Wall clock time and date at job start Tue Mar 31 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00143 * 2 1 4 4 H 1.48504 * 109.46907 * 239.99756 * 3 2 1 5 5 H 1.48498 * 109.47250 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47331 * 119.99906 * 3 2 1 7 7 C 1.37885 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99760 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99773 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.50867 * 300.07904 * 9 7 2 11 11 C 1.53120 * 109.50204 * 179.97438 * 9 7 2 12 12 C 1.53114 * 109.16161 * 182.40736 * 11 9 7 13 13 C 1.53036 * 109.27799 * 57.65854 * 12 11 9 14 14 N 1.46850 * 109.52384 * 300.81924 * 13 12 11 15 15 C 1.38694 * 111.00126 * 185.84198 * 14 13 12 16 16 N 1.30244 * 126.16620 * 235.73325 * 15 14 13 17 17 N 1.26105 * 117.62097 * 179.75967 * 16 15 14 18 18 C 1.29319 * 117.96583 * 0.55492 * 17 16 15 19 19 C 1.50700 * 126.05927 * 179.72557 * 18 17 16 20 20 F 1.39897 * 109.47737 * 29.98360 * 19 18 17 21 21 F 1.39904 * 109.46708 * 149.97986 * 19 18 17 22 22 S 1.76475 * 107.87228 * 359.71198 * 18 17 16 23 23 C 1.46846 * 111.19870 * 61.74019 * 14 13 12 24 24 H 0.97003 * 120.00294 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.52336 * 62.50472 * 11 9 7 26 26 H 1.09002 * 109.52444 * 302.31431 * 11 9 7 27 27 H 1.09004 * 109.50600 * 297.71890 * 12 11 9 28 28 H 1.08997 * 109.50718 * 177.59550 * 12 11 9 29 29 H 1.08995 * 109.46942 * 60.83456 * 13 12 11 30 30 H 1.08998 * 109.46530 * 180.80782 * 13 12 11 31 31 H 1.09000 * 109.47339 * 269.97738 * 19 18 17 32 32 H 1.08993 * 109.46639 * 178.24333 * 23 14 13 33 33 H 1.09010 * 109.45973 * 58.27499 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6233 -2.5563 0.8910 11 6 2.2453 -3.6636 0.0015 12 6 1.4727 -4.9842 -0.0581 13 6 0.5890 -4.9967 -1.3075 14 7 -0.3448 -3.8644 -1.2595 15 6 -1.2476 -3.9197 -2.3110 16 7 -1.4603 -2.9837 -3.1914 17 7 -2.3199 -3.2075 -4.0865 18 6 -2.9380 -4.3432 -4.0633 19 6 -3.9973 -4.7966 -5.0346 20 9 -3.7684 -4.2077 -6.2828 21 9 -3.9493 -6.1892 -5.1603 22 16 -2.3209 -5.2678 -2.6927 23 6 0.3736 -2.5837 -1.2495 24 1 -0.4851 0.8400 -0.0004 25 1 2.8432 -3.6322 0.9122 26 1 2.8988 -3.5844 -0.8673 27 1 0.8483 -5.0810 0.8301 28 1 2.1760 -5.8157 -0.1016 29 1 1.2149 -4.9138 -2.1960 30 1 0.0267 -5.9297 -1.3454 31 1 -4.9791 -4.4986 -4.6668 32 1 -0.3449 -1.7642 -1.2452 33 1 1.0007 -2.5121 -2.1382 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596327770.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:03 Heat of formation + Delta-G solvation = -34.026867 kcal Electronic energy + Delta-G solvation = -20734.824794 eV Core-core repulsion = 17172.487794 eV Total energy + Delta-G solvation = -3562.337000 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.23360 -47.25539 -40.93882 -38.64674 -34.17383 -32.73556 -31.12512 -29.88158 -27.47074 -25.34655 -24.94043 -23.18666 -21.96231 -20.10782 -19.22118 -18.80063 -17.83915 -17.47270 -17.10308 -16.41046 -15.57352 -15.31865 -14.57934 -14.34064 -14.09974 -13.95245 -13.61407 -13.53963 -13.37703 -13.09987 -12.82500 -12.54883 -12.08824 -11.89079 -11.11151 -11.00259 -10.73131 -10.56208 -10.50769 -10.34635 -10.24650 -9.96711 -9.73494 -9.57793 -9.23463 -9.08801 -8.48598 -8.09386 -6.10639 -4.18518 0.41788 0.71426 1.27519 2.65751 3.16537 3.28394 3.34513 3.35665 3.74736 3.92816 4.36553 4.45297 4.58708 4.90927 5.16797 5.21717 5.24893 5.28881 5.50099 5.74740 6.04436 6.16719 6.29387 6.42402 6.59826 6.69074 6.85344 7.05437 7.30523 7.57626 7.76060 7.93318 8.27217 8.74437 8.85344 9.48018 10.95467 Molecular weight = 289.08amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.004676 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.193449 B = 5986.316842 C = 6991.124952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.053 3.947 10 H 0.038 0.962 11 C -0.117 4.117 12 C -0.116 4.116 13 C 0.059 3.941 14 N -0.435 5.435 15 C 0.258 3.742 16 N -0.304 5.304 17 N -0.188 5.188 18 C -0.115 4.115 19 C 0.374 3.626 20 F -0.180 7.180 21 F -0.191 7.191 22 S 0.087 5.913 23 C 0.065 3.935 24 H 0.265 0.735 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.125 0.875 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 -12.786 -5.168 15.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.078 0.922 9 C 0.034 3.966 10 H 0.056 0.944 11 C -0.155 4.155 12 C -0.154 4.154 13 C -0.067 4.067 14 N -0.155 5.155 15 C -0.112 4.112 16 N -0.149 5.149 17 N -0.026 5.026 18 C -0.399 4.399 19 C 0.316 3.684 20 F -0.162 7.162 21 F -0.172 7.172 22 S 0.327 5.673 23 C -0.061 4.061 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.157 0.843 32 H 0.143 0.857 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.241 -12.449 -4.799 14.730 hybrid contribution 0.728 0.971 -0.614 1.360 sum -5.513 -11.479 -5.413 13.837 Atomic orbital electron populations 1.69808 1.05935 1.27137 1.49264 1.25022 0.94892 0.99390 0.94491 0.86603 0.79605 0.82869 0.78663 1.20157 1.21177 1.20173 1.21041 0.92982 0.89960 1.51921 0.92179 1.18778 0.92084 0.92434 0.93307 0.94379 1.21763 0.98681 0.93993 1.01025 1.21666 0.97849 0.99363 0.96509 1.22418 0.93446 0.90712 1.00116 1.59093 1.17456 1.09438 1.29478 1.28783 0.99248 0.90884 0.92250 1.71866 1.15517 1.26055 1.01468 1.70750 1.01497 1.14485 1.15863 1.29872 1.09319 0.97252 1.03444 1.19390 0.96379 0.74000 0.78620 1.93062 1.96139 1.83605 1.43347 1.93046 1.97613 1.30420 1.96134 1.85565 1.35673 1.20123 1.25968 1.22994 0.98066 0.85113 0.99915 0.92506 0.92305 0.93083 0.91081 0.91594 0.92963 0.90992 0.84301 0.85690 0.94504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.75 11.34 55.43 0.63 -24.12 16 2 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.52 -13.60 8.56 -34.44 -0.29 -13.89 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.05 1.25 2.26 -91.69 -0.21 1.04 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.12 -2.20 5.22 -26.61 -0.14 -2.33 16 12 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 13 C 0.06 0.93 5.36 -3.83 -0.02 0.91 16 14 N -0.44 -8.43 4.72 -173.48 -0.82 -9.24 16 15 C 0.26 4.84 7.04 -87.14 -0.61 4.23 16 16 N -0.30 -6.36 10.59 31.00 0.33 -6.03 16 17 N -0.19 -3.54 11.48 33.57 0.39 -3.15 16 18 C -0.12 -1.73 7.36 -13.34 -0.10 -1.83 16 19 C 0.37 4.18 5.86 36.01 0.21 4.39 16 20 F -0.18 -2.36 17.27 2.25 0.04 -2.32 16 21 F -0.19 -2.13 17.13 2.25 0.04 -2.09 16 22 S 0.09 1.25 22.56 -107.50 -2.43 -1.18 16 23 C 0.06 1.50 3.92 -3.83 -0.02 1.48 16 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.95 7.46 -51.93 -0.39 0.56 16 31 H 0.14 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.13 3.35 5.88 -51.93 -0.31 3.05 16 33 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 LS Contribution 297.47 15.07 4.48 4.48 Total: -1.00 -29.14 297.47 -7.41 -36.55 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -3.62 Total: -2.45 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -1.43 Total: -6.28 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.52 Total: -42.55 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.08 Total: -4.41 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.43 Total: -1.18 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.14 -7.41 -36.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596327770.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.527 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds