Wall clock time and date at job start Tue Mar 31 2020 07:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09010 * 109.46369 * 2 1 4 4 N 1.46899 * 109.47067 * 119.99795 * 2 1 3 5 5 C 1.52992 * 109.47105 * 239.99937 * 2 1 3 6 6 H 1.09000 * 109.47452 * 304.95555 * 5 2 1 7 7 C 1.53008 * 109.47099 * 184.95417 * 5 2 1 8 8 C 1.50700 * 109.47243 * 175.92229 * 7 5 2 9 9 C 1.38235 * 120.00073 * 271.68341 * 8 7 5 10 10 C 1.38234 * 120.00112 * 179.76781 * 9 8 7 11 11 C 1.38235 * 119.99532 * 0.50289 * 10 9 8 12 12 C 1.38233 * 120.00387 * 359.74913 * 11 10 9 13 13 C 1.38235 * 119.99707 * 91.95414 * 8 7 5 14 14 N 1.46907 * 109.47240 * 64.96242 * 5 2 1 15 15 C 1.46904 * 110.99316 * 253.49608 * 14 5 2 16 16 C 1.53004 * 109.46619 * 175.14018 * 15 14 5 17 17 C 1.50697 * 115.56627 * 39.67060 * 16 15 14 18 18 H 1.08000 * 119.99761 * 269.84164 * 17 16 15 19 19 C 1.37875 * 120.00275 * 89.83090 * 17 16 15 20 20 N 1.31508 * 120.00361 * 179.27869 * 19 17 16 21 21 Si 1.86799 * 119.99789 * 359.28103 * 19 17 16 22 22 H 1.48507 * 109.46942 * 87.64794 * 21 19 17 23 23 H 1.48499 * 109.47343 * 207.64281 * 21 19 17 24 24 H 1.48497 * 109.47474 * 327.65266 * 21 19 17 25 25 C 1.53000 * 117.49596 * 185.35980 * 16 15 14 26 26 C 1.53005 * 60.03199 * 107.47619 * 25 16 15 27 27 H 1.08998 * 109.46684 * 174.28617 * 1 2 3 28 28 H 1.08997 * 109.46875 * 294.29126 * 1 2 3 29 29 H 1.09000 * 109.46668 * 54.29027 * 1 2 3 30 30 H 1.00906 * 110.99918 * 296.04832 * 4 2 1 31 31 H 1.00895 * 110.99734 * 59.99996 * 4 2 1 32 32 H 1.09001 * 109.46995 * 295.92938 * 7 5 2 33 33 H 1.09005 * 109.46424 * 55.92548 * 7 5 2 34 34 H 1.08006 * 120.00068 * 359.97438 * 9 8 7 35 35 H 1.07991 * 120.00112 * 180.23255 * 10 9 8 36 36 H 1.08004 * 119.99471 * 179.72427 * 11 10 9 37 37 H 1.08001 * 120.00061 * 179.97438 * 12 11 10 38 38 H 1.07996 * 120.00311 * 0.02562 * 13 8 7 39 39 H 1.00897 * 110.99866 * 17.44618 * 14 5 2 40 40 H 1.09000 * 109.47485 * 55.14243 * 15 14 5 41 41 H 1.09000 * 109.47311 * 295.13735 * 15 14 5 42 42 H 0.97000 * 120.00539 * 180.02562 * 20 19 17 43 43 H 1.09002 * 117.49603 * 214.97329 * 25 16 15 44 44 H 1.08994 * 117.50311 * 359.97438 * 25 16 15 45 45 H 1.09004 * 117.49670 * 107.50246 * 26 25 16 46 46 H 1.08998 * 117.49859 * 252.51697 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0400 -0.7212 -1.2492 6 1 1.6061 -1.7201 -1.2947 7 6 3.5650 -0.8300 -1.1884 8 6 4.0592 -1.6273 -2.3679 9 6 4.1554 -3.0036 -2.2804 10 6 4.6041 -3.7354 -3.3639 11 6 4.9664 -3.0900 -4.5314 12 6 4.8751 -1.7134 -4.6172 13 6 4.4215 -0.9820 -3.5354 14 7 1.6506 0.0370 -2.4457 15 6 0.5621 -0.6379 -3.1652 16 6 0.1028 0.2379 -4.3328 17 6 1.1996 0.9465 -5.0849 18 1 1.5150 1.9327 -4.7777 19 6 1.8006 0.3359 -6.1651 20 7 2.7480 0.9600 -6.8303 21 14 1.2691 -1.3781 -6.6839 22 1 0.1274 -1.2777 -7.6283 23 1 2.4032 -2.0677 -7.3501 24 1 0.8541 -2.1515 -5.4861 25 6 -1.1127 -0.2333 -5.1337 26 6 -1.2376 0.9628 -4.1877 27 1 -0.3632 -1.0226 -0.1023 28 1 -0.3633 0.4228 0.9367 29 1 -0.3633 0.5998 -0.8345 30 1 1.7502 -0.1989 2.0373 31 1 1.6962 -1.6478 1.2228 32 1 4.0019 0.1683 -1.2159 33 1 3.8571 -1.3291 -0.2644 34 1 3.8769 -3.5074 -1.3665 35 1 4.6758 -4.8108 -3.2968 36 1 5.3212 -3.6614 -5.3764 37 1 5.1586 -1.2092 -5.5293 38 1 4.3508 0.0936 -3.6022 39 1 1.3941 0.9830 -2.2066 40 1 -0.2737 -0.8052 -2.4858 41 1 0.9174 -1.5951 -3.5468 42 1 3.1705 0.5306 -7.5905 43 1 -1.1189 -0.0306 -6.2047 44 1 -1.5848 -1.1672 -4.8293 45 1 -1.3261 1.9522 -4.6364 46 1 -1.7917 0.8155 -3.2607 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423106308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:22 Heat of formation + Delta-G solvation = 47.793136 kcal Electronic energy + Delta-G solvation = -24310.346613 eV Core-core repulsion = 21200.126353 eV Total energy + Delta-G solvation = -3110.220260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.02198 -37.82825 -36.63648 -33.44129 -31.93646 -31.83615 -30.17917 -28.52332 -28.00654 -25.64283 -24.39510 -22.80578 -21.87007 -21.62631 -20.64526 -20.03479 -18.72744 -16.32195 -16.28836 -16.04746 -15.27538 -14.67108 -14.57925 -14.49970 -14.07855 -13.75928 -13.50470 -13.25874 -12.84542 -12.72100 -12.70181 -12.48138 -12.31497 -12.10036 -11.99230 -11.58618 -11.26110 -11.18911 -10.98265 -10.62471 -10.42720 -10.35917 -10.24279 -10.17010 -9.93441 -9.44451 -9.00324 -8.74759 -8.38941 -8.38342 -8.21927 -8.01143 -7.44789 -5.93024 -3.91116 2.02223 2.11466 3.40271 3.50582 3.55791 4.43848 4.46963 4.59017 4.82052 4.85719 5.05888 5.16943 5.30071 5.37637 5.44710 5.50267 5.62107 5.66287 5.73725 5.82462 5.90825 5.95907 6.04966 6.09009 6.12521 6.15899 6.20087 6.26509 6.30768 6.41666 6.47415 6.53061 6.63469 6.74293 6.77721 6.79923 7.07092 7.07947 7.10965 7.18618 7.27248 7.38261 7.42481 7.72236 7.82425 7.98229 8.23085 8.66247 9.08658 9.72608 11.19150 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.011325 B = 0.009099 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.908751 B = 3076.590693 C = 4807.992946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.064 3.936 3 H 0.084 0.916 4 N -0.838 5.838 5 C 0.100 3.900 6 H 0.058 0.942 7 C -0.055 4.055 8 C -0.067 4.067 9 C -0.132 4.132 10 C -0.135 4.135 11 C -0.136 4.136 12 C -0.114 4.114 13 C -0.065 4.065 14 N -0.643 5.643 15 C 0.100 3.900 16 C 0.007 3.993 17 C -0.455 4.455 18 H 0.076 0.924 19 C 0.088 3.912 20 N -0.900 5.900 21 Si 0.876 3.124 22 H -0.289 1.289 23 H -0.298 1.298 24 H -0.264 1.264 25 C -0.206 4.206 26 C -0.188 4.188 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.336 0.664 31 H 0.336 0.664 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.130 0.870 39 H 0.338 0.662 40 H 0.002 0.998 41 H 0.060 0.940 42 H 0.260 0.740 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 -5.565 12.866 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.049 4.049 3 H 0.102 0.898 4 N -0.366 5.366 5 C -0.011 4.011 6 H 0.077 0.923 7 C -0.094 4.094 8 C -0.067 4.067 9 C -0.150 4.150 10 C -0.153 4.153 11 C -0.154 4.154 12 C -0.132 4.132 13 C -0.083 4.083 14 N -0.273 5.273 15 C -0.029 4.029 16 C 0.006 3.994 17 C -0.493 4.493 18 H 0.094 0.906 19 C -0.113 4.113 20 N -0.539 5.539 21 Si 0.706 3.294 22 H -0.215 1.215 23 H -0.225 1.225 24 H -0.188 1.188 25 C -0.243 4.243 26 C -0.225 4.225 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.020 0.980 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.105 0.895 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.676 -5.706 12.013 13.316 hybrid contribution -2.340 -1.049 0.189 2.571 sum -1.663 -6.755 12.201 14.045 Atomic orbital electron populations 1.22690 0.98016 1.02025 1.02079 1.22202 0.91934 0.99149 0.91581 0.89814 1.58918 1.67174 1.06336 1.04189 1.21581 0.95334 0.96682 0.87549 0.92326 1.20504 0.94441 0.99565 0.94844 1.19805 0.97744 0.93148 0.96045 1.20885 1.01922 0.93939 0.98226 1.20896 1.01621 0.98814 0.93985 1.21021 1.01923 0.94978 0.97500 1.21207 0.99361 0.93826 0.98839 1.21111 0.94733 1.00864 0.91578 1.60375 1.41676 1.04601 1.20670 1.21730 0.90090 0.97390 0.93681 1.19554 0.87923 0.96782 0.95175 1.19961 1.15707 1.02771 1.10827 0.90566 1.24741 0.94349 0.96369 0.95888 1.69877 1.25831 1.37746 1.20410 0.86953 0.77151 0.86450 0.78829 1.21548 1.22485 1.18846 1.22934 1.06464 0.96995 0.97947 1.22906 1.03848 0.96392 0.99369 0.92958 0.93074 0.91498 0.85201 0.85151 0.91366 0.90558 0.87321 0.87377 0.87356 0.86531 0.85198 0.84312 0.97986 0.92144 0.93063 0.89494 0.91415 0.89679 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.16 8.35 37.16 0.31 -1.85 16 2 C 0.06 0.76 2.76 -67.71 -0.19 0.57 16 3 H 0.08 1.05 8.06 -51.92 -0.42 0.63 16 4 N -0.84 -8.31 8.18 -4.66 -0.04 -8.35 16 5 C 0.10 1.46 1.92 -67.71 -0.13 1.33 16 6 H 0.06 0.92 7.59 -51.93 -0.39 0.52 16 7 C -0.06 -0.83 4.89 -27.88 -0.14 -0.97 16 8 C -0.07 -1.17 4.91 -104.62 -0.51 -1.68 16 9 C -0.13 -2.14 9.71 -39.58 -0.38 -2.52 16 10 C -0.14 -2.21 10.05 -39.58 -0.40 -2.61 16 11 C -0.14 -2.42 10.05 -39.58 -0.40 -2.82 16 12 C -0.11 -2.26 10.05 -39.58 -0.40 -2.66 16 13 C -0.06 -1.28 9.38 -39.58 -0.37 -1.65 16 14 N -0.64 -11.46 4.86 -106.72 -0.52 -11.98 16 15 C 0.10 1.99 5.05 -3.82 -0.02 1.97 16 16 C 0.01 0.15 1.13 -155.62 -0.18 -0.02 16 17 C -0.46 -12.01 8.77 -34.44 -0.30 -12.31 16 18 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 19 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 20 N -0.90 -26.51 13.96 55.43 0.77 -25.74 16 21 Si 0.88 22.43 24.86 -169.99 -4.23 18.20 16 22 H -0.29 -7.36 7.00 56.52 0.40 -6.96 16 23 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 24 H -0.26 -6.60 5.66 56.52 0.32 -6.28 16 25 C -0.21 -4.42 7.53 -26.73 -0.20 -4.62 16 26 C -0.19 -3.72 9.89 -26.69 -0.26 -3.99 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.87 6.88 -51.93 -0.36 0.51 16 30 H 0.34 2.78 9.07 -39.29 -0.36 2.42 16 31 H 0.34 3.11 9.00 -39.29 -0.35 2.75 16 32 H 0.07 1.06 8.07 -51.93 -0.42 0.64 16 33 H 0.08 1.05 7.29 -51.93 -0.38 0.67 16 34 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 36 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 38 H 0.13 2.76 8.06 -52.49 -0.42 2.34 16 39 H 0.34 5.95 7.65 -39.29 -0.30 5.65 16 40 H 0.00 0.04 6.51 -51.93 -0.34 -0.30 16 41 H 0.06 1.36 6.66 -51.93 -0.35 1.01 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.09 2.00 6.85 -51.93 -0.36 1.64 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 46 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -28.49 362.46 -10.10 -38.60 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -7.89 Total: 15.28 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: -3.67 Total: -31.47 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.22 Total: -46.06 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.23 Total: 18.20 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.49 -10.10 -38.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423106308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.389 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds