08 -10.76 16 9 C 0.69 13.65 6.86 -86.92 -0.60 13.06 16 10 O -0.57 -13.29 11.17 5.29 0.06 -13.23 16 11 N -0.72 -14.56 5.03 -59.81 -0.30 -14.86 16 12 C 0.29 7.08 2.24 -69.08 -0.15 6.93 16 13 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 14 C -0.53 -13.85 8.73 -34.44 -0.30 -14.15 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 17 N -0.88 -24.45 11.29 55.43 0.63 -23.83 16 18 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 23 C -0.14 -3.07 8.51 37.16 0.32 -2.76 16 24 C -0.12 -1.94 8.63 -39.45 -0.34 -2.28 16 25 C -0.09 -1.27 9.39 -39.23 -0.37 -1.64 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.11 1.09 6.03 -52.49 -0.32 0.77 16 30 H 0.11 0.96 8.05 -52.49 -0.42 0.54 16 31 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.40 4.74 8.83 -40.82 -0.36 4.38 16 34 H 0.39 6.70 8.56 -40.82 -0.35 6.35 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 40 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 41 H 0.14 2.57 6.42 -52.49 -0.34 2.24 16 42 H 0.12 1.50 6.16 -52.48 -0.32 1.17 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -30.13 344.01 -9.48 -39.61 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.01 Total: 12.11 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -3.94 Total: -9.60 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.25 Total: -49.45 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.06 Total: -13.23 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.13 -9.48 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353268564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.206 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds