Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86800 * 120.00305 * 2 1 4 4 H 1.48499 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46818 * 299.99836 * 3 2 1 6 6 H 1.48502 * 109.47298 * 59.99468 * 3 2 1 7 7 C 1.40046 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00000 * 180.02562 * 7 2 1 9 9 C 1.46382 * 119.99948 * 0.02562 * 7 2 1 10 10 O 1.21687 * 119.99767 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00020 * 180.02562 * 9 7 2 12 12 C 1.46498 * 119.99950 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.46944 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.47196 * 304.99625 * 13 12 11 15 15 O 1.42899 * 109.47623 * 64.99532 * 13 12 11 16 16 C 1.50704 * 109.46932 * 184.99740 * 13 12 11 17 17 C 1.38226 * 119.95281 * 100.00042 * 16 13 12 18 18 C 1.38430 * 120.04300 * 180.02562 * 17 16 13 19 19 F 1.35099 * 120.02334 * 180.02562 * 18 17 16 20 20 C 1.38605 * 119.95469 * 359.97438 * 18 17 16 21 21 F 1.35095 * 120.04349 * 179.72874 * 20 18 17 22 22 C 1.38595 * 119.91138 * 359.97438 * 20 18 17 23 23 F 1.35101 * 120.02254 * 180.02562 * 22 20 18 24 24 C 1.38222 * 119.95604 * 279.97232 * 16 13 12 25 25 H 0.96997 * 119.99633 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99964 * 359.97438 * 11 9 7 27 27 H 1.08995 * 109.47578 * 59.99623 * 12 11 9 28 28 H 1.09006 * 109.46994 * 299.99592 * 12 11 9 29 29 H 0.96706 * 113.99853 * 60.00134 * 15 13 12 30 30 H 1.08002 * 119.98350 * 359.97438 * 17 16 13 31 31 H 1.07999 * 119.97942 * 0.03065 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8821 2.3964 -1.2126 6 1 1.8821 2.3965 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0582 -2.4804 0.0005 11 7 1.9489 -3.6477 0.0016 12 6 1.2163 -4.9164 0.0010 13 6 2.2105 -6.0794 0.0031 14 1 2.8959 -5.9729 -0.8377 15 8 2.9511 -6.0709 1.2252 16 6 1.4613 -7.3810 -0.1213 17 6 1.3779 -8.0150 -1.3467 18 6 0.6897 -9.2104 -1.4632 19 9 0.6090 -9.8300 -2.6610 20 6 0.0844 -9.7718 -0.3498 21 9 -0.5923 -10.9356 -0.4625 22 6 0.1700 -9.1351 0.8782 23 9 -0.4187 -9.6805 1.9650 24 6 0.8588 -7.9395 0.9903 25 1 -0.4849 0.8401 -0.0004 26 1 2.9189 -3.6478 0.0020 27 1 0.5906 -4.9744 -0.8896 28 1 0.5887 -4.9740 0.8904 29 1 2.4039 -6.1620 2.0173 30 1 1.8494 -7.5771 -2.2141 31 1 0.9250 -7.4426 1.9469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856403006.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = -199.743192 kcal Electronic energy + Delta-G solvation = -21998.878756 eV Core-core repulsion = 17830.849830 eV Total energy + Delta-G solvation = -4168.028926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.071 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.01740 -49.45043 -48.70619 -39.93520 -37.62530 -36.53039 -33.22463 -32.33466 -31.47469 -30.88650 -28.14599 -26.07814 -23.86483 -23.59562 -21.66930 -19.86191 -18.68970 -18.26497 -17.83870 -17.46580 -17.02352 -16.52842 -16.38702 -15.73486 -15.43393 -15.21994 -15.17103 -15.03581 -14.61560 -14.53970 -14.17439 -13.67672 -13.29748 -12.99479 -12.79490 -12.45248 -12.21063 -12.02147 -11.47540 -11.28308 -11.14394 -10.96759 -10.54642 -10.32765 -10.19120 -9.30324 -9.12369 -8.90517 -7.69883 -7.62909 -6.23933 -4.69180 0.32375 0.40890 2.72940 3.01933 3.10548 3.19134 3.23521 3.79073 3.82173 3.92482 4.06639 4.10078 4.30960 4.53577 4.57684 4.82452 5.01662 5.08752 5.14709 5.27460 5.40954 5.44690 5.64600 5.82262 6.17617 6.23119 6.26060 7.39410 7.43862 7.86024 7.98382 8.27196 8.98064 9.44887 10.53771 10.71794 Molecular weight = 289.07amu Principal moments of inertia in cm(-1) A = 0.030621 B = 0.003191 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.188494 B = 8771.644594 C = 8915.780750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.553 3.447 10 O -0.582 6.582 11 N -0.762 5.762 12 C 0.107 3.893 13 C 0.138 3.862 14 H 0.122 0.878 15 O -0.545 6.545 16 C -0.057 4.057 17 C -0.123 4.123 18 C 0.102 3.898 19 F -0.119 7.119 20 C 0.028 3.972 21 F -0.119 7.119 22 C 0.104 3.896 23 F -0.118 7.118 24 C -0.126 4.126 25 H 0.268 0.732 26 H 0.385 0.615 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.376 0.624 30 H 0.158 0.842 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.121 -16.834 -0.057 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.358 3.642 10 O -0.465 6.465 11 N -0.419 5.419 12 C -0.019 4.019 13 C 0.078 3.922 14 H 0.139 0.861 15 O -0.351 6.351 16 C -0.059 4.059 17 C -0.142 4.142 18 C 0.082 3.918 19 F -0.097 7.097 20 C 0.007 3.993 21 F -0.097 7.097 22 C 0.084 3.916 23 F -0.097 7.097 24 C -0.145 4.145 25 H 0.079 0.921 26 H 0.218 0.782 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.225 0.775 30 H 0.176 0.824 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.474 -16.754 -0.470 17.117 hybrid contribution -0.006 0.141 0.276 0.310 sum 3.468 -16.614 -0.194 16.973 Atomic orbital electron populations 1.70030 1.07086 1.27239 1.35308 1.25718 0.94625 1.00363 0.92577 0.86307 0.80510 0.81660 0.78230 1.18720 1.20160 1.20156 1.20914 0.93684 0.89244 1.54212 0.91259 1.18265 0.87200 0.82392 0.76390 1.90607 1.14116 1.86780 1.54953 1.46065 1.08835 1.04097 1.82932 1.21514 0.93793 0.84544 1.02008 1.21209 0.93256 0.88546 0.89181 0.86070 1.86652 1.37213 1.96014 1.15200 1.20362 0.96386 0.97228 0.91892 1.21041 1.00254 0.93258 0.99606 1.17293 1.00878 0.93474 0.80174 1.91573 1.94477 1.81817 1.41830 1.17577 1.01836 0.86554 0.93354 1.91554 1.77411 1.44266 1.96496 1.17244 0.98386 0.93969 0.82032 1.91577 1.81552 1.85086 1.51452 1.20919 0.98204 0.94115 1.01255 0.92121 0.78243 0.92064 0.92661 0.77524 0.82395 0.82779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.60 11.83 55.55 0.66 -21.94 16 2 C 0.09 2.37 5.50 -17.37 -0.10 2.28 16 3 Si 0.91 19.68 29.56 -169.99 -5.02 14.65 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.54 -14.91 9.54 -35.63 -0.34 -15.25 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.55 15.12 7.75 -12.98 -0.10 15.02 16 10 O -0.58 -18.26 15.02 5.20 0.08 -18.18 16 11 N -0.76 -15.70 5.50 -61.72 -0.34 -16.04 16 12 C 0.11 1.76 5.29 -4.04 -0.02 1.74 16 13 C 0.14 1.58 3.24 -27.88 -0.09 1.49 16 14 H 0.12 1.27 8.00 -51.93 -0.42 0.85 16 15 O -0.54 -6.27 13.13 -35.23 -0.46 -6.74 16 16 C -0.06 -0.58 4.97 -104.63 -0.52 -1.10 16 17 C -0.12 -1.17 9.64 -39.52 -0.38 -1.55 16 18 C 0.10 1.10 7.31 -39.38 -0.29 0.81 16 19 F -0.12 -1.35 17.18 2.25 0.04 -1.31 16 20 C 0.03 0.32 7.31 -39.31 -0.29 0.03 16 21 F -0.12 -1.48 17.10 2.25 0.04 -1.44 16 22 C 0.10 1.13 7.31 -39.38 -0.29 0.84 16 23 F -0.12 -1.36 17.18 2.25 0.04 -1.32 16 24 C -0.13 -1.22 9.29 -39.52 -0.37 -1.58 16 25 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 26 H 0.39 7.07 8.45 -40.82 -0.35 6.73 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.38 3.28 7.50 45.56 0.34 3.62 16 30 H 0.16 1.20 8.03 -52.49 -0.42 0.77 16 31 H 0.15 1.17 6.78 -52.49 -0.36 0.81 16 LS Contribution 296.16 15.07 4.46 4.46 Total: -1.00 -34.21 296.16 -4.88 -39.09 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -1.59 Total: 6.05 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.78 Total: 2.72 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.32 Total: -37.98 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.38 Total: -24.92 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.12 Total: -4.07 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.21 -4.88 -39.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856403006.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.651 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds