Wall clock time and date at job start Tue Mar 31 2020 06:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.46317 * 2 1 4 4 C 1.53037 * 109.46463 * 240.01911 * 2 1 3 5 5 C 1.53117 * 109.27984 * 180.81886 * 4 2 1 6 6 N 1.46503 * 109.52493 * 177.55806 * 5 4 2 7 7 C 1.36939 * 119.99899 * 154.99772 * 6 5 4 8 8 H 1.07995 * 119.99953 * 0.02562 * 7 6 5 9 9 C 1.38808 * 119.99591 * 180.02562 * 7 6 5 10 10 N 1.31613 * 120.00248 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99576 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46889 * 179.97438 * 11 9 7 13 13 H 1.48497 * 109.47241 * 59.99660 * 11 9 7 14 14 H 1.48497 * 109.47157 * 299.99521 * 11 9 7 15 15 C 1.53121 * 109.16516 * 57.64980 * 5 4 2 16 16 C 1.53039 * 109.27811 * 302.35342 * 15 5 4 17 17 H 1.08999 * 109.46093 * 179.19079 * 16 15 5 18 18 C 1.52997 * 109.45078 * 299.16086 * 16 15 5 19 19 N 1.46846 * 109.52451 * 59.17238 * 16 15 5 20 20 C 1.46908 * 110.99866 * 174.16036 * 19 16 15 21 21 C 1.50703 * 109.47003 * 290.42267 * 20 19 16 22 22 C 1.38241 * 119.99499 * 269.72490 * 21 20 19 23 23 C 1.38233 * 119.99746 * 179.78831 * 22 21 20 24 24 C 1.38240 * 119.99970 * 0.46758 * 23 22 21 25 25 C 1.38233 * 119.99842 * 359.76037 * 24 23 22 26 26 C 1.38227 * 120.00542 * 89.99946 * 21 20 19 27 27 H 1.08998 * 109.46896 * 187.23263 * 1 2 3 28 28 H 1.08992 * 109.47442 * 307.23549 * 1 2 3 29 29 H 1.09001 * 109.46498 * 67.23882 * 1 2 3 30 30 H 1.08994 * 109.50264 * 60.87300 * 4 2 1 31 31 H 1.09005 * 109.53644 * 300.77737 * 4 2 1 32 32 H 1.09006 * 109.52380 * 297.68391 * 5 4 2 33 33 H 0.96996 * 120.00199 * 335.00200 * 6 5 4 34 34 H 0.96994 * 120.00315 * 0.02562 * 10 9 7 35 35 H 1.09005 * 109.49665 * 62.28821 * 15 5 4 36 36 H 1.08993 * 109.50935 * 182.40307 * 15 5 4 37 37 H 1.08996 * 109.47312 * 180.02562 * 18 16 15 38 38 H 1.09000 * 109.47216 * 300.04949 * 18 16 15 39 39 H 1.09005 * 109.46995 * 60.04952 * 18 16 15 40 40 H 1.09004 * 109.46631 * 50.41518 * 20 19 16 41 41 H 1.08992 * 109.47160 * 170.41731 * 20 19 16 42 42 H 1.08004 * 119.99788 * 359.97438 * 22 21 20 43 43 H 1.08005 * 119.99728 * 180.24755 * 23 22 21 44 44 H 1.07997 * 119.99578 * 179.78758 * 24 23 22 45 45 H 1.08002 * 119.99918 * 180.02562 * 25 24 23 46 46 H 1.08004 * 119.99549 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2498 5 6 3.5710 -0.7365 -1.2353 6 7 4.0643 -1.4762 -2.3996 7 6 5.3136 -1.2167 -2.8967 8 1 5.9353 -0.4669 -2.4302 9 6 5.7807 -1.9172 -4.0003 10 7 5.0232 -2.8312 -4.5685 11 14 7.4852 -1.5636 -4.6780 12 1 7.7436 -2.4393 -5.8492 13 1 8.5006 -1.8301 -3.6277 14 1 7.5666 -0.1409 -5.0955 15 6 4.0547 -1.4192 0.0472 16 6 3.4862 -0.6779 1.2594 17 1 3.8170 -1.1701 2.1739 18 6 3.9832 0.7691 1.2508 19 7 2.0191 -0.6917 1.1995 20 6 1.4370 -0.1104 2.4166 21 6 1.6812 -1.0350 3.5813 22 6 0.7566 -2.0147 3.8917 23 6 0.9827 -2.8656 4.9574 24 6 2.1287 -2.7306 5.7186 25 6 3.0509 -1.7479 5.4111 26 6 2.8269 -0.8998 4.3428 27 1 -0.3633 -1.0195 0.1294 28 1 -0.3634 0.6218 0.8181 29 1 -0.3632 0.3976 -0.9477 30 1 1.6897 -0.1984 -2.1398 31 1 1.6658 -1.7448 -1.2582 32 1 3.9460 0.2865 -1.2681 33 1 3.5060 -2.1498 -2.8185 34 1 4.1383 -3.0151 -4.2164 35 1 3.7121 -2.4539 0.0599 36 1 5.1437 -1.3953 0.0838 37 1 3.5789 1.2972 2.1143 38 1 5.0722 0.7795 1.2953 39 1 3.6521 1.2615 0.3364 40 1 1.9014 0.8554 2.6158 41 1 0.3643 0.0239 2.2779 42 1 -0.1409 -2.1172 3.2997 43 1 0.2623 -3.6336 5.1974 44 1 2.3036 -3.3933 6.5533 45 1 3.9465 -1.6427 6.0056 46 1 3.5473 -0.1317 4.1027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168011523.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:56 Heat of formation + Delta-G solvation = 20.027658 kcal Electronic energy + Delta-G solvation = -23639.813667 eV Core-core repulsion = 20528.389406 eV Total energy + Delta-G solvation = -3111.424261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 288.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.29413 -39.70324 -37.05953 -34.60643 -34.25052 -32.61011 -31.70361 -30.44540 -28.88678 -27.56032 -26.60774 -25.37404 -23.63292 -23.16305 -22.24408 -21.59622 -19.75529 -19.19617 -17.58719 -17.35147 -16.81028 -16.39157 -16.30366 -15.89476 -15.68647 -15.45564 -14.99543 -14.72494 -14.42270 -14.27158 -13.99007 -13.56002 -13.43603 -13.33606 -13.07899 -12.98112 -12.74556 -12.67580 -12.58333 -12.52811 -11.99469 -11.94115 -11.85570 -11.79666 -11.63175 -11.48644 -11.44165 -10.99007 -10.79854 -9.75052 -9.63236 -9.12971 -9.09301 -8.38824 -5.31786 0.48029 0.56350 1.56370 1.66761 1.83091 2.70746 2.74342 3.19363 3.40213 3.61175 3.81200 3.83463 3.99654 4.02739 4.11915 4.17646 4.21505 4.28806 4.31688 4.42876 4.48493 4.50031 4.53300 4.59529 4.65273 4.69493 4.79959 4.83317 4.93886 4.94294 5.01223 5.09186 5.13410 5.17648 5.21927 5.24724 5.32007 5.39143 5.52152 5.60055 5.62072 5.67377 5.76929 6.15699 6.21222 6.25920 6.49642 7.10802 8.01058 8.13774 9.13248 Molecular weight = 288.19amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.003901 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.813814 B = 7176.119801 C = 7681.144304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.089 3.911 3 H 0.048 0.952 4 C -0.106 4.106 5 C 0.179 3.821 6 N -0.751 5.751 7 C -0.327 4.327 8 H 0.063 0.937 9 C -0.106 4.106 10 N -0.977 5.977 11 Si 1.126 2.874 12 H -0.292 1.292 13 H -0.279 1.279 14 H -0.277 1.277 15 C -0.113 4.113 16 C 0.092 3.908 17 H 0.083 0.917 18 C -0.182 4.182 19 N -0.526 5.526 20 C 0.085 3.915 21 C -0.083 4.083 22 C -0.113 4.113 23 C -0.131 4.131 24 C -0.131 4.131 25 C -0.132 4.132 26 C -0.127 4.127 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.357 0.643 34 H 0.243 0.757 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.100 0.900 42 H 0.128 0.872 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.918 6.700 21.468 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 H 0.065 0.935 4 C -0.145 4.145 5 C 0.071 3.929 6 N -0.392 5.392 7 C -0.458 4.458 8 H 0.081 0.919 9 C -0.296 4.296 10 N -0.625 5.625 11 Si 0.951 3.049 12 H -0.218 1.218 13 H -0.205 1.205 14 H -0.203 1.203 15 C -0.153 4.153 16 C -0.017 4.017 17 H 0.101 0.899 18 C -0.240 4.240 19 N -0.250 5.250 20 C -0.041 4.041 21 C -0.083 4.083 22 C -0.132 4.132 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.149 4.149 26 C -0.146 4.146 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.189 0.811 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.118 0.882 42 H 0.146 0.854 43 H 0.155 0.845 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.839 6.001 20.344 22.979 hybrid contribution -0.754 0.613 0.736 1.219 sum -9.594 6.614 21.081 24.087 Atomic orbital electron populations 1.21894 0.92569 1.02730 1.02639 1.21536 0.96350 0.95299 0.88782 0.93452 1.21791 0.94644 1.00696 0.97367 1.20420 0.92973 0.93650 0.85808 1.42683 1.16527 1.45874 1.34093 1.20349 0.93950 1.19338 1.12191 0.91880 1.27171 1.09027 0.96850 0.96599 1.70979 1.11006 1.36137 1.44370 0.82652 0.70734 0.75912 0.75603 1.21844 1.20539 1.20291 1.22041 0.98714 0.98994 0.95575 1.21548 0.87360 0.95023 0.97765 0.89933 1.22429 1.01896 0.97594 1.02099 1.62129 1.06294 1.55049 1.01541 1.21233 1.01364 0.94483 0.87024 1.19874 0.95032 0.97446 0.95983 1.21222 0.99730 0.94927 0.97303 1.21433 0.98247 0.99515 0.95654 1.21438 0.94447 0.98599 1.00443 1.21390 1.00034 0.95842 0.97676 1.21250 0.97082 1.00250 0.95971 0.92063 0.90643 0.91595 0.92235 0.92739 0.94379 0.81132 0.94684 0.94266 0.94123 0.90809 0.92340 0.92759 0.93018 0.88168 0.85419 0.84497 0.84393 0.84707 0.85958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.56 71.98 0.62 -2.26 16 2 C 0.09 2.33 2.15 44.94 0.10 2.43 16 3 H 0.05 1.23 6.19 -2.39 -0.01 1.22 16 4 C -0.11 -3.67 4.84 30.65 0.15 -3.52 16 5 C 0.18 7.48 2.53 45.07 0.11 7.59 16 6 N -0.75 -39.60 5.12 -322.55 -1.65 -41.25 16 7 C -0.33 -18.96 9.93 84.03 0.83 -18.13 16 8 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 9 C -0.11 -6.30 5.50 84.86 0.47 -5.83 16 10 N -0.98 -62.89 13.70 21.65 0.30 -62.59 16 11 Si 1.13 53.24 29.92 68.60 2.05 55.29 16 12 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 15 C -0.11 -4.35 5.20 30.65 0.16 -4.19 16 16 C 0.09 2.68 2.72 44.94 0.12 2.80 16 17 H 0.08 2.37 5.83 -2.39 -0.01 2.36 16 18 C -0.18 -4.69 8.20 71.98 0.59 -4.10 16 19 N -0.53 -13.71 4.40 -850.52 -3.74 -17.45 16 20 C 0.09 1.76 4.77 85.56 0.41 2.17 16 21 C -0.08 -1.78 4.99 -19.87 -0.10 -1.88 16 22 C -0.11 -2.32 9.70 22.27 0.22 -2.10 16 23 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 24 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 25 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 26 C -0.13 -2.63 8.01 22.27 0.18 -2.45 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.21 6.47 -2.39 -0.02 1.19 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.04 1.64 6.50 -2.38 -0.02 1.63 16 33 H 0.36 19.82 6.63 -92.71 -0.61 19.21 16 34 H 0.24 15.66 6.77 -92.71 -0.63 15.03 16 35 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 1.54 6.36 -2.39 -0.02 1.52 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 1.52 4.80 -2.38 -0.01 1.51 16 40 H 0.05 0.99 6.03 -2.38 -0.01 0.98 16 41 H 0.10 1.77 5.58 -2.39 -0.01 1.75 16 42 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 43 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 44 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 45 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 46 H 0.12 2.33 7.88 -2.91 -0.02 2.31 16 Total: -1.00 -68.74 347.80 1.96 -66.78 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: 0.49 Total: 35.26 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 4.52 Total: -36.04 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -5.10 Total: -121.29 kcal Atomic # 14 Polarization: 53.24 SS G_CDS: 2.05 Total: 55.29 kcal Total: -68.74 1.96 -66.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168011523.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.804 kcal (2) G-P(sol) polarization free energy of solvation -68.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds