Wall clock time and date at job start Tue Mar 31 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 111.00270 * 2 1 4 4 C 1.46900 * 110.99476 * 123.95540 * 2 1 3 5 5 C 1.52995 * 109.47386 * 75.82315 * 4 2 1 6 6 C 1.50704 * 115.55079 * 34.27852 * 5 4 2 7 7 O 1.21287 * 119.99675 * 245.51373 * 6 5 4 8 8 N 1.34776 * 120.00316 * 65.50530 * 6 5 4 9 9 C 1.39933 * 120.00198 * 171.34294 * 8 6 5 10 10 C 1.39294 * 119.94404 * 32.72873 * 9 8 6 11 11 C 1.38492 * 120.42913 * 179.97438 * 10 9 8 12 12 C 1.37676 * 120.32078 * 0.02562 * 11 10 9 13 13 C 1.40740 * 119.88592 * 359.97438 * 12 11 10 14 14 C 1.41413 * 120.21022 * 180.02562 * 13 12 11 15 15 H 1.07993 * 120.00240 * 25.40184 * 14 13 12 16 16 C 1.39938 * 119.99775 * 205.40030 * 14 13 12 17 17 N 1.30823 * 119.99917 * 11.60077 * 16 14 13 18 18 Si 1.86795 * 119.99762 * 191.60021 * 16 14 13 19 19 H 1.48505 * 109.47241 * 94.98919 * 18 16 14 20 20 H 1.48498 * 109.47111 * 214.99067 * 18 16 14 21 21 H 1.48502 * 109.47156 * 334.99125 * 18 16 14 22 22 C 1.38233 * 119.94976 * 212.45164 * 9 8 6 23 23 C 1.53002 * 117.50117 * 248.57030 * 5 4 2 24 24 C 1.53001 * 117.50033 * 179.97438 * 5 4 2 25 25 H 1.08997 * 109.47136 * 296.05414 * 1 2 3 26 26 H 1.09007 * 109.47032 * 56.04327 * 1 2 3 27 27 H 1.08995 * 109.47765 * 176.04373 * 1 2 3 28 28 H 1.09006 * 109.46721 * 183.95552 * 3 2 1 29 29 H 1.08998 * 109.47004 * 303.94804 * 3 2 1 30 30 H 1.08999 * 109.46830 * 63.95558 * 3 2 1 31 31 H 1.09000 * 109.47472 * 315.81809 * 4 2 1 32 32 H 1.09007 * 109.46839 * 195.82031 * 4 2 1 33 33 H 0.96999 * 119.99793 * 351.35444 * 8 6 5 34 34 H 1.08001 * 119.78811 * 0.02562 * 10 9 8 35 35 H 1.08000 * 119.83896 * 180.02562 * 11 10 9 36 36 H 1.08000 * 120.06107 * 179.97438 * 12 11 10 37 37 H 0.97007 * 120.00005 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.16136 * 0.02562 * 22 9 8 39 39 H 1.08994 * 117.49505 * 359.97438 * 23 5 4 40 40 H 1.08992 * 117.50281 * 145.02061 * 23 5 4 41 41 H 1.09003 * 117.50259 * 214.97782 * 24 5 4 42 42 H 1.08996 * 117.49975 * 359.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 1.8482 -2.2627 0.8565 6 6 2.0138 -2.6728 -0.5842 7 8 1.0732 -3.1345 -1.1952 8 7 3.2068 -2.5264 -1.1938 9 6 3.4136 -3.0697 -2.4667 10 6 2.3583 -3.1384 -3.3732 11 6 2.5518 -3.6737 -4.6357 12 6 3.7906 -4.1447 -5.0086 13 6 4.8663 -4.0820 -4.1032 14 6 6.1417 -4.5633 -4.4791 15 1 6.4214 -4.5945 -5.5217 16 6 7.0415 -4.9993 -3.5000 17 7 6.6338 -5.1774 -2.2698 18 14 8.8247 -5.3268 -3.9498 19 1 9.6390 -4.1201 -3.6564 20 1 9.3334 -6.4728 -3.1540 21 1 8.9193 -5.6480 -5.3966 22 6 4.6662 -3.5323 -2.8244 23 6 0.8421 -3.0451 1.7029 24 6 2.3427 -3.2350 1.9293 25 1 -0.3633 0.4514 0.9232 26 1 -0.3633 0.5741 -0.8525 27 1 -0.3634 -1.0251 -0.0709 28 1 3.0829 1.3430 -0.0709 29 1 1.5899 1.9162 -0.8525 30 1 1.7044 1.8722 0.9233 31 1 1.4375 -0.5089 2.0381 32 1 3.0486 -0.5252 1.2816 33 1 3.9222 -2.0445 -0.7501 34 1 1.3830 -2.7710 -3.0900 35 1 1.7270 -3.7218 -5.3312 36 1 3.9367 -4.5617 -5.9940 37 1 7.2575 -5.4799 -1.5911 38 1 5.4861 -3.4758 -2.1236 39 1 0.2853 -2.4935 2.4604 40 1 0.2995 -3.8565 1.2179 41 1 2.7879 -4.1716 1.5932 42 1 2.7732 -2.8085 2.8352 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602158181.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:38 Heat of formation + Delta-G solvation = 19.244306 kcal Electronic energy + Delta-G solvation = -23033.179406 eV Core-core repulsion = 19785.888082 eV Total energy + Delta-G solvation = -3247.291324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04904 -37.98084 -36.81126 -35.70645 -34.05840 -33.13340 -29.43128 -28.61307 -27.74940 -27.59157 -25.16870 -23.59147 -22.42836 -22.13602 -21.09470 -20.22734 -18.86009 -17.29329 -16.84117 -15.65032 -15.55322 -15.34654 -15.06204 -14.77379 -14.50513 -14.29206 -13.73358 -13.65894 -12.90225 -12.69888 -12.66748 -12.37585 -12.23524 -11.97267 -11.89042 -11.66764 -11.59353 -11.51332 -11.15847 -11.01979 -10.70026 -10.46370 -10.36448 -10.06956 -9.84202 -9.75325 -9.35970 -8.99318 -8.69228 -8.39519 -7.24830 -6.81609 -6.59410 -4.30699 2.72701 2.92359 3.10557 3.14795 3.29149 3.41829 3.59582 3.88167 3.93550 3.99033 4.70059 4.74886 4.77959 4.98434 5.10330 5.19347 5.22227 5.35706 5.39303 5.57005 5.60510 5.62154 5.76332 5.79861 5.85903 5.96272 6.01445 6.14070 6.39052 6.80850 6.87038 6.92024 6.96545 7.05648 7.16230 7.20538 7.38690 7.74987 7.84298 8.07908 8.15522 8.31759 8.47897 8.70494 8.95224 8.98845 9.08788 10.29534 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.019100 B = 0.004414 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.605548 B = 6341.327193 C = 6743.406397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.542 5.542 3 C 0.027 3.973 4 C 0.098 3.902 5 C -0.153 4.153 6 C 0.569 3.431 7 O -0.529 6.529 8 N -0.652 5.652 9 C 0.146 3.854 10 C -0.225 4.225 11 C -0.093 4.093 12 C -0.228 4.228 13 C 0.116 3.884 14 C -0.463 4.463 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.805 5.805 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.184 4.184 23 C -0.148 4.148 24 C -0.157 4.157 25 H 0.021 0.979 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.398 0.602 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.276 0.724 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 9.037 10.615 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.266 5.266 3 C -0.121 4.121 4 C -0.031 4.031 5 C -0.157 4.157 6 C 0.355 3.645 7 O -0.405 6.405 8 N -0.293 5.293 9 C 0.054 3.946 10 C -0.246 4.246 11 C -0.112 4.112 12 C -0.248 4.248 13 C 0.113 3.887 14 C -0.493 4.493 15 H 0.094 0.906 16 C -0.142 4.142 17 N -0.432 5.432 18 Si 0.734 3.266 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.205 4.205 23 C -0.186 4.186 24 C -0.195 4.195 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.232 0.768 34 H 0.133 0.867 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.146 0.854 39 H 0.115 0.885 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.988 8.391 10.005 14.365 hybrid contribution 0.951 0.409 0.865 1.349 sum -5.037 8.799 10.870 14.865 Atomic orbital electron populations 1.22413 0.86802 1.03160 0.99751 1.61804 1.08550 1.13687 1.42534 1.22382 1.00912 0.88573 1.00258 1.21602 1.00404 0.89579 0.91487 1.21539 1.08282 0.94002 0.91887 1.18948 0.82608 0.76972 0.86004 1.90625 1.39393 1.45167 1.65337 1.43174 1.14224 1.54574 1.17309 1.17696 0.95448 0.98385 0.83116 1.20679 0.98731 1.11433 0.93768 1.20465 0.96025 0.99337 0.95330 1.21047 0.93228 1.10136 1.00374 1.17362 0.92230 0.88375 0.90692 1.19544 0.97895 1.37577 0.94317 0.90575 1.25859 1.00554 0.93260 0.94536 1.69807 1.35951 1.34829 1.02583 0.86289 0.82124 0.78465 0.79717 1.19552 1.20413 1.18696 1.21200 0.94988 1.04414 0.99918 1.23028 0.92288 1.02489 1.00765 1.23065 0.97432 1.00376 0.98616 0.96075 0.91561 0.90475 0.91206 0.91238 0.95947 0.93700 0.90103 0.76814 0.86731 0.89247 0.89088 0.91267 0.85446 0.88462 0.87782 0.87868 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.41 60.06 0.56 0.89 16 2 N -0.54 -6.91 4.14 -251.26 -1.04 -7.95 16 3 C 0.03 0.28 9.51 60.06 0.57 0.85 16 4 C 0.10 1.11 5.13 -3.83 -0.02 1.09 16 5 C -0.15 -2.11 1.67 -155.66 -0.26 -2.37 16 6 C 0.57 10.75 6.16 -10.98 -0.07 10.68 16 7 O -0.53 -11.91 13.88 5.55 0.08 -11.83 16 8 N -0.65 -13.00 5.33 -9.91 -0.05 -13.05 16 9 C 0.15 3.53 6.35 -83.77 -0.53 3.00 16 10 C -0.23 -5.60 8.76 -39.10 -0.34 -5.94 16 11 C -0.09 -2.26 10.02 -39.69 -0.40 -2.66 16 12 C -0.23 -5.85 9.79 -38.84 -0.38 -6.23 16 13 C 0.12 3.17 5.58 -106.84 -0.60 2.57 16 14 C -0.46 -12.45 9.08 -37.74 -0.34 -12.79 16 15 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 16 C 0.07 1.86 5.26 -17.34 -0.09 1.77 16 17 N -0.80 -20.85 10.68 55.55 0.59 -20.26 16 18 Si 0.91 18.86 29.57 -169.99 -5.03 13.83 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 22 C -0.18 -4.79 8.59 -38.68 -0.33 -5.13 16 23 C -0.15 -1.80 9.70 -26.76 -0.26 -2.06 16 24 C -0.16 -1.85 9.95 -26.76 -0.27 -2.12 16 25 H 0.02 0.21 8.09 -51.93 -0.42 -0.21 16 26 H 0.07 0.77 8.12 -51.92 -0.42 0.35 16 27 H 0.08 1.08 7.65 -51.93 -0.40 0.68 16 28 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16 29 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.44 7.72 -51.93 -0.40 0.04 16 32 H 0.08 0.83 7.89 -51.93 -0.41 0.42 16 33 H 0.40 6.91 8.82 -40.82 -0.36 6.55 16 34 H 0.11 2.87 5.89 -52.49 -0.31 2.56 16 35 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 38 H 0.13 3.37 6.00 -52.49 -0.32 3.05 16 39 H 0.10 0.94 8.05 -51.93 -0.42 0.52 16 40 H 0.10 1.44 8.00 -51.93 -0.42 1.02 16 41 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -30.72 349.01 -9.31 -40.04 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -6.37 Total: 12.40 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -2.75 Total: -18.44 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: -0.50 Total: -41.25 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.72 -9.31 -40.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602158181.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.281 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds