Wall clock time and date at job start Tue Mar 31 2020 07:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46768 * 2 1 4 4 N 1.46894 * 109.47669 * 119.99729 * 2 1 3 5 5 C 1.53002 * 109.47374 * 240.00413 * 2 1 3 6 6 H 1.09003 * 109.46422 * 305.48670 * 5 2 1 7 7 C 1.52995 * 109.47135 * 65.48129 * 5 2 1 8 8 C 1.50698 * 109.46874 * 185.60391 * 7 5 2 9 9 C 1.38231 * 120.00476 * 263.07153 * 8 7 5 10 10 C 1.38242 * 120.00127 * 179.76668 * 9 8 7 11 11 C 1.38237 * 119.99942 * 0.51108 * 10 9 8 12 12 C 1.38235 * 119.99826 * 359.74447 * 11 10 9 13 13 C 1.38237 * 119.99732 * 83.34928 * 8 7 5 14 14 N 1.46897 * 109.47298 * 185.48811 * 5 2 1 15 15 C 1.46904 * 111.00131 * 86.93841 * 14 5 2 16 16 C 1.52998 * 109.47156 * 86.46636 * 15 14 5 17 17 C 1.50694 * 115.54881 * 39.62566 * 16 15 14 18 18 H 1.08002 * 120.00337 * 265.93316 * 17 16 15 19 19 C 1.37880 * 120.00291 * 85.93770 * 17 16 15 20 20 N 1.31511 * 120.00486 * 180.72534 * 19 17 16 21 21 Si 1.86798 * 119.99604 * 0.72433 * 19 17 16 22 22 H 1.48502 * 109.47202 * 92.32740 * 21 19 17 23 23 H 1.48503 * 109.46995 * 212.32716 * 21 19 17 24 24 H 1.48499 * 109.47308 * 332.32884 * 21 19 17 25 25 C 1.53002 * 117.49985 * 253.91733 * 16 15 14 26 26 C 1.53000 * 60.00119 * 252.51376 * 25 16 15 27 27 H 1.09004 * 109.46768 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47406 * 60.00164 * 1 2 3 29 29 H 1.09003 * 109.47022 * 299.99732 * 1 2 3 30 30 H 1.00903 * 110.99923 * 65.21634 * 4 2 1 31 31 H 1.00897 * 111.00496 * 189.17511 * 4 2 1 32 32 H 1.08994 * 109.47469 * 305.61007 * 7 5 2 33 33 H 1.09005 * 109.46785 * 65.61321 * 7 5 2 34 34 H 1.08001 * 119.99984 * 0.02562 * 9 8 7 35 35 H 1.08001 * 119.99746 * 180.23447 * 10 9 8 36 36 H 1.07993 * 119.99667 * 179.72717 * 11 10 9 37 37 H 1.08003 * 119.99993 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.99988 * 359.97438 * 13 8 7 39 39 H 1.00900 * 110.99874 * 210.89290 * 14 5 2 40 40 H 1.08995 * 109.46976 * 206.47059 * 15 14 5 41 41 H 1.09003 * 109.46657 * 326.46454 * 15 14 5 42 42 H 0.96991 * 120.00143 * 179.97438 * 20 19 17 43 43 H 1.09001 * 117.49510 * 0.02562 * 25 16 15 44 44 H 1.08995 * 117.49845 * 145.02090 * 25 16 15 45 45 H 1.09001 * 117.49392 * 252.51472 * 26 25 16 46 46 H 1.08997 * 117.52388 * 107.47893 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 2.0400 -0.7212 -1.2493 6 1 1.5987 -1.7165 -1.2998 7 6 1.6457 0.0753 -2.4946 8 6 2.0261 -0.7013 -3.7288 9 6 3.2143 -0.4265 -4.3796 10 6 3.5654 -1.1422 -5.5090 11 6 2.7234 -2.1256 -5.9936 12 6 1.5327 -2.3968 -5.3459 13 6 1.1840 -1.6847 -4.2135 14 7 3.5030 -0.8369 -1.1849 15 6 3.9038 -2.0463 -0.4535 16 6 3.9525 -3.2329 -1.4181 17 6 4.5145 -2.9370 -2.7846 18 1 3.8511 -2.6810 -3.5975 19 6 5.8756 -2.9932 -2.9974 20 7 6.3672 -2.7210 -4.1864 21 14 7.0215 -3.4559 -1.5965 22 1 7.2587 -4.9217 -1.6146 23 1 8.3142 -2.7431 -1.7585 24 1 6.4025 -3.0706 -0.3028 25 6 2.8277 -4.2659 -1.3247 26 6 4.2306 -4.6152 -0.8239 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 1.7680 -1.6693 1.1811 31 1 3.0170 -0.5778 1.3013 32 1 0.5693 0.2468 -2.4906 33 1 2.1663 1.0330 -2.4933 34 1 3.8702 0.3446 -4.0033 35 1 4.4955 -0.9300 -6.0152 36 1 2.9957 -2.6817 -6.8784 37 1 0.8746 -3.1648 -5.7247 38 1 0.2538 -1.8966 -3.7074 39 1 3.9079 -0.8224 -2.1090 40 1 4.8894 -1.8949 -0.0135 41 1 3.1806 -2.2495 0.3364 42 1 7.3247 -2.7602 -4.3359 43 1 2.0527 -4.0998 -0.5765 44 1 2.4938 -4.7315 -2.2520 45 1 4.8196 -5.3107 -1.4218 46 1 4.3792 -4.6791 0.2540 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423106310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:26 Heat of formation + Delta-G solvation = 49.725853 kcal Electronic energy + Delta-G solvation = -24923.978919 eV Core-core repulsion = 21813.842468 eV Total energy + Delta-G solvation = -3110.136451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.26844 -37.75415 -36.38462 -33.05453 -32.05940 -31.76894 -30.12965 -29.20642 -27.26217 -25.58997 -24.42687 -22.70817 -21.83077 -21.61082 -20.53718 -19.59396 -19.00230 -16.27394 -16.19812 -15.69864 -15.03420 -14.99823 -14.76582 -14.56394 -13.97812 -13.74125 -13.58528 -13.31438 -12.84234 -12.67501 -12.47114 -12.23599 -12.03692 -11.85917 -11.72196 -11.30273 -11.13430 -11.07658 -10.99708 -10.69353 -10.44258 -10.39258 -10.29641 -10.24965 -10.08720 -9.59467 -9.07531 -8.60199 -8.42631 -8.29338 -8.03257 -7.87831 -7.41939 -6.07220 -4.09257 2.11741 2.20847 3.30600 3.40858 3.45947 4.46038 4.53250 4.81029 4.91837 5.01606 5.18953 5.25734 5.46301 5.51578 5.60681 5.68248 5.71580 5.79320 5.82336 5.86933 5.93366 5.94494 6.04573 6.12847 6.18326 6.21580 6.26170 6.30095 6.37814 6.43363 6.47360 6.61493 6.69897 6.75898 6.79154 6.85579 7.09263 7.13080 7.18366 7.29837 7.37772 7.48956 7.70754 7.77411 7.78058 7.96207 8.40149 8.59225 9.04268 9.57663 11.01638 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.009448 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.838503 B = 2962.821064 C = 4344.852090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.097 3.903 3 H 0.078 0.922 4 N -0.843 5.843 5 C 0.061 3.939 6 H 0.047 0.953 7 C -0.080 4.080 8 C -0.080 4.080 9 C -0.094 4.094 10 C -0.070 4.070 11 C -0.120 4.120 12 C -0.122 4.122 13 C -0.122 4.122 14 N -0.681 5.681 15 C 0.078 3.922 16 C -0.022 4.022 17 C -0.490 4.490 18 H 0.101 0.899 19 C 0.084 3.916 20 N -0.888 5.888 21 Si 0.872 3.128 22 H -0.286 1.286 23 H -0.298 1.298 24 H -0.257 1.257 25 C -0.181 4.181 26 C -0.205 4.205 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.332 0.668 31 H 0.349 0.651 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.369 0.631 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.261 0.739 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.167 4.212 2.241 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 H 0.096 0.904 4 N -0.374 5.374 5 C -0.051 4.051 6 H 0.065 0.935 7 C -0.118 4.118 8 C -0.081 4.081 9 C -0.112 4.112 10 C -0.088 4.088 11 C -0.138 4.138 12 C -0.140 4.140 13 C -0.141 4.141 14 N -0.318 5.318 15 C -0.053 4.053 16 C -0.024 4.024 17 C -0.528 4.528 18 H 0.119 0.881 19 C -0.119 4.119 20 N -0.525 5.525 21 Si 0.702 3.298 22 H -0.213 1.213 23 H -0.226 1.226 24 H -0.182 1.182 25 C -0.219 4.219 26 C -0.243 4.243 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.145 0.855 31 H 0.164 0.836 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.130 0.870 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.196 0.804 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.393 5.174 3.074 11.155 hybrid contribution 1.341 -2.097 -0.574 2.555 sum -8.051 3.076 2.500 8.974 Atomic orbital electron populations 1.21853 0.95473 1.01535 1.01379 1.21433 0.93882 0.98295 0.87921 0.90411 1.59133 1.20814 1.17495 1.39965 1.22215 0.90958 0.97958 0.93981 0.93508 1.20781 1.00867 0.98319 0.91871 1.19633 0.95153 0.97229 0.96044 1.20809 0.95138 1.00003 0.95255 1.20917 0.97555 0.94509 0.95819 1.20928 0.94587 0.98037 1.00242 1.20880 0.97228 0.99441 0.96463 1.20694 0.99421 0.97077 0.96867 1.61027 1.06509 1.37668 1.26570 1.22051 0.99203 0.89287 0.94726 1.20349 0.97854 0.87054 0.97158 1.20571 0.92485 1.47074 0.92634 0.88140 1.24906 0.97937 0.94148 0.94859 1.69869 1.12742 1.48566 1.21297 0.86984 0.80055 0.78140 0.84652 1.21288 1.22568 1.18171 1.22771 0.90623 1.07532 1.00943 1.22890 0.99753 1.03443 0.98212 0.93238 0.92325 0.92431 0.85478 0.83623 0.91117 0.91002 0.87016 0.86495 0.87361 0.87526 0.87654 0.80420 0.91827 0.93493 0.92963 0.91763 0.90175 0.89961 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.29 37.16 0.35 -1.38 16 2 C 0.10 1.35 3.16 -67.72 -0.21 1.14 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 4 N -0.84 -11.90 8.39 -4.67 -0.04 -11.94 16 5 C 0.06 0.96 1.75 -67.71 -0.12 0.84 16 6 H 0.05 0.83 7.38 -51.93 -0.38 0.44 16 7 C -0.08 -1.19 4.82 -27.89 -0.13 -1.33 16 8 C -0.08 -1.37 4.25 -104.63 -0.44 -1.82 16 9 C -0.09 -1.74 6.94 -39.58 -0.27 -2.02 16 10 C -0.07 -1.35 8.93 -39.58 -0.35 -1.70 16 11 C -0.12 -2.19 9.63 -39.58 -0.38 -2.58 16 12 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 13 C -0.12 -2.07 9.73 -39.58 -0.39 -2.45 16 14 N -0.68 -12.52 6.23 -106.73 -0.66 -13.19 16 15 C 0.08 1.50 4.71 -3.82 -0.02 1.49 16 16 C -0.02 -0.47 0.97 -155.66 -0.15 -0.62 16 17 C -0.49 -12.07 7.41 -34.44 -0.26 -12.32 16 18 H 0.10 2.58 4.55 -52.49 -0.24 2.34 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 20 N -0.89 -24.27 13.96 55.43 0.77 -23.50 16 21 Si 0.87 21.05 25.15 -169.99 -4.28 16.78 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.26 -5.94 5.26 56.52 0.30 -5.65 16 25 C -0.18 -3.63 9.58 -26.73 -0.26 -3.89 16 26 C -0.20 -4.31 7.55 -26.73 -0.20 -4.51 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.63 6.47 -51.93 -0.34 0.30 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.33 4.68 7.45 -39.29 -0.29 4.39 16 31 H 0.35 5.21 7.32 -39.29 -0.29 4.92 16 32 H 0.07 0.92 6.32 -51.93 -0.33 0.59 16 33 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 34 H 0.11 2.05 7.91 -52.49 -0.42 1.63 16 35 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 39 H 0.37 7.65 4.16 -39.29 -0.16 7.48 16 40 H 0.06 1.33 6.36 -51.93 -0.33 1.00 16 41 H 0.05 0.81 4.56 -51.93 -0.24 0.58 16 42 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 43 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 44 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 45 H 0.08 1.86 7.25 -51.93 -0.38 1.48 16 46 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -25.83 344.51 -9.62 -35.45 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: -7.27 Total: 22.73 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: -3.34 Total: -31.52 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.07 Total: -48.63 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.28 Total: 16.78 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -25.83 -9.62 -35.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423106310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.176 kcal (2) G-P(sol) polarization free energy of solvation -25.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds