Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46432 * 111.00041 * 2 1 4 4 C 1.53376 * 108.65681 * 72.15907 * 3 2 1 5 5 C 1.53043 * 107.92888 * 68.24734 * 4 3 2 6 6 H 1.08997 * 109.44029 * 72.76165 * 5 4 3 7 7 C 1.50703 * 109.41006 * 192.67134 * 5 4 3 8 8 O 1.21278 * 120.00180 * 35.82927 * 7 5 4 9 9 N 1.34782 * 119.99739 * 215.83088 * 7 5 4 10 10 C 1.46500 * 119.99286 * 185.07975 * 9 7 5 11 11 C 1.53005 * 109.46408 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46881 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99922 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00049 * 180.02562 * 12 11 10 15 15 N 1.31508 * 119.99662 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99855 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47292 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46900 * 119.99960 * 16 14 12 19 19 H 1.48497 * 109.46997 * 239.99589 * 16 14 12 20 20 C 1.50807 * 109.65971 * 312.70493 * 5 4 3 21 21 C 1.38609 * 118.12660 * 195.38874 * 20 5 4 22 22 C 1.38055 * 120.49205 * 180.59103 * 21 20 5 23 23 C 1.38316 * 119.88174 * 359.58121 * 22 21 20 24 24 C 1.37797 * 119.95595 * 0.37667 * 23 22 21 25 25 C 1.38373 * 122.01040 * 15.63199 * 20 5 4 26 26 H 1.09002 * 109.46847 * 60.00373 * 1 2 3 27 27 H 1.09000 * 109.47212 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47436 * 300.00394 * 1 2 3 29 29 H 1.09007 * 109.59994 * 312.41224 * 3 2 1 30 30 H 1.08997 * 109.74546 * 191.99653 * 3 2 1 31 31 H 1.09005 * 109.77366 * 308.64265 * 4 3 2 32 32 H 1.09001 * 109.81591 * 187.87786 * 4 3 2 33 33 H 0.96997 * 120.00056 * 5.07907 * 9 7 5 34 34 H 1.08997 * 109.47436 * 299.99712 * 10 9 7 35 35 H 1.08997 * 109.47240 * 60.00542 * 10 9 7 36 36 H 1.08997 * 109.47199 * 299.99994 * 11 10 9 37 37 H 1.08997 * 109.46866 * 60.00449 * 11 10 9 38 38 H 0.97005 * 119.99805 * 180.02562 * 15 14 12 39 39 H 1.08008 * 119.75499 * 0.32050 * 21 20 5 40 40 H 1.07995 * 120.06002 * 179.82415 * 22 21 20 41 41 H 1.07997 * 120.01829 * 180.12365 * 23 22 21 42 42 H 1.08005 * 119.79276 * 179.70214 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9938 1.3671 0.0000 4 6 1.7540 1.9847 1.3833 5 6 2.6496 1.2546 2.3869 6 1 3.6859 1.5560 2.2344 7 6 2.2247 1.6101 3.7884 8 8 1.0508 1.7793 4.0416 9 7 3.1494 1.7400 4.7603 10 6 2.7294 1.9754 6.1440 11 6 3.9646 2.0834 7.0404 12 6 3.5327 2.3249 8.4638 13 1 2.4822 2.3940 8.7050 14 6 4.4786 2.4577 9.4582 15 7 5.7577 2.3731 9.1645 16 14 3.9431 2.7563 11.2227 17 1 2.4606 2.8096 11.2878 18 1 4.4376 1.6520 12.0837 19 1 4.5057 4.0453 11.6993 20 6 2.5256 -0.2350 2.1876 21 6 2.9941 -1.0696 3.1902 22 6 2.9161 -2.4412 3.0533 23 6 2.3590 -2.9893 1.9121 24 6 1.8904 -2.1659 0.9115 25 6 1.9686 -0.7781 1.0432 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.4782 1.9566 -0.7582 30 1 3.0626 1.3512 -0.2132 31 1 0.7082 1.8624 1.6655 32 1 2.0091 3.0442 1.3642 33 1 4.0928 1.6777 4.5437 34 1 2.1587 2.9025 6.1978 35 1 2.1078 1.1460 6.4811 36 1 4.5349 1.1561 6.9864 37 1 4.5866 2.9127 6.7034 38 1 6.4231 2.4662 9.8641 39 1 3.4273 -0.6439 4.0833 40 1 3.2858 -3.0850 3.8377 41 1 2.2951 -4.0619 1.8037 42 1 1.4603 -2.5968 0.0194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612333938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = -36.807012 kcal Electronic energy + Delta-G solvation = -22735.282004 eV Core-core repulsion = 19485.560113 eV Total energy + Delta-G solvation = -3249.721892 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.07922 -40.26029 -37.96141 -36.66666 -35.07407 -34.72232 -31.67131 -31.29921 -30.88212 -28.45721 -26.83682 -25.42098 -24.18691 -23.49984 -22.73459 -21.61323 -20.39559 -18.74992 -18.34937 -17.73413 -17.26963 -16.84923 -16.65750 -16.45347 -16.16484 -15.44567 -15.30945 -15.05422 -14.77718 -14.69636 -14.38015 -14.15817 -13.85869 -13.36314 -13.27024 -13.12904 -13.02032 -12.96362 -12.82079 -12.54517 -12.37180 -12.27198 -11.90419 -11.72058 -11.66884 -11.48202 -10.98831 -10.63507 -10.31754 -10.08895 -9.71838 -8.91698 -8.26600 -6.37185 0.31427 0.39770 1.39139 1.40251 1.52897 1.53324 2.17045 2.41767 2.69365 2.92440 3.08206 3.48643 3.62325 3.74980 3.90924 4.12120 4.20232 4.23985 4.32864 4.41977 4.44623 4.49250 4.50936 4.57810 4.58034 4.69452 4.79538 4.80110 4.85816 4.98462 5.05253 5.16980 5.23899 5.34847 5.44398 5.45649 5.54088 5.59710 5.75333 5.80368 5.99910 6.13031 6.36580 6.53101 6.75769 7.17302 7.32317 8.85360 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.025373 B = 0.003459 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.290911 B = 8092.336592 C = 8680.953026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.502 5.502 3 C 0.060 3.940 4 C -0.142 4.142 5 C -0.058 4.058 6 H 0.121 0.879 7 C 0.519 3.481 8 O -0.585 6.585 9 N -0.715 5.715 10 C 0.141 3.859 11 C 0.024 3.976 12 C -0.547 4.547 13 H 0.057 0.943 14 C 0.008 3.992 15 N -0.925 5.925 16 Si 0.964 3.036 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.141 4.141 23 C -0.102 4.102 24 C -0.126 4.126 25 C 0.107 3.893 26 H 0.097 0.903 27 H 0.077 0.923 28 H 0.020 0.980 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.410 0.590 34 H 0.045 0.955 35 H 0.044 0.956 36 H 0.010 0.990 37 H 0.009 0.991 38 H 0.266 0.734 39 H 0.111 0.889 40 H 0.135 0.865 41 H 0.153 0.847 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.677 -7.310 -21.407 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.218 5.218 3 C -0.067 4.067 4 C -0.181 4.181 5 C -0.080 4.080 6 H 0.138 0.862 7 C 0.306 3.694 8 O -0.465 6.465 9 N -0.366 5.366 10 C 0.018 3.982 11 C -0.013 4.013 12 C -0.586 4.586 13 H 0.075 0.925 14 C -0.190 4.190 15 N -0.565 5.565 16 Si 0.789 3.211 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.159 4.159 23 C -0.121 4.121 24 C -0.145 4.145 25 C 0.011 3.989 26 H 0.116 0.884 27 H 0.096 0.904 28 H 0.038 0.962 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.246 0.754 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.075 0.925 39 H 0.129 0.871 40 H 0.153 0.847 41 H 0.171 0.829 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.223 -7.367 -21.604 23.659 hybrid contribution 0.312 0.649 2.102 2.222 sum -5.911 -6.718 -19.502 21.457 Atomic orbital electron populations 1.22567 0.84362 1.03279 1.01711 1.58897 1.08988 1.13548 1.40383 1.22339 1.02366 0.86699 0.95302 1.22138 0.99484 1.00842 0.95660 1.20268 1.03192 0.93358 0.91134 0.86159 1.20924 0.85431 0.75477 0.87534 1.90632 1.19619 1.52337 1.83921 1.46264 1.10340 1.71969 1.07992 1.21224 0.98054 0.99115 0.79853 1.19126 0.92355 0.96373 0.93493 1.21477 0.93355 1.50092 0.93641 0.92486 1.25856 0.94856 0.94602 1.03732 1.70059 1.01024 1.50571 1.34811 0.85403 0.78690 0.78007 0.78996 1.19076 1.20119 1.20142 1.19555 1.04798 0.93506 0.94784 1.21235 0.99811 0.94862 0.98132 1.21316 1.00899 0.94398 0.99330 1.21342 0.96783 1.01167 0.92761 1.21282 1.01839 0.91125 1.00270 1.18650 0.98023 0.93524 0.88706 0.88407 0.90426 0.96152 0.87070 0.89029 0.91898 0.89002 0.75406 0.93651 0.93806 0.97216 0.97261 0.92494 0.87121 0.84712 0.82931 0.83617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.28 127.69 1.19 1.63 16 2 N -0.50 -9.77 4.74 -720.62 -3.42 -13.19 16 3 C 0.06 1.01 5.81 86.52 0.50 1.51 16 4 C -0.14 -3.16 5.20 30.73 0.16 -3.00 16 5 C -0.06 -1.52 2.67 -12.24 -0.03 -1.55 16 6 H 0.12 2.55 8.08 -2.39 -0.02 2.53 16 7 C 0.52 18.07 5.84 87.66 0.51 18.58 16 8 O -0.58 -25.14 16.06 -3.02 -0.05 -25.18 16 9 N -0.72 -25.39 4.81 -463.05 -2.23 -27.62 16 10 C 0.14 6.19 5.62 86.38 0.49 6.67 16 11 C 0.02 1.22 5.09 29.85 0.15 1.37 16 12 C -0.55 -30.78 9.11 25.60 0.23 -30.55 16 13 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 14 C 0.01 0.48 5.46 84.66 0.46 0.94 16 15 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16 16 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 C -0.12 -3.30 5.40 -19.71 -0.11 -3.40 16 21 C -0.12 -3.40 9.07 22.31 0.20 -3.19 16 22 C -0.14 -3.34 10.05 22.24 0.22 -3.11 16 23 C -0.10 -2.00 10.03 22.18 0.22 -1.78 16 24 C -0.13 -2.55 9.25 22.50 0.21 -2.34 16 25 C 0.11 2.52 5.12 38.30 0.20 2.71 16 26 H 0.10 1.19 8.11 -2.39 -0.02 1.17 16 27 H 0.08 1.22 7.64 -2.39 -0.02 1.20 16 28 H 0.02 0.43 6.50 -2.39 -0.02 0.42 16 29 H 0.11 1.34 8.02 -2.38 -0.02 1.32 16 30 H 0.09 1.42 8.11 -2.39 -0.02 1.40 16 31 H 0.06 1.72 5.73 -2.38 -0.01 1.71 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.41 12.54 8.43 -92.71 -0.78 11.76 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 39 H 0.11 3.34 6.81 -2.91 -0.02 3.32 16 40 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 41 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 42 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -69.44 341.12 1.46 -67.99 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.23 Total: 21.65 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 4.61 Total: -15.51 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -5.36 Total: -94.71 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.05 Total: -25.18 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -69.44 1.46 -67.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612333938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.180 kcal (2) G-P(sol) polarization free energy of solvation -69.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds