Wall clock time and date at job start Tue Mar 31 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00459 * 2 1 4 4 H 1.48500 * 109.46825 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.46825 * 299.99792 * 3 2 1 6 6 H 1.48498 * 109.46984 * 59.99462 * 3 2 1 7 7 C 1.38818 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99797 * 159.14994 * 7 2 1 9 9 N 1.36941 * 119.99710 * 339.14244 * 7 2 1 10 10 C 1.46498 * 120.00444 * 318.55794 * 9 7 2 11 11 C 1.50701 * 109.47203 * 263.75883 * 10 9 7 12 12 O 1.34627 * 125.85262 * 275.00622 * 11 10 9 13 13 C 1.34267 * 109.53159 * 180.15506 * 12 11 10 14 14 C 1.34482 * 108.57995 * 359.56034 * 13 12 11 15 15 C 1.35023 * 125.84917 * 94.67400 * 11 10 9 16 16 S 1.76201 * 126.64376 * 0.02562 * 15 11 10 17 17 C 1.46499 * 119.99699 * 138.56056 * 9 7 2 18 18 C 1.50707 * 109.46889 * 270.00217 * 17 9 7 19 19 C 1.38233 * 119.99629 * 269.72414 * 18 17 9 20 20 C 1.38239 * 119.99860 * 179.77000 * 19 18 17 21 21 C 1.38229 * 119.99648 * 0.48208 * 20 19 18 22 22 C 1.38238 * 120.00427 * 359.79590 * 21 20 19 23 23 C 1.38230 * 119.99748 * 359.95027 * 22 21 20 24 24 H 0.97000 * 119.99541 * 5.03905 * 1 2 3 25 25 H 1.09001 * 109.46908 * 143.75421 * 10 9 7 26 26 H 1.08998 * 109.46548 * 23.75955 * 10 9 7 27 27 H 1.08003 * 125.70517 * 179.82892 * 13 12 11 28 28 H 1.08001 * 126.56330 * 180.26962 * 14 13 12 29 29 H 1.34502 * 102.99871 * 269.97311 * 16 15 11 30 30 H 1.09007 * 109.47385 * 29.99702 * 17 9 7 31 31 H 1.08992 * 109.47255 * 150.00140 * 17 9 7 32 32 H 1.08006 * 120.00216 * 359.97438 * 19 18 17 33 33 H 1.08002 * 119.99970 * 180.25526 * 20 19 18 34 34 H 1.08008 * 119.99729 * 179.77215 * 21 20 19 35 35 H 1.07999 * 119.99796 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.00129 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0372 -1.2330 -0.3324 9 7 1.3927 -2.3491 0.4233 10 6 0.5247 -2.3215 1.6031 11 6 1.3089 -2.7571 2.8140 12 8 1.5108 -4.0287 3.2072 13 6 2.2506 -4.0401 4.3276 14 6 2.5412 -2.7704 4.6622 15 6 1.9348 -1.9390 3.6871 16 16 1.9875 -0.1789 3.6264 17 6 1.6002 -3.6036 -0.3043 18 6 0.5552 -3.7380 -1.3819 19 6 -0.6429 -4.3705 -1.1076 20 6 -1.6034 -4.4896 -2.0947 21 6 -1.3616 -3.9850 -3.3587 22 6 -0.1611 -3.3576 -3.6346 23 6 0.7971 -3.2338 -2.6461 24 1 -0.4849 0.8368 -0.0738 25 1 -0.3159 -2.9987 1.4516 26 1 0.1522 -1.3087 1.7565 27 1 2.5639 -4.9217 4.8672 28 1 3.1248 -2.4462 5.5111 29 1 3.0860 0.0657 2.8898 30 1 2.5914 -3.6010 -0.7577 31 1 1.5191 -4.4422 0.3871 32 1 -0.8300 -4.7687 -0.1213 33 1 -2.5412 -4.9801 -1.8793 34 1 -2.1106 -4.0813 -4.1310 35 1 0.0278 -2.9637 -4.6223 36 1 1.7349 -2.7433 -2.8614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237190854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:37 Heat of formation + Delta-G solvation = 64.727050 kcal Electronic energy + Delta-G solvation = -20725.792171 eV Core-core repulsion = 17689.674241 eV Total energy + Delta-G solvation = -3036.117930 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.088 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.91206 -38.53049 -35.76905 -32.48919 -32.00530 -30.93727 -30.18536 -29.13210 -25.67424 -25.52853 -22.16736 -21.84114 -21.43136 -20.47083 -19.91059 -17.49117 -16.88471 -16.15663 -15.76358 -15.48924 -14.98126 -14.43091 -14.40666 -14.11046 -13.68613 -13.35554 -12.89383 -12.76307 -12.71253 -12.34448 -12.05183 -11.81582 -11.54577 -10.96921 -10.85337 -10.79657 -10.61789 -10.55235 -10.23398 -10.19458 -10.06790 -9.16985 -8.63859 -8.20582 -8.03876 -7.85874 -7.28806 -6.77338 -6.01867 -3.55847 2.02672 2.11882 2.18556 2.43502 2.90912 3.25544 3.32904 3.36074 3.57615 3.84202 4.32585 4.52733 5.17048 5.35551 5.46149 5.50138 5.53698 5.58814 5.67382 5.83184 5.86342 6.09939 6.19797 6.22265 6.33706 6.47310 6.54346 6.71770 6.73969 6.77758 6.87742 7.12845 7.16818 7.25128 7.47573 7.66024 7.71202 7.74403 8.35880 8.95632 9.56600 10.17273 11.04242 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.007316 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.233188 B = 3826.196360 C = 5329.421178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.049 3.951 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.286 4.286 8 H 0.058 0.942 9 N -0.554 5.554 10 C 0.213 3.787 11 C 0.070 3.930 12 O -0.179 6.179 13 C -0.072 4.072 14 C -0.180 4.180 15 C -0.210 4.210 16 S -0.086 6.086 17 C 0.173 3.827 18 C -0.069 4.069 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.140 4.140 22 C -0.125 4.125 23 C -0.093 4.093 24 H 0.262 0.738 25 H 0.048 0.952 26 H 0.135 0.865 27 H 0.194 0.806 28 H 0.144 0.856 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 -7.190 2.413 7.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.156 4.156 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.415 4.415 8 H 0.076 0.924 9 N -0.272 5.272 10 C 0.085 3.915 11 C 0.012 3.988 12 O -0.074 6.074 13 C -0.140 4.140 14 C -0.202 4.202 15 C -0.324 4.324 16 S 0.069 5.931 17 C 0.048 3.952 18 C -0.071 4.071 19 C -0.134 4.134 20 C -0.144 4.144 21 C -0.158 4.158 22 C -0.143 4.143 23 C -0.112 4.112 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.152 0.848 27 H 0.211 0.789 28 H 0.162 0.838 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.227 -6.379 2.409 6.823 hybrid contribution 1.428 0.224 -0.418 1.505 sum 1.655 -6.155 1.991 6.677 Atomic orbital electron populations 1.69892 1.05518 1.26548 1.48318 1.25168 0.94845 0.98357 0.97230 0.86688 0.79924 0.84783 0.78278 1.20239 1.21115 1.20036 1.18893 0.94037 0.84812 1.43727 0.92410 1.43717 1.55271 1.05240 1.22960 1.19973 0.89249 1.03168 0.79085 1.25758 0.97465 0.79227 0.96395 1.84193 1.56478 1.30395 1.36329 1.23740 1.01274 0.98950 0.90050 1.21884 1.04303 0.92560 1.01464 1.21207 1.12086 0.96869 1.02283 1.85187 1.39898 0.98896 1.69101 1.20121 0.94729 0.89421 0.90943 1.20821 0.96909 0.94331 0.95083 1.20921 0.93931 1.00240 0.98317 1.20938 0.98614 1.01103 0.93789 1.20876 0.97238 1.00972 0.96756 1.21003 0.94409 0.99982 0.98928 1.20927 0.99277 0.98187 0.92837 0.92814 0.93401 0.84760 0.78915 0.83821 0.96994 0.92758 0.93477 0.87220 0.87312 0.87434 0.87311 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.11 11.83 55.49 0.66 -22.46 16 2 C 0.05 1.25 4.86 -17.43 -0.08 1.16 16 3 Si 0.88 20.65 29.61 -169.99 -5.03 15.61 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.29 -7.25 9.41 -15.06 -0.14 -7.39 16 8 H 0.06 1.52 7.91 -52.49 -0.42 1.10 16 9 N -0.55 -12.87 2.36 -175.98 -0.42 -13.28 16 10 C 0.21 4.78 5.59 -5.19 -0.03 4.76 16 11 C 0.07 1.44 6.92 -35.45 -0.25 1.20 16 12 O -0.18 -3.33 10.66 4.92 0.05 -3.28 16 13 C -0.07 -1.11 12.07 29.40 0.36 -0.75 16 14 C -0.18 -3.03 10.90 -39.56 -0.43 -3.46 16 15 C -0.21 -4.23 6.43 -39.38 -0.25 -4.48 16 16 S -0.09 -1.76 25.54 -107.50 -2.75 -4.51 16 17 C 0.17 3.55 5.81 -5.19 -0.03 3.52 16 18 C -0.07 -1.37 5.46 -104.62 -0.57 -1.94 16 19 C -0.12 -2.13 9.70 -39.58 -0.38 -2.51 16 20 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 21 C -0.14 -2.32 10.05 -39.58 -0.40 -2.72 16 22 C -0.13 -2.20 10.05 -39.58 -0.40 -2.59 16 23 C -0.09 -1.82 9.70 -39.59 -0.38 -2.21 16 24 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 25 H 0.05 1.04 8.12 -51.93 -0.42 0.62 16 26 H 0.14 3.34 5.42 -51.93 -0.28 3.06 16 27 H 0.19 2.06 8.06 -52.48 -0.42 1.64 16 28 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.07 1.42 9.07 97.61 0.89 2.30 16 30 H 0.05 1.10 7.98 -51.92 -0.41 0.68 16 31 H 0.05 0.91 8.01 -51.93 -0.42 0.49 16 32 H 0.11 1.89 8.06 -52.48 -0.42 1.47 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 35 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.11 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -27.70 329.58 -9.07 -36.77 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -3.16 Total: 6.13 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -3.39 Total: -19.95 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.24 Total: -35.74 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: 0.05 Total: -3.28 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.61 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.75 Total: -4.51 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.70 -9.07 -36.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237190854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.493 kcal (2) G-P(sol) polarization free energy of solvation -27.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds