Wall clock time and date at job start Tue Mar 31 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00338 * 2 1 4 4 C 1.50700 * 109.47100 * 90.00153 * 3 2 1 5 5 H 1.08000 * 119.99830 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00163 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99918 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.46715 * 60.00372 * 8 6 4 10 10 H 1.48503 * 109.47036 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47416 * 300.00300 * 8 6 4 12 12 C 1.34771 * 119.99865 * 180.02562 * 2 1 3 13 13 O 1.21290 * 120.00065 * 185.33574 * 12 2 1 14 14 C 1.50699 * 120.00211 * 5.32660 * 12 2 1 15 15 H 1.08996 * 109.44063 * 331.44037 * 14 12 2 16 16 C 1.53043 * 109.43747 * 91.36141 * 14 12 2 17 17 C 1.53356 * 107.95309 * 167.40745 * 16 14 12 18 18 N 1.46429 * 108.62415 * 291.73778 * 17 16 14 19 19 C 1.46900 * 111.00055 * 287.85799 * 18 17 16 20 20 C 1.39402 * 113.12983 * 53.40647 * 18 17 16 21 21 C 1.39610 * 117.65367 * 160.17658 * 20 18 17 22 22 C 1.37808 * 120.41923 * 179.27095 * 21 20 18 23 23 C 1.38303 * 119.95087 * 0.02562 * 22 21 20 24 24 C 1.38051 * 119.89495 * 0.13524 * 23 22 21 25 25 C 1.38375 * 122.95369 * 339.70438 * 20 18 17 26 26 H 1.08992 * 109.47590 * 95.43342 * 1 2 3 27 27 H 1.08997 * 109.47017 * 215.43929 * 1 2 3 28 28 H 1.09007 * 109.47049 * 335.43260 * 1 2 3 29 29 H 1.08995 * 109.47307 * 210.00483 * 3 2 1 30 30 H 1.09008 * 109.47004 * 330.00498 * 3 2 1 31 31 H 0.97003 * 120.00127 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.76948 * 286.97882 * 16 14 12 33 33 H 1.09005 * 109.76937 * 47.75347 * 16 14 12 34 34 H 1.08993 * 109.61639 * 172.00376 * 17 16 14 35 35 H 1.08996 * 109.62708 * 51.47997 * 17 16 14 36 36 H 1.09001 * 109.47040 * 190.68695 * 19 18 17 37 37 H 1.09008 * 109.47160 * 310.67814 * 19 18 17 38 38 H 1.08995 * 109.47356 * 70.68240 * 19 18 17 39 39 H 1.08006 * 119.78855 * 359.24403 * 21 20 18 40 40 H 1.08006 * 120.02616 * 180.02562 * 22 21 20 41 41 H 1.08009 * 120.05637 * 180.16400 * 23 22 21 42 42 H 1.07995 * 119.75986 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4488 1.7037 1.4208 5 1 2.0982 1.0957 2.2417 6 6 3.1262 2.8778 1.6728 7 7 3.5526 3.6185 0.6732 8 14 3.4369 3.4174 3.4340 9 1 4.2397 2.3828 4.1342 10 1 4.1786 4.7040 3.4340 11 1 2.1393 3.5946 4.1338 12 6 2.1388 -1.1672 -0.0005 13 8 3.3478 -1.1695 0.0972 14 6 1.3902 -2.4694 -0.1223 15 1 0.3904 -2.3535 0.2960 16 6 1.2829 -2.8591 -1.5984 17 6 0.8091 -4.3159 -1.6694 18 7 1.8765 -5.1801 -1.1615 19 6 2.9923 -5.2539 -2.1142 20 6 2.3250 -4.8094 0.1053 21 6 3.0091 -5.7670 0.8564 22 6 3.4905 -5.4572 2.1099 23 6 3.2962 -4.1908 2.6307 24 6 2.6175 -3.2407 1.8941 25 6 2.1288 -3.5455 0.6333 26 1 -0.3634 -0.0973 -1.0229 27 1 -0.3633 -0.8372 0.5959 28 1 -0.3633 0.9347 0.4273 29 1 3.1499 1.1384 -0.5139 30 1 1.6084 2.0284 -0.5138 31 1 4.0295 4.4444 0.8505 32 1 0.5617 -2.2128 -2.0988 33 1 2.2578 -2.7642 -2.0766 34 1 0.5871 -4.5784 -2.7037 35 1 -0.0845 -4.4405 -1.0579 36 1 3.6806 -6.0413 -1.8072 37 1 2.6064 -5.4762 -3.1091 38 1 3.5176 -4.2991 -2.1332 39 1 3.1616 -6.7571 0.4525 40 1 4.0193 -6.2029 2.6852 41 1 3.6751 -3.9454 3.6119 42 1 2.4666 -2.2526 2.3030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611014778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:04 Heat of formation + Delta-G solvation = 3.799754 kcal Electronic energy + Delta-G solvation = -23556.404576 eV Core-core repulsion = 20308.443526 eV Total energy + Delta-G solvation = -3247.961050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.84954 -38.62468 -36.88694 -34.84083 -33.71380 -32.50350 -30.29006 -29.78232 -28.21954 -27.06494 -25.77106 -24.49689 -23.18978 -22.86165 -21.68730 -19.57316 -18.43367 -16.88960 -16.61859 -16.45586 -16.07348 -15.50275 -15.15229 -14.64990 -14.35919 -14.27763 -13.96997 -13.61932 -13.13724 -13.00217 -12.87743 -12.55410 -12.29869 -12.21507 -12.02603 -11.97457 -11.81205 -11.65860 -11.24723 -11.20991 -10.93027 -10.78557 -10.63187 -10.50170 -10.16755 -9.66151 -9.39294 -8.80928 -8.47710 -8.44152 -7.84194 -7.66500 -6.05351 -4.10086 1.50049 1.61079 3.30804 3.33407 3.35586 3.40374 3.72662 3.81752 4.11651 4.43987 4.68748 4.77591 4.84968 5.02982 5.19070 5.24982 5.26941 5.28694 5.39560 5.44393 5.47965 5.52960 5.60995 5.67225 5.73159 5.77113 5.77954 5.90399 5.99016 6.09415 6.19646 6.26060 6.42618 6.60509 6.78199 6.90350 7.00838 7.04715 7.39860 7.45708 7.51831 7.90559 8.21760 8.38580 8.88549 9.07515 9.54981 11.02752 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.020260 B = 0.004950 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.697820 B = 5655.025562 C = 6474.081501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.602 5.602 3 C 0.247 3.753 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.511 3.489 13 O -0.530 6.530 14 C -0.071 4.071 15 H 0.100 0.900 16 C -0.144 4.144 17 C 0.059 3.941 18 N -0.503 5.503 19 C 0.027 3.973 20 C 0.109 3.891 21 C -0.127 4.127 22 C -0.110 4.110 23 C -0.134 4.134 24 C -0.076 4.076 25 C -0.092 4.092 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.862 -17.234 -3.519 18.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.334 5.334 3 C 0.128 3.872 4 C -0.564 4.564 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.297 3.703 13 O -0.406 6.406 14 C -0.093 4.093 15 H 0.117 0.883 16 C -0.183 4.183 17 C -0.068 4.068 18 N -0.220 5.220 19 C -0.118 4.118 20 C 0.013 3.987 21 C -0.147 4.147 22 C -0.129 4.129 23 C -0.153 4.153 24 C -0.094 4.094 25 C -0.095 4.095 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.317 -17.493 -3.539 18.932 hybrid contribution 0.408 1.316 0.971 1.686 sum -5.908 -16.178 -2.567 17.413 Atomic orbital electron populations 1.21675 0.81568 1.02802 1.00106 1.48177 1.06095 1.07732 1.71405 1.19285 0.92375 0.78034 0.97540 1.21370 1.36591 1.06186 0.92225 0.92572 1.24929 0.95338 0.96375 0.97414 1.69920 1.38383 1.14367 1.30796 0.86567 0.78378 0.77849 0.84701 1.20161 1.21146 1.20237 1.20011 0.88009 0.84492 0.77820 1.90698 1.14048 1.86816 1.49044 1.20383 0.99846 0.92627 0.96429 0.88270 1.22102 1.03280 0.98265 0.94684 1.22238 0.94114 0.89461 1.01034 1.58786 1.11065 1.50842 1.01270 1.22471 0.92735 1.01514 0.95098 1.18359 0.97755 0.91526 0.91023 1.20880 1.00692 0.98495 0.94624 1.20922 0.99798 0.96677 0.95492 1.21031 1.00299 0.93643 1.00288 1.21055 0.95857 0.99149 0.93385 1.19454 1.01753 0.92410 0.95904 0.93793 0.92573 0.90476 0.94092 0.95004 0.92663 0.90095 0.90708 0.89690 0.89947 0.91043 0.90975 0.94266 0.86044 0.86196 0.86185 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.05 59.85 0.60 1.90 16 2 N -0.60 -12.74 2.86 -182.95 -0.52 -13.27 16 3 C 0.25 6.47 5.10 -5.19 -0.03 6.44 16 4 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 8 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.51 10.71 5.72 -10.99 -0.06 10.65 16 13 O -0.53 -13.58 15.30 5.55 0.08 -13.49 16 14 C -0.07 -1.13 2.18 -92.85 -0.20 -1.34 16 15 H 0.10 1.38 5.86 -51.93 -0.30 1.07 16 16 C -0.14 -1.89 5.32 -26.52 -0.14 -2.03 16 17 C 0.06 0.64 5.82 -3.90 -0.02 0.62 16 18 N -0.50 -6.25 4.74 -179.15 -0.85 -7.10 16 19 C 0.03 0.30 9.06 60.06 0.54 0.85 16 20 C 0.11 1.60 5.11 -83.85 -0.43 1.17 16 21 C -0.13 -1.70 9.41 -39.23 -0.37 -2.07 16 22 C -0.11 -1.44 10.03 -39.71 -0.40 -1.84 16 23 C -0.13 -2.00 10.05 -39.63 -0.40 -2.40 16 24 C -0.08 -1.31 8.48 -39.51 -0.34 -1.65 16 25 C -0.09 -1.52 5.07 -104.38 -0.53 -2.05 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.74 6.18 -51.93 -0.32 0.42 16 28 H 0.08 1.24 8.03 -51.93 -0.42 0.83 16 29 H 0.04 1.22 7.50 -51.93 -0.39 0.83 16 30 H 0.03 0.84 8.07 -51.92 -0.42 0.42 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.12 6.58 -51.93 -0.34 0.78 16 34 H 0.08 0.73 7.87 -51.93 -0.41 0.33 16 35 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 36 H 0.07 0.73 7.89 -51.93 -0.41 0.32 16 37 H 0.07 0.63 7.88 -51.92 -0.41 0.22 16 38 H 0.04 0.51 6.91 -51.93 -0.36 0.15 16 39 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 40 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 41 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.12 2.33 7.35 -52.49 -0.39 1.94 16 LS Contribution 338.11 15.07 5.10 5.10 Total: -1.00 -33.67 338.11 -8.91 -42.58 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.25 Total: 0.55 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.19 Total: -5.33 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.64 Total: -46.35 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.67 -8.91 -42.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611014778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.377 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds