Wall clock time and date at job start Tue Mar 31 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99996 * 2 1 4 4 H 1.48502 * 109.46895 * 269.99717 * 3 2 1 5 5 H 1.48495 * 109.47184 * 29.99593 * 3 2 1 6 6 H 1.48501 * 109.46883 * 150.00126 * 3 2 1 7 7 C 1.38812 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99805 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99820 * 0.02562 * 7 2 1 10 10 S 1.65599 * 119.99793 * 179.97438 * 9 7 2 11 11 O 1.42105 * 104.27797 * 181.07441 * 10 9 7 12 12 O 1.42101 * 104.27901 * 308.93149 * 10 9 7 13 13 C 1.81397 * 104.44825 * 65.00329 * 10 9 7 14 14 C 1.53009 * 109.47235 * 179.97438 * 13 10 9 15 15 C 1.50697 * 109.46948 * 179.97438 * 14 13 10 16 16 C 1.38261 * 119.99504 * 269.72552 * 15 14 13 17 17 C 1.38223 * 120.02806 * 179.77114 * 16 15 14 18 18 C 1.38241 * 120.01045 * 0.50976 * 17 16 15 19 19 C 1.38329 * 119.98471 * 359.73982 * 18 17 16 20 20 Cl 1.73604 * 120.01031 * 180.02562 * 19 18 17 21 21 C 1.38190 * 119.99261 * 90.00324 * 15 14 13 22 22 H 0.97004 * 119.99579 * 0.02562 * 1 2 3 23 23 H 0.96999 * 120.00161 * 0.02562 * 9 7 2 24 24 H 1.09004 * 109.47032 * 299.99803 * 13 10 9 25 25 H 1.09000 * 109.47124 * 60.00075 * 13 10 9 26 26 H 1.08995 * 109.47216 * 300.00010 * 14 13 10 27 27 H 1.09000 * 109.46805 * 60.00123 * 14 13 10 28 28 H 1.08000 * 119.98934 * 359.97438 * 16 15 14 29 29 H 1.07997 * 119.99274 * 180.25244 * 17 16 15 30 30 H 1.07998 * 120.00742 * 179.77154 * 18 17 16 31 31 H 1.07998 * 120.00773 * 359.95527 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 16 2.1535 -3.8222 0.0005 11 8 1.1362 -4.8141 -0.0253 12 8 3.0781 -3.6930 -1.0707 13 6 3.0226 -3.8430 1.5926 14 6 3.8332 -5.1350 1.7143 15 6 4.5557 -5.1519 3.0367 16 6 5.8293 -4.6228 3.1353 17 6 6.4908 -4.6337 4.3490 18 6 5.8833 -5.1833 5.4626 19 6 4.6112 -5.7174 5.3633 20 17 3.8475 -6.4071 6.7615 21 6 3.9475 -5.7015 4.1492 22 1 -0.4850 0.8401 -0.0004 23 1 0.3555 -2.3880 -0.0002 24 1 3.6934 -2.9858 1.6516 25 1 2.2963 -3.7925 2.4038 26 1 3.1622 -5.9918 1.6555 27 1 4.5595 -5.1859 0.9032 28 1 6.3062 -4.1978 2.2645 29 1 7.4839 -4.2166 4.4263 30 1 6.4017 -5.1951 6.4099 31 1 2.9542 -6.1182 4.0712 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285134708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:17 Heat of formation + Delta-G solvation = -68.059481 kcal Electronic energy + Delta-G solvation = -18042.119620 eV Core-core repulsion = 14861.977690 eV Total energy + Delta-G solvation = -3180.141930 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 289.033 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.52790 -36.65326 -35.94911 -34.84908 -34.65467 -34.09619 -31.02364 -30.86028 -29.49915 -24.58692 -24.21742 -22.78973 -21.16340 -18.31833 -18.07749 -17.24331 -16.50866 -15.84854 -15.66248 -15.26073 -14.84856 -14.48115 -13.99899 -13.75564 -13.64170 -13.30200 -13.17971 -12.41178 -12.00946 -11.75523 -11.63398 -11.43745 -11.33449 -11.14339 -11.05647 -11.00169 -10.92060 -10.89192 -10.60955 -10.31669 -10.04931 -9.73398 -8.99101 -8.75249 -8.30703 -6.54706 -3.94619 1.03641 1.12932 1.38938 1.99419 3.14414 3.19243 3.20274 3.49475 3.91788 4.28235 4.59649 4.67601 4.77693 4.93250 5.01459 5.05870 5.17697 5.25668 5.34681 5.39208 5.58609 5.69558 5.86929 6.03996 6.09318 6.20646 6.35863 6.47044 6.68806 6.94728 7.41359 8.60259 8.73129 9.16696 10.60774 Molecular weight = 289.03amu Principal moments of inertia in cm(-1) A = 0.017728 B = 0.004227 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.013512 B = 6622.909231 C = 7112.130959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.029 3.971 3 Si 0.925 3.075 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.274 4.274 8 H 0.104 0.896 9 N -0.949 5.949 10 S 2.544 3.456 11 O -1.003 7.003 12 O -0.971 6.971 13 C -0.650 4.650 14 C -0.070 4.070 15 C -0.051 4.051 16 C -0.113 4.113 17 C -0.105 4.105 18 C -0.121 4.121 19 C -0.031 4.031 20 Cl -0.076 7.076 21 C -0.110 4.110 22 H 0.276 0.724 23 H 0.410 0.590 24 H 0.122 0.878 25 H 0.117 0.883 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.966 -7.371 10.246 16.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.179 4.179 3 Si 0.751 3.249 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.414 4.414 8 H 0.122 0.878 9 N -0.700 5.700 10 S 2.636 3.364 11 O -0.992 6.992 12 O -0.961 6.961 13 C -0.771 4.771 14 C -0.109 4.109 15 C -0.052 4.052 16 C -0.131 4.131 17 C -0.123 4.123 18 C -0.140 4.140 19 C -0.058 4.058 20 Cl -0.048 7.048 21 C -0.129 4.129 22 H 0.086 0.914 23 H 0.246 0.754 24 H 0.140 0.860 25 H 0.135 0.865 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.989 -8.129 9.739 16.146 hybrid contribution 0.017 1.211 1.021 1.584 sum 10.006 -6.918 10.761 16.241 Atomic orbital electron populations 1.69699 1.06077 1.28480 1.47152 1.25293 0.95677 0.99670 0.97225 0.85953 0.79199 0.80975 0.78773 1.20002 1.20670 1.19266 1.19370 0.92232 0.83274 1.46559 0.87799 1.51769 1.17187 1.19567 1.81440 1.09235 0.74370 0.73759 0.79041 1.93417 1.56623 1.60773 1.88352 1.93476 1.65838 1.86261 1.50566 1.31095 1.13044 1.03204 1.29788 1.20309 0.98852 0.97021 0.94677 1.19825 0.94107 0.96190 0.95122 1.21251 0.94500 0.99043 0.98318 1.21100 1.00132 0.98963 0.92126 1.21008 0.93679 0.99602 0.99716 1.20898 0.94679 1.01672 0.88547 1.98364 1.81635 1.83426 1.41330 1.21010 1.00532 1.00630 0.90697 0.91440 0.75444 0.85979 0.86464 0.89855 0.89652 0.85039 0.85076 0.85193 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.80 13.06 55.49 0.72 -22.07 16 2 C 0.03 0.73 5.50 -17.43 -0.10 0.64 16 3 Si 0.92 19.13 29.55 -169.99 -5.02 14.11 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 7 C -0.27 -6.72 9.49 -15.06 -0.14 -6.87 16 8 H 0.10 2.38 7.82 -52.49 -0.41 1.97 16 9 N -0.95 -22.38 5.65 31.50 0.18 -22.20 16 10 S 2.54 53.11 5.42 -107.50 -0.58 52.53 16 11 O -1.00 -23.00 18.08 -57.54 -1.04 -24.04 16 12 O -0.97 -22.88 17.76 -57.54 -1.02 -23.90 16 13 C -0.65 -10.79 5.99 37.16 0.22 -10.57 16 14 C -0.07 -1.01 5.35 -27.88 -0.15 -1.16 16 15 C -0.05 -0.68 5.13 -104.63 -0.54 -1.22 16 16 C -0.11 -1.34 9.70 -39.58 -0.38 -1.72 16 17 C -0.10 -1.09 10.05 -39.59 -0.40 -1.48 16 18 C -0.12 -1.30 9.83 -39.55 -0.39 -1.69 16 19 C -0.03 -0.38 6.32 -39.50 -0.25 -0.63 16 20 Cl -0.08 -0.86 28.96 -51.86 -1.50 -2.36 16 21 C -0.11 -1.42 9.49 -39.55 -0.38 -1.80 16 22 H 0.28 6.75 8.31 -40.82 -0.34 6.42 16 23 H 0.41 9.99 7.98 -34.47 -0.28 9.72 16 24 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 25 H 0.12 1.87 8.14 -51.92 -0.42 1.44 16 26 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 27 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 28 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -30.12 305.45 -9.36 -39.48 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -3.20 Total: 10.36 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -2.50 Total: -26.50 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.90 Total: -44.27 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -2.06 Total: -47.95 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Atomic # 16 Polarization: 53.11 SS G_CDS: -0.58 Total: 52.53 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.12 -9.36 -39.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285134708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.581 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds