Wall clock time and date at job start Tue Mar 31 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99780 * 2 1 4 4 H 1.48495 * 109.47317 * 270.00508 * 3 2 1 5 5 H 1.48494 * 109.46771 * 30.00447 * 3 2 1 6 6 H 1.48496 * 109.46731 * 149.99976 * 3 2 1 7 7 C 1.37879 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99597 * 189.57915 * 7 2 1 9 9 C 1.50699 * 120.00326 * 9.57738 * 7 2 1 10 10 H 1.09001 * 109.47094 * 185.82353 * 9 7 2 11 11 O 1.42894 * 109.47022 * 305.82609 * 9 7 2 12 12 C 1.35938 * 117.00103 * 276.84413 * 11 9 7 13 13 C 1.39166 * 120.45285 * 6.69463 * 12 11 9 14 14 C 1.38490 * 118.38602 * 179.78667 * 13 12 11 15 15 C 1.38418 * 119.21006 * 0.51458 * 14 13 12 16 16 Cl 1.73603 * 119.57502 * 179.70290 * 15 14 13 17 17 N 1.31921 * 120.85049 * 359.72571 * 15 14 13 18 18 C 1.31883 * 121.76472 * 0.02562 * 17 15 14 19 19 C 1.50705 * 109.46807 * 65.82089 * 9 7 2 20 20 C 1.38233 * 119.99690 * 89.53384 * 19 9 7 21 21 C 1.38231 * 119.99995 * 179.97438 * 20 19 9 22 22 C 1.38233 * 120.00007 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99927 * 359.97438 * 22 21 20 24 24 C 1.38228 * 120.00029 * 0.07312 * 23 22 21 25 25 H 0.96997 * 120.00286 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.80491 * 0.02562 * 13 12 11 27 27 H 1.08004 * 120.39876 * 180.24150 * 14 13 12 28 28 H 1.07995 * 119.64852 * 179.97438 * 18 17 15 29 29 H 1.08004 * 120.00206 * 359.97438 * 20 19 9 30 30 H 1.08007 * 119.99995 * 179.97438 * 21 20 19 31 31 H 1.08003 * 120.00003 * 179.72038 * 22 21 20 32 32 H 1.08005 * 119.99634 * 179.97438 * 23 22 21 33 33 H 1.07999 * 120.00303 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0733 -1.2006 0.1551 9 6 1.2669 -2.4900 -0.2182 10 1 1.9533 -3.3259 -0.0831 11 8 0.1982 -2.5939 0.7246 12 6 0.5105 -3.0606 1.9625 13 6 1.8373 -3.2833 2.3184 14 6 2.1071 -3.7550 3.5922 15 6 1.0559 -3.9980 4.4593 16 17 1.3828 -4.5967 6.0556 17 7 -0.1912 -3.7808 4.0880 18 6 -0.4888 -3.3275 2.8859 19 6 0.7073 -2.5205 -1.6172 20 6 1.4643 -3.0345 -2.6533 21 6 0.9509 -3.0630 -3.9364 22 6 -0.3198 -2.5780 -4.1834 23 6 -1.0772 -2.0650 -3.1470 24 6 -0.5634 -2.0356 -1.8641 25 1 -0.4850 0.8400 0.0004 26 1 2.6374 -3.0892 1.6194 27 1 3.1254 -3.9354 3.9039 28 1 -1.5219 -3.1622 2.6178 29 1 2.4570 -3.4139 -2.4604 30 1 1.5426 -3.4643 -4.7461 31 1 -0.7192 -2.5961 -5.1867 32 1 -2.0699 -1.6856 -3.3401 33 1 -1.1550 -1.6344 -1.0545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225597027.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:38 Heat of formation + Delta-G solvation = 6.594220 kcal Electronic energy + Delta-G solvation = -20046.497752 eV Core-core repulsion = 16869.982192 eV Total energy + Delta-G solvation = -3176.515560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 289.061 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.43047 -40.00665 -38.60588 -37.38629 -34.91471 -33.22062 -32.59464 -31.46975 -30.66005 -28.82667 -25.46477 -24.59912 -23.76542 -23.01384 -21.80136 -19.40232 -18.39935 -18.02140 -17.62722 -17.07766 -16.84496 -15.84870 -15.72975 -15.50728 -15.12827 -14.98194 -14.64232 -14.27200 -13.98749 -13.71192 -13.56495 -13.37492 -12.90503 -12.84508 -12.60332 -12.28595 -12.23545 -12.13058 -11.74836 -11.36787 -11.17687 -10.74835 -10.69026 -10.58374 -9.53020 -9.28568 -9.00537 -8.13241 -6.38757 0.13271 0.28769 0.73465 0.85496 0.91269 1.37207 1.41597 1.46718 2.35353 2.63655 2.75811 3.15134 3.24264 3.60613 3.90144 4.07913 4.11242 4.26883 4.33023 4.43914 4.54253 4.66083 4.73706 4.89394 5.00597 5.07773 5.26882 5.37188 5.37433 5.53750 5.63708 5.80637 5.88649 5.97167 6.16804 6.42201 6.50221 6.72493 6.98890 7.37231 8.81233 Molecular weight = 289.06amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.005250 C = 0.004479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.007335 B = 5331.806825 C = 6249.326378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.051 3.949 3 Si 0.937 3.063 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.568 4.568 8 H 0.066 0.934 9 C 0.239 3.761 10 H 0.043 0.957 11 O -0.289 6.289 12 C 0.115 3.885 13 C -0.158 4.158 14 C -0.104 4.104 15 C 0.097 3.903 16 Cl -0.035 7.035 17 N -0.459 5.459 18 C 0.056 3.944 19 C -0.064 4.064 20 C -0.136 4.136 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.093 4.093 25 H 0.262 0.738 26 H 0.154 0.846 27 H 0.169 0.831 28 H 0.170 0.830 29 H 0.124 0.876 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.124 0.876 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 -6.441 -0.574 6.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.156 4.156 3 Si 0.763 3.237 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.605 4.605 8 H 0.084 0.916 9 C 0.185 3.815 10 H 0.060 0.940 11 O -0.200 6.200 12 C 0.063 3.937 13 C -0.184 4.184 14 C -0.124 4.124 15 C -0.067 4.067 16 Cl -0.007 7.007 17 N -0.171 5.171 18 C -0.102 4.102 19 C -0.064 4.064 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.158 4.158 23 C -0.166 4.166 24 C -0.111 4.111 25 H 0.071 0.929 26 H 0.171 0.829 27 H 0.187 0.813 28 H 0.187 0.813 29 H 0.142 0.858 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.142 0.858 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.540 -6.479 0.050 6.660 hybrid contribution 1.143 1.446 -0.286 1.865 sum 2.683 -5.033 -0.236 5.708 Atomic orbital electron populations 1.70089 1.06653 1.27071 1.44891 1.25516 0.95380 1.01511 0.93236 0.85884 0.79264 0.80414 0.78093 1.20383 1.21367 1.19221 1.21498 0.94508 0.91396 1.53078 0.91558 1.19031 0.83943 0.95534 0.83033 0.93968 1.86272 1.39745 1.76075 1.17875 1.20470 0.94266 0.90683 0.88247 1.21947 0.96656 1.01958 0.97868 1.21856 1.00607 0.97933 0.92025 1.21516 0.90381 1.05166 0.89622 1.98343 1.94276 1.86297 1.21776 1.66895 1.21541 1.11657 1.16970 1.22000 0.99723 1.01412 0.87101 1.20001 0.94370 0.96720 0.95336 1.21021 0.99873 1.01335 0.93136 1.21245 0.96333 1.01141 0.96349 1.21307 0.95047 1.00132 0.99303 1.21390 1.00581 1.01357 0.93269 1.21320 0.96033 0.96454 0.97324 0.92859 0.82862 0.81336 0.81289 0.85798 0.83792 0.84091 0.85803 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.96 9.60 21.45 0.21 -43.76 16 2 C 0.05 2.53 5.22 84.65 0.44 2.97 16 3 Si 0.94 40.59 29.55 68.60 2.03 42.62 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.57 -27.49 7.74 25.60 0.20 -27.29 16 8 H 0.07 3.14 7.83 -2.91 -0.02 3.12 16 9 C 0.24 10.67 2.10 29.10 0.06 10.73 16 10 H 0.04 1.76 6.48 -2.39 -0.02 1.74 16 11 O -0.29 -13.30 7.61 -92.85 -0.71 -14.01 16 12 C 0.11 4.71 6.59 22.59 0.15 4.86 16 13 C -0.16 -5.76 8.75 22.55 0.20 -5.56 16 14 C -0.10 -3.25 9.87 22.37 0.22 -3.03 16 15 C 0.10 3.26 7.27 84.72 0.62 3.87 16 16 Cl -0.04 -0.98 29.10 -2.72 -0.08 -1.06 16 17 N -0.46 -17.10 10.33 -186.32 -1.93 -19.02 16 18 C 0.06 2.18 11.14 84.78 0.94 3.12 16 19 C -0.06 -2.75 4.83 -19.87 -0.10 -2.85 16 20 C -0.14 -4.99 9.70 22.27 0.22 -4.78 16 21 C -0.13 -4.18 10.05 22.27 0.22 -3.95 16 22 C -0.14 -4.39 10.05 22.27 0.22 -4.17 16 23 C -0.15 -5.40 10.05 22.27 0.22 -5.17 16 24 C -0.09 -4.04 8.14 22.27 0.18 -3.86 16 25 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 26 H 0.15 5.53 5.80 -2.91 -0.02 5.51 16 27 H 0.17 4.06 8.06 -2.91 -0.02 4.03 16 28 H 0.17 6.09 8.06 -2.91 -0.02 6.06 16 29 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 31 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 32 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 33 H 0.12 5.89 5.99 -2.91 -0.02 5.87 16 Total: -1.00 -55.06 301.77 4.46 -50.60 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 1.14 Total: 19.73 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 3.80 Total: -35.10 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -1.72 Total: -62.78 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.71 Total: -14.01 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -55.06 4.46 -50.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225597027.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.198 kcal (2) G-P(sol) polarization free energy of solvation -55.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds