Wall clock time and date at job start Tue Mar 31 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99780 * 2 1 4 4 H 1.48495 * 109.47317 * 270.00508 * 3 2 1 5 5 H 1.48494 * 109.46771 * 30.00447 * 3 2 1 6 6 H 1.48496 * 109.46731 * 149.99976 * 3 2 1 7 7 C 1.37879 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99597 * 189.57915 * 7 2 1 9 9 C 1.50699 * 120.00326 * 9.57738 * 7 2 1 10 10 H 1.09001 * 109.47094 * 185.82353 * 9 7 2 11 11 O 1.42894 * 109.47022 * 305.82609 * 9 7 2 12 12 C 1.35938 * 117.00103 * 276.84413 * 11 9 7 13 13 C 1.39166 * 120.45285 * 6.69463 * 12 11 9 14 14 C 1.38490 * 118.38602 * 179.78667 * 13 12 11 15 15 C 1.38418 * 119.21006 * 0.51458 * 14 13 12 16 16 Cl 1.73603 * 119.57502 * 179.70290 * 15 14 13 17 17 N 1.31921 * 120.85049 * 359.72571 * 15 14 13 18 18 C 1.31883 * 121.76472 * 0.02562 * 17 15 14 19 19 C 1.50705 * 109.46807 * 65.82089 * 9 7 2 20 20 C 1.38233 * 119.99690 * 89.53384 * 19 9 7 21 21 C 1.38231 * 119.99995 * 179.97438 * 20 19 9 22 22 C 1.38233 * 120.00007 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99927 * 359.97438 * 22 21 20 24 24 C 1.38228 * 120.00029 * 0.07312 * 23 22 21 25 25 H 0.96997 * 120.00286 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.80491 * 0.02562 * 13 12 11 27 27 H 1.08004 * 120.39876 * 180.24150 * 14 13 12 28 28 H 1.07995 * 119.64852 * 179.97438 * 18 17 15 29 29 H 1.08004 * 120.00206 * 359.97438 * 20 19 9 30 30 H 1.08007 * 119.99995 * 179.97438 * 21 20 19 31 31 H 1.08003 * 120.00003 * 179.72038 * 22 21 20 32 32 H 1.08005 * 119.99634 * 179.97438 * 23 22 21 33 33 H 1.07999 * 120.00303 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0733 -1.2006 0.1551 9 6 1.2669 -2.4900 -0.2182 10 1 1.9533 -3.3259 -0.0831 11 8 0.1982 -2.5939 0.7246 12 6 0.5105 -3.0606 1.9625 13 6 1.8373 -3.2833 2.3184 14 6 2.1071 -3.7550 3.5922 15 6 1.0559 -3.9980 4.4593 16 17 1.3828 -4.5967 6.0556 17 7 -0.1912 -3.7808 4.0880 18 6 -0.4888 -3.3275 2.8859 19 6 0.7073 -2.5205 -1.6172 20 6 1.4643 -3.0345 -2.6533 21 6 0.9509 -3.0630 -3.9364 22 6 -0.3198 -2.5780 -4.1834 23 6 -1.0772 -2.0650 -3.1470 24 6 -0.5634 -2.0356 -1.8641 25 1 -0.4850 0.8400 0.0004 26 1 2.6374 -3.0892 1.6194 27 1 3.1254 -3.9354 3.9039 28 1 -1.5219 -3.1622 2.6178 29 1 2.4570 -3.4139 -2.4604 30 1 1.5426 -3.4643 -4.7461 31 1 -0.7192 -2.5961 -5.1867 32 1 -2.0699 -1.6856 -3.3401 33 1 -1.1550 -1.6344 -1.0545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225597027.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:38 Heat of formation + Delta-G solvation = 17.974851 kcal Electronic energy + Delta-G solvation = -20046.004251 eV Core-core repulsion = 16869.982192 eV Total energy + Delta-G solvation = -3176.022058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 289.061 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.95126 -38.53572 -37.11210 -36.05698 -33.18212 -31.79097 -31.01774 -30.02823 -29.19791 -27.16401 -23.81775 -23.15080 -22.28066 -21.57618 -20.28350 -17.79792 -16.86900 -16.54396 -16.10313 -15.64062 -15.08641 -14.31436 -14.24946 -14.09006 -13.69954 -13.40227 -13.14693 -12.81622 -12.55563 -12.19523 -12.04592 -11.83828 -11.26334 -11.13443 -11.08643 -10.97563 -10.66657 -10.63100 -10.24790 -9.76220 -9.59240 -9.26040 -9.22441 -8.83563 -8.08333 -7.78574 -7.47854 -6.33040 -4.54007 1.55174 1.75747 2.18848 2.26898 2.30342 3.12946 3.21112 3.22272 4.14256 4.18292 4.22457 4.69831 4.94152 5.02166 5.34220 5.46289 5.52983 5.60098 5.68870 5.79995 6.03431 6.06090 6.23348 6.31899 6.45052 6.54264 6.69673 6.80388 6.83362 7.00703 7.23330 7.38947 7.51996 7.64660 7.69254 7.92306 8.11021 8.30807 8.63486 9.20375 10.64517 Molecular weight = 289.06amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.005250 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.007335 B = 5331.806825 C = 6249.326378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.089 3.911 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.561 4.561 8 H 0.070 0.930 9 C 0.238 3.762 10 H 0.036 0.964 11 O -0.272 6.272 12 C 0.142 3.858 13 C -0.156 4.156 14 C -0.113 4.113 15 C 0.102 3.898 16 Cl -0.060 7.060 17 N -0.447 5.447 18 C 0.063 3.937 19 C -0.037 4.037 20 C -0.125 4.125 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.140 4.140 24 C -0.070 4.070 25 H 0.267 0.733 26 H 0.153 0.847 27 H 0.135 0.865 28 H 0.164 0.836 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 -5.710 0.129 5.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.121 4.121 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.597 4.597 8 H 0.088 0.912 9 C 0.184 3.816 10 H 0.054 0.946 11 O -0.181 6.181 12 C 0.089 3.911 13 C -0.182 4.182 14 C -0.134 4.134 15 C -0.062 4.062 16 Cl -0.032 7.032 17 N -0.158 5.158 18 C -0.097 4.097 19 C -0.037 4.037 20 C -0.143 4.143 21 C -0.155 4.155 22 C -0.163 4.163 23 C -0.158 4.158 24 C -0.088 4.088 25 H 0.077 0.923 26 H 0.171 0.829 27 H 0.153 0.847 28 H 0.181 0.819 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.431 -5.739 0.744 5.803 hybrid contribution 1.466 1.328 -0.569 2.058 sum 1.897 -4.411 0.175 4.805 Atomic orbital electron populations 1.69954 1.05967 1.27230 1.43665 1.24973 0.94807 0.99411 0.92904 0.86589 0.80164 0.82905 0.78507 1.20179 1.20873 1.19583 1.21291 0.94571 0.90349 1.53460 0.91239 1.19058 0.83819 0.96238 0.82469 0.94635 1.86312 1.39649 1.75106 1.17030 1.20207 0.93069 0.89309 0.88473 1.21861 0.97398 1.02016 0.96967 1.21563 0.99148 0.99504 0.93199 1.21141 0.90544 1.06042 0.88434 1.98334 1.94482 1.86732 1.23697 1.66835 1.20594 1.11201 1.17145 1.21905 0.99451 1.01302 0.87038 1.19871 0.93704 0.95099 0.95068 1.20746 0.99345 1.01447 0.92746 1.20802 0.96058 1.02436 0.96248 1.20885 0.95330 1.01910 0.98200 1.21147 0.99492 1.01319 0.93825 1.21472 0.95721 0.94912 0.96739 0.92305 0.82905 0.84718 0.81863 0.87209 0.87430 0.87712 0.87480 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.86 9.60 55.43 0.53 -20.32 16 2 C 0.09 2.18 5.22 -17.82 -0.09 2.09 16 3 Si 0.89 19.61 29.55 -169.99 -5.02 14.59 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.56 -13.38 7.74 -34.44 -0.27 -13.65 16 8 H 0.07 1.64 7.83 -52.48 -0.41 1.23 16 9 C 0.24 5.21 2.10 -29.03 -0.06 5.15 16 10 H 0.04 0.73 6.48 -51.93 -0.34 0.39 16 11 O -0.27 -6.02 7.61 -19.54 -0.15 -6.17 16 12 C 0.14 2.85 6.59 -39.08 -0.26 2.60 16 13 C -0.16 -2.87 8.75 -39.14 -0.34 -3.21 16 14 C -0.11 -1.87 9.87 -39.42 -0.39 -2.26 16 15 C 0.10 1.78 7.27 -17.45 -0.13 1.65 16 16 Cl -0.06 -0.91 29.10 -51.86 -1.51 -2.42 16 17 N -0.45 -8.41 10.33 -10.24 -0.11 -8.51 16 18 C 0.06 1.19 11.14 -17.38 -0.19 0.99 16 19 C -0.04 -0.79 4.83 -104.62 -0.51 -1.29 16 20 C -0.12 -2.37 9.70 -39.59 -0.38 -2.76 16 21 C -0.14 -2.36 10.05 -39.59 -0.40 -2.76 16 22 C -0.15 -2.48 10.05 -39.58 -0.40 -2.88 16 23 C -0.14 -2.61 10.05 -39.59 -0.40 -3.00 16 24 C -0.07 -1.50 8.14 -39.59 -0.32 -1.82 16 25 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 26 H 0.15 2.76 5.80 -52.49 -0.30 2.46 16 27 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 28 H 0.16 2.82 8.06 -52.49 -0.42 2.40 16 29 H 0.11 1.88 8.06 -52.48 -0.42 1.46 16 30 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 31 H 0.10 1.49 8.06 -52.48 -0.42 1.07 16 32 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16 33 H 0.15 3.44 5.99 -52.49 -0.31 3.12 16 LS Contribution 301.77 15.07 4.55 4.55 Total: -1.00 -25.58 301.77 -8.88 -34.46 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -3.04 Total: 4.96 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -4.13 Total: -21.14 kcal Atomic # 7 Polarization: -29.26 SS G_CDS: 0.43 Total: -28.84 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.15 Total: -6.17 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.51 Total: -2.42 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -25.58 -8.88 -34.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225597027.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.440 kcal (2) G-P(sol) polarization free energy of solvation -25.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds