Wall clock time and date at job start Tue Mar 31 2020 07:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46768 * 2 1 4 4 N 1.46894 * 109.47669 * 119.99729 * 2 1 3 5 5 C 1.53002 * 109.47374 * 240.00413 * 2 1 3 6 6 H 1.09003 * 109.46422 * 305.48670 * 5 2 1 7 7 C 1.52995 * 109.47135 * 65.48129 * 5 2 1 8 8 C 1.50698 * 109.46874 * 185.60391 * 7 5 2 9 9 C 1.38231 * 120.00476 * 263.07153 * 8 7 5 10 10 C 1.38242 * 120.00127 * 179.76668 * 9 8 7 11 11 C 1.38237 * 119.99942 * 0.51108 * 10 9 8 12 12 C 1.38235 * 119.99826 * 359.74447 * 11 10 9 13 13 C 1.38237 * 119.99732 * 83.34928 * 8 7 5 14 14 N 1.46897 * 109.47298 * 185.48811 * 5 2 1 15 15 C 1.46904 * 111.00131 * 86.93841 * 14 5 2 16 16 C 1.52998 * 109.47156 * 86.46636 * 15 14 5 17 17 C 1.50694 * 115.54881 * 39.62566 * 16 15 14 18 18 H 1.08002 * 120.00337 * 265.93316 * 17 16 15 19 19 C 1.37880 * 120.00291 * 85.93770 * 17 16 15 20 20 N 1.31511 * 120.00486 * 180.72534 * 19 17 16 21 21 Si 1.86798 * 119.99604 * 0.72433 * 19 17 16 22 22 H 1.48502 * 109.47202 * 92.32740 * 21 19 17 23 23 H 1.48503 * 109.46995 * 212.32716 * 21 19 17 24 24 H 1.48499 * 109.47308 * 332.32884 * 21 19 17 25 25 C 1.53002 * 117.49985 * 253.91733 * 16 15 14 26 26 C 1.53000 * 60.00119 * 252.51376 * 25 16 15 27 27 H 1.09004 * 109.46768 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47406 * 60.00164 * 1 2 3 29 29 H 1.09003 * 109.47022 * 299.99732 * 1 2 3 30 30 H 1.00903 * 110.99923 * 65.21634 * 4 2 1 31 31 H 1.00897 * 111.00496 * 189.17511 * 4 2 1 32 32 H 1.08994 * 109.47469 * 305.61007 * 7 5 2 33 33 H 1.09005 * 109.46785 * 65.61321 * 7 5 2 34 34 H 1.08001 * 119.99984 * 0.02562 * 9 8 7 35 35 H 1.08001 * 119.99746 * 180.23447 * 10 9 8 36 36 H 1.07993 * 119.99667 * 179.72717 * 11 10 9 37 37 H 1.08003 * 119.99993 * 179.97438 * 12 11 10 38 38 H 1.08003 * 119.99988 * 359.97438 * 13 8 7 39 39 H 1.00900 * 110.99874 * 210.89290 * 14 5 2 40 40 H 1.08995 * 109.46976 * 206.47059 * 15 14 5 41 41 H 1.09003 * 109.46657 * 326.46454 * 15 14 5 42 42 H 0.96991 * 120.00143 * 179.97438 * 20 19 17 43 43 H 1.09001 * 117.49510 * 0.02562 * 25 16 15 44 44 H 1.08995 * 117.49845 * 145.02090 * 25 16 15 45 45 H 1.09001 * 117.49392 * 252.51472 * 26 25 16 46 46 H 1.08997 * 117.52388 * 107.47893 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6924 1.1994 5 6 2.0400 -0.7212 -1.2493 6 1 1.5987 -1.7165 -1.2998 7 6 1.6457 0.0753 -2.4946 8 6 2.0261 -0.7013 -3.7288 9 6 3.2143 -0.4265 -4.3796 10 6 3.5654 -1.1422 -5.5090 11 6 2.7234 -2.1256 -5.9936 12 6 1.5327 -2.3968 -5.3459 13 6 1.1840 -1.6847 -4.2135 14 7 3.5030 -0.8369 -1.1849 15 6 3.9038 -2.0463 -0.4535 16 6 3.9525 -3.2329 -1.4181 17 6 4.5145 -2.9370 -2.7846 18 1 3.8511 -2.6810 -3.5975 19 6 5.8756 -2.9932 -2.9974 20 7 6.3672 -2.7210 -4.1864 21 14 7.0215 -3.4559 -1.5965 22 1 7.2587 -4.9217 -1.6146 23 1 8.3142 -2.7431 -1.7585 24 1 6.4025 -3.0706 -0.3028 25 6 2.8277 -4.2659 -1.3247 26 6 4.2306 -4.6152 -0.8239 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 1.7680 -1.6693 1.1811 31 1 3.0170 -0.5778 1.3013 32 1 0.5693 0.2468 -2.4906 33 1 2.1663 1.0330 -2.4933 34 1 3.8702 0.3446 -4.0033 35 1 4.4955 -0.9300 -6.0152 36 1 2.9957 -2.6817 -6.8784 37 1 0.8746 -3.1648 -5.7247 38 1 0.2538 -1.8966 -3.7074 39 1 3.9079 -0.8224 -2.1090 40 1 4.8894 -1.8949 -0.0135 41 1 3.1806 -2.2495 0.3364 42 1 7.3247 -2.7602 -4.3359 43 1 2.0527 -4.0998 -0.5765 44 1 2.4938 -4.7315 -2.2520 45 1 4.8196 -5.3107 -1.4218 46 1 4.3792 -4.6791 0.2540 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000423106310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:25 Heat of formation + Delta-G solvation = 34.535464 kcal Electronic energy + Delta-G solvation = -24924.637624 eV Core-core repulsion = 21813.842468 eV Total energy + Delta-G solvation = -3110.795155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.63642 -39.20001 -37.83723 -34.29300 -34.03009 -33.17365 -31.52299 -30.39359 -28.51852 -27.40314 -25.89782 -23.99836 -23.30184 -23.17480 -21.82683 -20.85704 -20.73860 -18.05413 -17.57328 -16.93357 -16.75406 -16.40809 -16.11500 -15.97258 -15.34913 -15.19299 -14.99515 -14.76156 -14.53213 -14.14600 -14.04421 -13.53959 -13.48798 -13.20435 -13.00123 -12.96114 -12.57221 -12.33787 -12.29296 -12.23545 -12.06091 -11.76525 -11.68111 -11.64009 -11.60128 -11.36996 -10.83694 -10.55528 -10.10668 -9.58442 -9.47555 -9.24011 -8.82705 -8.08112 -6.09376 0.72619 0.80219 1.35078 1.43189 1.50582 2.47747 3.13216 3.19731 3.27714 3.62893 3.85282 3.96835 4.16376 4.17718 4.34591 4.37313 4.38332 4.42334 4.44494 4.51742 4.53314 4.65513 4.72213 4.78856 4.85361 4.86699 4.88295 4.98967 5.06139 5.12890 5.15529 5.26353 5.35224 5.38718 5.43077 5.45737 5.49962 5.51633 5.79309 5.85412 5.90074 5.96840 6.37545 6.38262 6.42700 6.62816 6.70675 6.83299 7.07784 7.57696 9.01849 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.012031 B = 0.009448 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2326.838503 B = 2962.821064 C = 4344.852090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.102 3.898 3 H 0.074 0.926 4 N -0.841 5.841 5 C 0.068 3.932 6 H 0.036 0.964 7 C -0.077 4.077 8 C -0.079 4.079 9 C -0.106 4.106 10 C -0.089 4.089 11 C -0.137 4.137 12 C -0.125 4.125 13 C -0.126 4.126 14 N -0.686 5.686 15 C 0.087 3.913 16 C -0.040 4.040 17 C -0.472 4.472 18 H 0.088 0.912 19 C 0.040 3.960 20 N -0.922 5.922 21 Si 0.910 3.090 22 H -0.295 1.295 23 H -0.312 1.312 24 H -0.238 1.238 25 C -0.162 4.162 26 C -0.209 4.209 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.334 0.666 31 H 0.344 0.656 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.356 0.644 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.254 0.746 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.823 4.240 4.377 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.010 4.010 3 H 0.093 0.907 4 N -0.371 5.371 5 C -0.044 4.044 6 H 0.054 0.946 7 C -0.115 4.115 8 C -0.079 4.079 9 C -0.124 4.124 10 C -0.107 4.107 11 C -0.155 4.155 12 C -0.143 4.143 13 C -0.144 4.144 14 N -0.320 5.320 15 C -0.044 4.044 16 C -0.043 4.043 17 C -0.510 4.510 18 H 0.106 0.894 19 C -0.159 4.159 20 N -0.561 5.561 21 Si 0.739 3.261 22 H -0.222 1.222 23 H -0.240 1.240 24 H -0.161 1.161 25 C -0.199 4.199 26 C -0.247 4.247 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.180 0.820 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.112 0.888 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.077 5.201 5.243 14.156 hybrid contribution 2.104 -2.106 -1.268 3.236 sum -9.973 3.095 3.975 11.173 Atomic orbital electron populations 1.21818 0.93572 1.01938 1.02383 1.21429 0.95263 0.97689 0.86655 0.90728 1.59152 1.20445 1.17630 1.39921 1.22257 0.89024 0.97734 0.95370 0.94606 1.20830 1.02590 0.97818 0.90277 1.19858 0.94301 0.97254 0.96456 1.20825 0.96049 1.00152 0.95421 1.20890 0.97407 0.95761 0.96674 1.21096 0.95337 0.98140 1.00927 1.21191 0.96860 0.99804 0.96425 1.21031 1.00194 0.96482 0.96663 1.61019 1.08401 1.37072 1.25504 1.21958 0.99231 0.88447 0.94763 1.20395 0.99349 0.88256 0.96259 1.20776 0.91878 1.44386 0.93949 0.89443 1.25408 0.99355 0.95217 0.95922 1.69988 1.12311 1.51135 1.22696 0.86389 0.78522 0.77013 0.84158 1.22203 1.24039 1.16097 1.22748 0.90672 1.05450 1.01024 1.22891 1.00373 1.02259 0.99157 0.93088 0.90946 0.91893 0.85248 0.84166 0.88344 0.90820 0.87824 0.88399 0.86894 0.85151 0.85091 0.82015 0.93494 0.90927 0.93704 0.88782 0.91447 0.92065 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.29 71.98 0.67 -2.07 16 2 C 0.10 2.48 3.16 44.92 0.14 2.62 16 3 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 4 N -0.84 -20.88 8.39 -168.68 -1.42 -22.29 16 5 C 0.07 1.94 1.75 44.92 0.08 2.02 16 6 H 0.04 1.13 7.38 -2.39 -0.02 1.11 16 7 C -0.08 -2.08 4.82 29.85 0.14 -1.94 16 8 C -0.08 -2.56 4.25 -19.87 -0.08 -2.65 16 9 C -0.11 -4.00 6.94 22.27 0.15 -3.84 16 10 C -0.09 -3.58 8.93 22.27 0.20 -3.38 16 11 C -0.14 -5.09 9.63 22.27 0.21 -4.87 16 12 C -0.12 -4.11 10.05 22.27 0.22 -3.89 16 13 C -0.13 -3.94 9.73 22.27 0.22 -3.73 16 14 N -0.69 -23.97 6.23 -491.57 -3.06 -27.04 16 15 C 0.09 3.15 4.71 86.30 0.41 3.55 16 16 C -0.04 -1.66 0.97 -52.93 -0.05 -1.71 16 17 C -0.47 -23.16 7.41 25.60 0.19 -22.98 16 18 H 0.09 4.52 4.55 -2.91 -0.01 4.50 16 19 C 0.04 2.11 5.47 84.66 0.46 2.58 16 20 N -0.92 -52.20 13.96 21.45 0.30 -51.90 16 21 Si 0.91 43.59 25.15 68.60 1.73 45.32 16 22 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 23 H -0.31 -15.54 7.11 99.48 0.71 -14.84 16 24 H -0.24 -10.51 5.26 99.48 0.52 -9.99 16 25 C -0.16 -5.99 9.58 30.59 0.29 -5.70 16 26 C -0.21 -8.29 7.55 30.60 0.23 -8.06 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.23 6.47 -2.39 -0.02 1.21 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.33 8.08 7.45 -89.69 -0.67 7.41 16 31 H 0.34 9.25 7.32 -89.70 -0.66 8.59 16 32 H 0.10 2.13 6.32 -2.39 -0.02 2.12 16 33 H 0.07 1.98 8.04 -2.38 -0.02 1.97 16 34 H 0.10 3.95 7.91 -2.91 -0.02 3.93 16 35 H 0.10 4.17 8.06 -2.91 -0.02 4.15 16 36 H 0.11 3.94 8.06 -2.91 -0.02 3.91 16 37 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 38 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 39 H 0.36 14.49 4.16 -89.69 -0.37 14.12 16 40 H 0.05 1.86 6.36 -2.39 -0.02 1.85 16 41 H 0.07 2.25 4.56 -2.39 -0.01 2.24 16 42 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 43 H 0.09 2.94 8.08 -2.39 -0.02 2.92 16 44 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.06 2.69 7.25 -2.39 -0.02 2.68 16 46 H 0.09 3.15 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -55.75 344.51 0.15 -55.60 By element: Atomic # 1 Polarization: 55.24 SS G_CDS: -0.89 Total: 54.35 kcal Atomic # 6 Polarization: -57.53 SS G_CDS: 3.49 Total: -54.04 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -4.18 Total: -101.23 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.73 Total: 45.32 kcal Total: -55.75 0.15 -55.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423106310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.135 kcal (2) G-P(sol) polarization free energy of solvation -55.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds