Wall clock time and date at job start Tue Mar 31 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99938 * 2 1 4 4 H 1.48502 * 109.46757 * 269.99741 * 3 2 1 5 5 H 1.48490 * 109.47218 * 29.99507 * 3 2 1 6 6 H 1.48503 * 109.46876 * 149.99843 * 3 2 1 7 7 C 1.37880 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99705 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00116 * 180.02562 * 7 2 1 10 10 C 1.52991 * 109.47201 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47254 * 179.97438 * 10 9 7 12 12 C 1.81399 * 103.00190 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47101 * 180.02562 * 12 11 10 14 14 C 1.35591 * 119.87921 * 105.01922 * 13 12 11 15 15 C 1.46412 * 118.52983 * 179.97438 * 14 13 12 16 16 C 1.39885 * 121.14721 * 179.97438 * 15 14 13 17 17 C 1.36603 * 119.71854 * 180.02562 * 16 15 14 18 18 C 1.38837 * 120.58456 * 359.95687 * 17 16 15 19 19 C 1.37809 * 120.69445 * 0.06760 * 18 17 16 20 20 C 1.39118 * 119.74172 * 359.95223 * 19 18 17 21 21 N 1.37869 * 120.96864 * 179.97438 * 20 19 18 22 22 H 0.97002 * 119.52011 * 0.04424 * 21 20 19 23 23 C 1.34450 * 120.95381 * 180.02562 * 21 20 19 24 24 O 1.21883 * 119.17938 * 179.97438 * 23 21 20 25 25 H 0.96993 * 119.99982 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46794 * 59.99963 * 9 7 2 27 27 H 1.08994 * 109.46737 * 300.00060 * 9 7 2 28 28 H 1.09007 * 109.47235 * 59.99756 * 10 9 7 29 29 H 1.09002 * 109.47333 * 300.00117 * 10 9 7 30 30 H 1.09000 * 109.47088 * 59.99663 * 12 11 10 31 31 H 1.09010 * 109.46890 * 299.99841 * 12 11 10 32 32 H 1.08001 * 120.73822 * 359.97438 * 14 13 12 33 33 H 1.08000 * 120.14532 * 359.75099 * 16 15 14 34 34 H 1.08002 * 119.70633 * 179.97438 * 17 16 15 35 35 H 1.08008 * 119.65444 * 180.02562 * 18 17 16 36 36 H 1.07999 * 120.12703 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0023 11 16 5.8356 -2.6365 0.0022 12 6 6.2437 -4.4040 0.0029 13 6 7.7411 -4.5739 0.0035 14 6 8.3775 -4.9524 1.1394 15 6 9.8328 -5.1090 1.1066 16 6 10.5447 -5.4967 2.2466 17 6 11.9024 -5.6335 2.1832 18 6 12.5821 -5.3919 0.9970 19 6 11.9015 -5.0085 -0.1383 20 6 10.5186 -4.8624 -0.0976 21 7 9.8124 -4.4796 -1.2180 22 1 10.2865 -4.3102 -2.0472 23 6 8.4759 -4.3380 -1.1782 24 8 7.8841 -3.9976 -2.1879 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8912 27 1 3.8752 -0.6805 -0.8888 28 1 3.6586 -3.1510 -0.8875 29 1 3.6579 -3.1498 0.8925 30 1 5.8247 -4.8740 -0.8869 31 1 5.8247 -4.8733 0.8931 32 1 7.8232 -5.1344 2.0483 33 1 10.0237 -5.6828 3.1741 34 1 12.4519 -5.9324 3.0637 35 1 13.6558 -5.5050 0.9637 36 1 12.4395 -4.8226 -1.0561 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190944405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:51 Heat of formation + Delta-G solvation = -3.909970 kcal Electronic energy + Delta-G solvation = -19009.220687 eV Core-core repulsion = 15970.126432 eV Total energy + Delta-G solvation = -3039.094255 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53046 -38.94167 -35.67510 -35.11775 -33.65686 -31.59396 -31.18029 -29.96051 -27.45799 -25.46127 -24.19175 -23.20288 -22.77356 -20.70288 -18.81834 -18.14659 -17.54769 -16.92889 -16.05270 -15.95911 -15.45949 -15.09647 -14.81702 -14.31733 -14.29720 -14.01263 -13.73443 -13.44504 -13.19268 -12.81682 -12.70126 -12.66230 -11.85145 -11.69958 -11.61901 -11.26600 -11.10755 -10.73885 -10.30850 -10.21906 -9.99189 -9.86884 -9.50468 -9.11802 -8.86114 -8.55464 -8.22961 -7.11921 -6.06665 -4.06145 0.09188 0.83558 1.42727 2.18764 2.66559 2.91283 3.19301 3.34024 3.40607 3.46828 3.65145 4.10679 4.16728 4.30086 4.45571 4.46676 4.72282 4.79826 4.84388 5.11737 5.27625 5.29866 5.33136 5.43919 5.62794 5.68365 5.86590 5.95132 5.99052 6.06161 6.07428 6.29836 6.45838 6.60660 6.76825 7.17562 7.29532 7.70581 7.82996 8.47455 8.95239 9.54398 11.06128 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.032830 B = 0.002941 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.673668 B = 9518.619583 C = 9632.428332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.519 4.519 8 H 0.074 0.926 9 C 0.003 3.997 10 C -0.052 4.052 11 S -0.277 6.277 12 C -0.032 4.032 13 C -0.154 4.154 14 C -0.014 4.014 15 C -0.126 4.126 16 C -0.054 4.054 17 C -0.154 4.154 18 C -0.068 4.068 19 C -0.165 4.165 20 C 0.185 3.815 21 N -0.633 5.633 22 H 0.415 0.585 23 C 0.540 3.460 24 O -0.511 6.511 25 H 0.264 0.736 26 H 0.025 0.975 27 H 0.022 0.978 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.148 0.852 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.529 -14.485 4.530 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.200 4.200 11 S -0.048 6.048 12 C -0.180 4.180 13 C -0.158 4.158 14 C -0.037 4.037 15 C -0.129 4.129 16 C -0.073 4.073 17 C -0.173 4.173 18 C -0.087 4.087 19 C -0.186 4.186 20 C 0.082 3.918 21 N -0.272 5.272 22 H 0.253 0.747 23 C 0.334 3.666 24 O -0.388 6.388 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 27.489 -13.295 4.006 30.797 hybrid contribution -0.195 -0.059 -0.357 0.411 sum 27.294 -13.354 3.650 30.604 Atomic orbital electron populations 1.69899 1.06254 1.27066 1.50695 1.24962 0.94741 0.99160 0.94279 0.86783 0.80460 0.83431 0.78788 1.20072 1.21235 1.18785 1.20973 0.88488 0.94742 1.51665 0.90805 1.19359 0.97047 0.89653 0.97544 1.23481 0.88035 1.04489 1.03968 1.87009 1.12418 1.07279 1.98046 1.21913 0.92319 0.98056 1.05679 1.20237 0.95868 1.06092 0.93598 1.22532 0.91823 0.91663 0.97730 1.18642 0.93071 1.07997 0.93200 1.20904 0.94250 0.95325 0.96774 1.20822 0.94405 1.03592 0.98485 1.21109 1.00142 0.95476 0.91954 1.20743 0.91182 1.06355 1.00341 1.18008 0.91824 0.95292 0.86628 1.43466 1.08366 1.62753 1.12586 0.74691 1.16818 0.80943 0.78787 0.90071 1.91010 1.67094 1.45526 1.35195 0.92575 0.95632 0.95972 0.90708 0.90774 0.88714 0.89079 0.83437 0.84657 0.85345 0.85202 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 2 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.00 0.07 4.05 -27.89 -0.11 -0.04 16 10 C -0.05 -1.10 5.88 37.15 0.22 -0.88 16 11 S -0.28 -5.32 21.61 -107.50 -2.32 -7.65 16 12 C -0.03 -0.47 5.67 36.01 0.20 -0.26 16 13 C -0.15 -2.04 5.16 -104.47 -0.54 -2.58 16 14 C -0.01 -0.14 9.69 -37.24 -0.36 -0.50 16 15 C -0.13 -1.15 5.87 -105.04 -0.62 -1.76 16 16 C -0.05 -0.36 9.79 -39.56 -0.39 -0.75 16 17 C -0.15 -0.85 9.97 -39.95 -0.40 -1.25 16 18 C -0.07 -0.37 10.01 -39.52 -0.40 -0.77 16 19 C -0.17 -1.10 9.92 -39.41 -0.39 -1.49 16 20 C 0.19 1.70 6.65 -83.88 -0.56 1.14 16 21 N -0.63 -6.76 5.30 -12.61 -0.07 -6.83 16 22 H 0.41 3.52 8.77 -40.82 -0.36 3.16 16 23 C 0.54 7.78 7.62 -15.30 -0.12 7.67 16 24 O -0.51 -9.32 17.10 5.02 0.09 -9.24 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 27 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 28 H 0.07 1.57 8.14 -51.92 -0.42 1.15 16 29 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 30 H 0.09 1.45 8.00 -51.92 -0.42 1.03 16 31 H 0.09 1.10 7.93 -51.92 -0.41 0.69 16 32 H 0.15 1.10 7.99 -52.49 -0.42 0.68 16 33 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 35 H 0.13 0.39 8.06 -52.48 -0.42 -0.04 16 36 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -35.28 323.87 -9.70 -44.98 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -4.49 Total: -1.69 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -3.88 Total: -14.88 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.71 Total: -34.08 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -2.32 Total: -7.65 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.28 -9.70 -44.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190944405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.067 kcal (2) G-P(sol) polarization free energy of solvation -35.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds