Wall clock time and date at job start Tue Mar 31 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47226 * 2 1 4 4 C 1.50698 * 109.47109 * 240.00231 * 2 1 3 5 5 H 1.08000 * 119.99974 * 239.99991 * 4 2 1 6 6 C 1.37878 * 120.00415 * 60.00230 * 4 2 1 7 7 N 1.31516 * 119.99721 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00141 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47183 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46930 * 119.99923 * 8 6 4 11 11 H 1.48502 * 109.47121 * 239.99444 * 8 6 4 12 12 C 1.52997 * 109.47362 * 120.00177 * 2 1 3 13 13 N 1.46501 * 109.46741 * 299.99972 * 12 2 1 14 14 C 1.34784 * 119.99863 * 179.97438 * 13 12 2 15 15 O 1.21551 * 119.99677 * 0.02562 * 14 13 12 16 16 C 1.47843 * 120.00009 * 179.97438 * 14 13 12 17 17 C 1.40025 * 120.55950 * 354.16472 * 16 14 13 18 18 C 1.38350 * 118.29050 * 179.97438 * 17 16 14 19 19 C 1.38352 * 119.30133 * 0.02562 * 18 17 16 20 20 N 1.31935 * 121.08012 * 359.73531 * 19 18 17 21 21 C 1.31690 * 121.87425 * 0.53439 * 20 19 18 22 22 C 1.50706 * 119.71135 * 179.75198 * 21 20 19 23 23 C 1.53003 * 117.49774 * 283.17098 * 22 21 20 24 24 C 1.52997 * 60.03179 * 107.48078 * 23 22 21 25 25 H 1.08995 * 109.47284 * 300.00239 * 1 2 3 26 26 H 1.09001 * 109.46923 * 59.99424 * 1 2 3 27 27 H 1.08996 * 109.47235 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47150 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47028 * 299.99720 * 3 2 1 30 30 H 1.09000 * 109.46966 * 60.00108 * 3 2 1 31 31 H 0.96998 * 120.00007 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.47249 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.47090 * 59.99354 * 12 2 1 34 34 H 0.96996 * 120.00332 * 359.97438 * 13 12 2 35 35 H 1.08001 * 120.85372 * 359.95526 * 17 16 14 36 36 H 1.07995 * 120.35084 * 180.02562 * 18 17 16 37 37 H 1.07995 * 119.46283 * 180.02562 * 19 18 17 38 38 H 1.08999 * 115.56045 * 137.49101 * 22 21 20 39 39 H 1.08998 * 117.50108 * 214.98595 * 23 22 21 40 40 H 1.09009 * 117.49599 * 359.97438 * 23 22 21 41 41 H 1.08996 * 117.49680 * 107.50099 * 24 23 22 42 42 H 1.09001 * 117.49851 * 252.52360 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0080 9 1 3.1464 -2.2869 -3.6038 10 1 1.1660 -1.5865 -4.8161 11 1 3.1466 -0.1873 -4.8165 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0306 2.4453 14 6 1.8769 -0.4914 3.6695 15 8 2.5757 -1.4797 3.7810 16 6 1.3845 0.2059 4.8767 17 6 0.6828 1.4125 4.7654 18 6 0.2431 2.0246 5.9256 19 6 0.5086 1.4311 7.1468 20 7 1.1684 0.2910 7.2209 21 6 1.6116 -0.3271 6.1458 22 6 2.3647 -1.6248 6.2874 23 6 3.8227 -1.5491 6.7451 24 6 2.7475 -2.0691 7.7013 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7082 1.1610 -3.4844 32 1 3.1299 -0.7209 1.2494 33 1 1.6766 -1.7489 1.2492 34 1 0.9943 0.7582 2.3564 35 1 0.4900 1.8540 3.7988 36 1 -0.3017 2.9559 5.8785 37 1 0.1662 1.9065 8.0541 38 1 2.1024 -2.4015 5.5691 39 1 4.5196 -2.2760 6.3280 40 1 4.2373 -0.5606 6.9434 41 1 2.7370 -3.1382 7.9133 42 1 2.4545 -1.4226 8.5286 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457997607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:16 Heat of formation + Delta-G solvation = 19.911469 kcal Electronic energy + Delta-G solvation = -22796.985473 eV Core-core repulsion = 19549.723079 eV Total energy + Delta-G solvation = -3247.262394 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.78913 -38.80552 -36.89865 -36.29926 -33.54827 -32.51751 -31.28643 -30.68242 -26.03302 -25.78325 -25.27214 -24.49652 -23.84195 -22.19633 -20.86127 -20.42568 -18.87568 -17.68231 -16.98068 -16.24889 -15.91055 -15.39652 -14.93096 -14.86675 -14.68498 -14.32429 -13.95612 -13.72916 -13.12080 -12.93448 -12.76876 -12.60687 -12.22102 -11.78693 -11.44331 -11.42305 -11.24579 -10.91964 -10.73065 -10.68014 -10.44993 -10.39560 -10.22934 -9.95291 -9.86486 -9.68843 -9.46455 -9.15326 -8.98131 -8.82495 -8.48941 -8.34887 -6.05979 -4.15974 0.62566 1.05570 3.06863 3.24979 3.33780 3.37951 3.58126 3.70907 4.03117 4.13840 4.37258 4.56935 4.62928 4.76393 4.99913 5.09043 5.17109 5.21150 5.21524 5.38431 5.56463 5.75388 5.88562 5.92642 5.97464 6.16995 6.24474 6.27544 6.33686 6.44269 6.50065 6.71989 6.75696 6.87701 6.95087 6.96515 7.29987 7.50288 7.65570 7.78638 7.95873 7.96696 8.09998 8.33768 8.59098 8.84894 9.50174 10.95558 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.026370 B = 0.003760 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.549957 B = 7445.673809 C = 8252.169875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.132 3.868 13 N -0.710 5.710 14 C 0.550 3.450 15 O -0.534 6.534 16 C -0.174 4.174 17 C -0.042 4.042 18 C -0.186 4.186 19 C 0.119 3.881 20 N -0.488 5.488 21 C 0.213 3.787 22 C -0.102 4.102 23 C -0.151 4.151 24 C -0.171 4.171 25 H 0.004 0.996 26 H 0.086 0.914 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.004 0.996 31 H 0.259 0.741 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.396 0.604 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.159 0.841 38 H 0.138 0.862 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.499 2.712 16.697 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.010 3.990 13 N -0.361 5.361 14 C 0.335 3.665 15 O -0.412 6.412 16 C -0.179 4.179 17 C -0.069 4.069 18 C -0.206 4.206 19 C -0.038 4.038 20 N -0.196 5.196 21 C 0.075 3.925 22 C -0.121 4.121 23 C -0.188 4.188 24 C -0.208 4.208 25 H 0.023 0.977 26 H 0.105 0.895 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.105 0.895 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.232 0.768 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.176 0.824 38 H 0.156 0.844 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.926 1.745 17.396 17.508 hybrid contribution -0.271 0.577 -1.857 1.963 sum -1.196 2.322 15.539 15.757 Atomic orbital electron populations 1.21832 0.97741 0.99254 1.00023 1.18377 0.92816 0.92789 0.90621 1.21833 0.98668 0.98326 1.00000 1.21010 1.31451 1.12108 0.89805 0.92325 1.24880 0.94831 0.94913 0.98885 1.69808 1.36681 1.22804 1.23161 0.86511 0.78651 0.79768 0.82944 1.19731 1.21047 1.21053 1.21766 0.98289 0.95847 0.83076 1.46260 1.52324 1.31614 1.05871 1.17987 0.81034 0.84362 0.83073 1.90722 1.38080 1.26020 1.86427 1.20938 1.03778 0.97648 0.95531 1.21854 0.92373 0.92907 0.99731 1.22079 1.03060 1.02258 0.93227 1.22923 0.92604 0.90623 0.97690 1.67490 1.10910 1.09078 1.32135 1.20540 0.91372 0.93775 0.86836 1.21045 0.97135 0.94987 0.98917 1.22810 0.90827 1.02551 1.02649 1.23005 1.03084 1.01263 0.93469 0.97664 0.89525 0.95355 0.95352 0.89525 0.97695 0.93041 0.92443 0.92453 0.76829 0.84203 0.84177 0.82383 0.84440 0.88259 0.89424 0.88840 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 2 C 0.05 1.24 0.50 -155.66 -0.08 1.16 16 3 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 4 C -0.51 -12.99 8.01 -34.44 -0.28 -13.27 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.20 9.35 55.43 0.52 -22.69 16 8 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.13 2.74 4.50 -4.04 -0.02 2.72 16 13 N -0.71 -12.45 4.91 -61.25 -0.30 -12.75 16 14 C 0.55 9.62 7.74 -12.33 -0.10 9.52 16 15 O -0.53 -10.58 13.56 5.32 0.07 -10.50 16 16 C -0.17 -2.57 5.89 -104.82 -0.62 -3.18 16 17 C -0.04 -0.50 9.63 -38.87 -0.37 -0.88 16 18 C -0.19 -1.80 10.10 -39.50 -0.40 -2.20 16 19 C 0.12 1.22 11.17 -17.47 -0.20 1.02 16 20 N -0.49 -6.39 9.32 -9.14 -0.09 -6.47 16 21 C 0.21 3.11 6.49 -82.18 -0.53 2.58 16 22 C -0.10 -1.47 4.36 -91.73 -0.40 -1.87 16 23 C -0.15 -1.93 10.23 -26.73 -0.27 -2.20 16 24 C -0.17 -2.02 10.03 -26.69 -0.27 -2.29 16 25 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 26 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 30 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 31 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.40 6.23 4.31 -40.82 -0.18 6.06 16 35 H 0.14 1.44 6.56 -52.49 -0.34 1.10 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.14 2.19 6.54 -51.93 -0.34 1.85 16 39 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.09 1.12 8.14 -51.92 -0.42 0.70 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.10 1.21 7.57 -51.93 -0.39 0.82 16 LS Contribution 337.96 15.07 5.09 5.09 Total: -1.00 -28.28 337.96 -8.69 -36.96 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.94 Total: 7.33 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -3.02 Total: -12.40 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.13 Total: -41.91 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.28 -8.69 -36.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457997607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.872 kcal (2) G-P(sol) polarization free energy of solvation -28.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds