Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86800 * 120.00305 * 2 1 4 4 H 1.48499 * 109.47458 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46818 * 299.99836 * 3 2 1 6 6 H 1.48502 * 109.47298 * 59.99468 * 3 2 1 7 7 C 1.40046 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00000 * 180.02562 * 7 2 1 9 9 C 1.46382 * 119.99948 * 0.02562 * 7 2 1 10 10 O 1.21687 * 119.99767 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00020 * 180.02562 * 9 7 2 12 12 C 1.46498 * 119.99950 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.46944 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.47196 * 304.99625 * 13 12 11 15 15 O 1.42899 * 109.47623 * 64.99532 * 13 12 11 16 16 C 1.50704 * 109.46932 * 184.99740 * 13 12 11 17 17 C 1.38226 * 119.95281 * 100.00042 * 16 13 12 18 18 C 1.38430 * 120.04300 * 180.02562 * 17 16 13 19 19 F 1.35099 * 120.02334 * 180.02562 * 18 17 16 20 20 C 1.38605 * 119.95469 * 359.97438 * 18 17 16 21 21 F 1.35095 * 120.04349 * 179.72874 * 20 18 17 22 22 C 1.38595 * 119.91138 * 359.97438 * 20 18 17 23 23 F 1.35101 * 120.02254 * 180.02562 * 22 20 18 24 24 C 1.38222 * 119.95604 * 279.97232 * 16 13 12 25 25 H 0.96997 * 119.99633 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99964 * 359.97438 * 11 9 7 27 27 H 1.08995 * 109.47578 * 59.99623 * 12 11 9 28 28 H 1.09006 * 109.46994 * 299.99592 * 12 11 9 29 29 H 0.96706 * 113.99853 * 60.00134 * 15 13 12 30 30 H 1.08002 * 119.98350 * 359.97438 * 17 16 13 31 31 H 1.07999 * 119.97942 * 0.03065 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8821 2.3964 -1.2126 6 1 1.8821 2.3965 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0582 -2.4804 0.0005 11 7 1.9489 -3.6477 0.0016 12 6 1.2163 -4.9164 0.0010 13 6 2.2105 -6.0794 0.0031 14 1 2.8959 -5.9729 -0.8377 15 8 2.9511 -6.0709 1.2252 16 6 1.4613 -7.3810 -0.1213 17 6 1.3779 -8.0150 -1.3467 18 6 0.6897 -9.2104 -1.4632 19 9 0.6090 -9.8300 -2.6610 20 6 0.0844 -9.7718 -0.3498 21 9 -0.5923 -10.9356 -0.4625 22 6 0.1700 -9.1351 0.8782 23 9 -0.4187 -9.6805 1.9650 24 6 0.8588 -7.9395 0.9903 25 1 -0.4849 0.8401 -0.0004 26 1 2.9189 -3.6478 0.0020 27 1 0.5906 -4.9744 -0.8896 28 1 0.5887 -4.9740 0.8904 29 1 2.4039 -6.1620 2.0173 30 1 1.8494 -7.5771 -2.2141 31 1 0.9250 -7.4426 1.9469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856403006.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = -225.759159 kcal Electronic energy + Delta-G solvation = -22000.006893 eV Core-core repulsion = 17830.849830 eV Total energy + Delta-G solvation = -4169.157063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.91423 -50.31601 -49.60833 -40.86037 -39.29535 -37.78927 -34.96671 -34.28062 -32.53346 -31.70302 -29.62625 -27.80772 -24.97708 -24.52242 -22.66461 -21.74173 -19.63226 -19.28425 -19.13337 -18.69659 -17.92108 -17.61986 -17.39212 -17.27439 -16.60524 -16.20914 -16.13093 -16.07920 -15.97238 -15.76933 -15.52457 -15.04037 -14.69041 -14.29156 -13.87092 -13.82145 -13.27944 -13.12253 -12.97642 -12.84447 -12.69629 -12.58978 -12.20319 -11.96097 -11.32615 -10.92469 -10.11381 -10.03553 -9.83027 -9.46113 -8.27081 -6.82193 -0.53837 -0.39226 1.42729 1.43798 1.61115 1.89265 2.17980 2.27438 2.49815 2.87239 2.96232 3.00475 3.26245 3.34835 3.56453 3.67233 3.78938 3.90385 4.14885 4.30228 4.31872 4.59710 4.61792 4.74692 4.82868 5.13648 5.35745 5.40775 5.91116 6.25370 6.29170 6.66107 6.90450 7.57769 8.51742 8.69903 Molecular weight = 289.07amu Principal moments of inertia in cm(-1) A = 0.030621 B = 0.003191 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.188494 B = 8771.644594 C = 8915.780750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.538 3.462 10 O -0.633 6.633 11 N -0.748 5.748 12 C 0.105 3.895 13 C 0.161 3.839 14 H 0.139 0.861 15 O -0.551 6.551 16 C -0.060 4.060 17 C -0.109 4.109 18 C 0.095 3.905 19 F -0.123 7.123 20 C 0.018 3.982 21 F -0.129 7.129 22 C 0.095 3.905 23 F -0.124 7.124 24 C -0.117 4.117 25 H 0.273 0.727 26 H 0.399 0.601 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.389 0.611 30 H 0.182 0.818 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.185 -16.455 -0.069 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.169 1.169 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.608 4.608 8 H 0.106 0.894 9 C 0.342 3.658 10 O -0.521 6.521 11 N -0.403 5.403 12 C -0.020 4.020 13 C 0.101 3.899 14 H 0.157 0.843 15 O -0.358 6.358 16 C -0.062 4.062 17 C -0.128 4.128 18 C 0.074 3.926 19 F -0.102 7.102 20 C -0.003 4.003 21 F -0.107 7.107 22 C 0.075 3.925 23 F -0.103 7.103 24 C -0.135 4.135 25 H 0.083 0.917 26 H 0.233 0.767 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.239 0.761 30 H 0.199 0.801 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.585 -16.433 -0.472 17.363 hybrid contribution -0.659 -0.070 0.298 0.727 sum 4.926 -16.503 -0.174 17.224 Atomic orbital electron populations 1.70191 1.09494 1.28805 1.36745 1.26941 0.95474 1.04916 0.91254 0.84997 0.79461 0.75601 0.78393 1.16911 1.19525 1.19560 1.21475 0.94804 0.90105 1.54454 0.89370 1.18581 0.86770 0.84419 0.76057 1.90564 1.16254 1.87996 1.57248 1.45648 1.09470 1.04123 1.81098 1.21690 0.94753 0.84543 1.01033 1.20916 0.92183 0.86813 0.90002 0.84333 1.86641 1.37620 1.95871 1.15714 1.20202 0.96843 0.96823 0.92297 1.21261 0.99008 0.92365 1.00160 1.17347 1.01435 0.93942 0.79826 1.91561 1.94584 1.81999 1.42043 1.17821 1.02050 0.86415 0.94017 1.91524 1.77722 1.44902 1.96591 1.17305 0.99035 0.94452 0.81713 1.91561 1.81777 1.85264 1.51672 1.21144 0.96828 0.93396 1.02154 0.91663 0.76678 0.93268 0.93601 0.76077 0.80102 0.80757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.34 11.83 21.84 0.26 -49.08 16 2 C 0.03 1.58 5.50 85.30 0.47 2.05 16 3 Si 1.00 39.81 29.56 68.60 2.03 41.83 16 4 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 6 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.57 -31.21 9.54 24.83 0.24 -30.97 16 8 H 0.09 4.30 7.85 -2.91 -0.02 4.28 16 9 C 0.54 29.65 7.75 86.36 0.67 30.32 16 10 O -0.63 -40.86 15.02 -4.31 -0.06 -40.93 16 11 N -0.75 -30.20 5.50 -467.41 -2.57 -32.77 16 12 C 0.10 3.34 5.29 86.38 0.46 3.80 16 13 C 0.16 3.27 3.24 29.85 0.10 3.36 16 14 H 0.14 2.41 8.00 -2.39 -0.02 2.39 16 15 O -0.55 -11.10 13.13 -148.98 -1.96 -13.06 16 16 C -0.06 -1.07 4.97 -19.87 -0.10 -1.17 16 17 C -0.11 -1.84 9.64 22.31 0.22 -1.63 16 18 C 0.09 1.91 7.31 22.40 0.16 2.08 16 19 F -0.12 -2.68 17.18 44.97 0.77 -1.90 16 20 C 0.02 0.40 7.31 22.44 0.16 0.56 16 21 F -0.13 -3.20 17.10 44.97 0.77 -2.43 16 22 C 0.10 1.96 7.31 22.40 0.16 2.13 16 23 F -0.12 -2.77 17.18 44.97 0.77 -2.00 16 24 C -0.12 -2.03 9.29 22.31 0.21 -1.82 16 25 H 0.27 14.85 8.29 -92.71 -0.77 14.08 16 26 H 0.40 13.92 8.45 -92.71 -0.78 13.13 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.39 5.71 7.50 -74.05 -0.56 5.16 16 30 H 0.18 2.17 8.03 -2.91 -0.02 2.15 16 31 H 0.18 2.23 6.78 -2.91 -0.02 2.21 16 Total: -1.00 -75.49 296.16 2.64 -72.85 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -0.11 Total: 18.77 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 2.74 Total: 8.71 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -2.31 Total: -81.85 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -2.02 Total: -53.98 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 2.31 Total: -6.34 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.83 kcal Total: -75.49 2.64 -72.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856403006.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.909 kcal (2) G-P(sol) polarization free energy of solvation -75.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds