Wall clock time and date at job start Tue Mar 31 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00459 * 2 1 4 4 H 1.48500 * 109.46825 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.46825 * 299.99792 * 3 2 1 6 6 H 1.48498 * 109.46984 * 59.99462 * 3 2 1 7 7 C 1.38818 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99797 * 159.14994 * 7 2 1 9 9 N 1.36941 * 119.99710 * 339.14244 * 7 2 1 10 10 C 1.46498 * 120.00444 * 318.55794 * 9 7 2 11 11 C 1.50701 * 109.47203 * 263.75883 * 10 9 7 12 12 O 1.34627 * 125.85262 * 275.00622 * 11 10 9 13 13 C 1.34267 * 109.53159 * 180.15506 * 12 11 10 14 14 C 1.34482 * 108.57995 * 359.56034 * 13 12 11 15 15 C 1.35023 * 125.84917 * 94.67400 * 11 10 9 16 16 S 1.76201 * 126.64376 * 0.02562 * 15 11 10 17 17 C 1.46499 * 119.99699 * 138.56056 * 9 7 2 18 18 C 1.50707 * 109.46889 * 270.00217 * 17 9 7 19 19 C 1.38233 * 119.99629 * 269.72414 * 18 17 9 20 20 C 1.38239 * 119.99860 * 179.77000 * 19 18 17 21 21 C 1.38229 * 119.99648 * 0.48208 * 20 19 18 22 22 C 1.38238 * 120.00427 * 359.79590 * 21 20 19 23 23 C 1.38230 * 119.99748 * 359.95027 * 22 21 20 24 24 H 0.97000 * 119.99541 * 5.03905 * 1 2 3 25 25 H 1.09001 * 109.46908 * 143.75421 * 10 9 7 26 26 H 1.08998 * 109.46548 * 23.75955 * 10 9 7 27 27 H 1.08003 * 125.70517 * 179.82892 * 13 12 11 28 28 H 1.08001 * 126.56330 * 180.26962 * 14 13 12 29 29 H 1.34502 * 102.99871 * 269.97311 * 16 15 11 30 30 H 1.09007 * 109.47385 * 29.99702 * 17 9 7 31 31 H 1.08992 * 109.47255 * 150.00140 * 17 9 7 32 32 H 1.08006 * 120.00216 * 359.97438 * 19 18 17 33 33 H 1.08002 * 119.99970 * 180.25526 * 20 19 18 34 34 H 1.08008 * 119.99729 * 179.77215 * 21 20 19 35 35 H 1.07999 * 119.99796 * 179.97438 * 22 21 20 36 36 H 1.07998 * 120.00129 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3461 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0372 -1.2330 -0.3324 9 7 1.3927 -2.3491 0.4233 10 6 0.5247 -2.3215 1.6031 11 6 1.3089 -2.7571 2.8140 12 8 1.5108 -4.0287 3.2072 13 6 2.2506 -4.0401 4.3276 14 6 2.5412 -2.7704 4.6622 15 6 1.9348 -1.9390 3.6871 16 16 1.9875 -0.1789 3.6264 17 6 1.6002 -3.6036 -0.3043 18 6 0.5552 -3.7380 -1.3819 19 6 -0.6429 -4.3705 -1.1076 20 6 -1.6034 -4.4896 -2.0947 21 6 -1.3616 -3.9850 -3.3587 22 6 -0.1611 -3.3576 -3.6346 23 6 0.7971 -3.2338 -2.6461 24 1 -0.4849 0.8368 -0.0738 25 1 -0.3159 -2.9987 1.4516 26 1 0.1522 -1.3087 1.7565 27 1 2.5639 -4.9217 4.8672 28 1 3.1248 -2.4462 5.5111 29 1 3.0860 0.0657 2.8898 30 1 2.5914 -3.6010 -0.7577 31 1 1.5191 -4.4422 0.3871 32 1 -0.8300 -4.7687 -0.1213 33 1 -2.5412 -4.9801 -1.8793 34 1 -2.1106 -4.0813 -4.1310 35 1 0.0278 -2.9637 -4.6223 36 1 1.7349 -2.7433 -2.8614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237190854.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:36 Heat of formation + Delta-G solvation = 52.221637 kcal Electronic energy + Delta-G solvation = -20726.334447 eV Core-core repulsion = 17689.674241 eV Total energy + Delta-G solvation = -3036.660206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 289.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.34975 -39.95834 -37.48784 -33.93248 -33.81506 -32.48333 -31.57555 -30.69706 -27.34153 -27.20653 -23.85694 -23.23601 -22.86965 -21.90444 -21.46421 -19.11487 -18.56757 -17.59994 -17.28583 -16.98516 -16.78022 -15.98283 -15.90957 -15.71499 -15.27868 -15.06754 -14.42489 -14.23323 -14.10111 -13.70796 -13.52401 -13.42125 -13.22415 -12.82282 -12.60814 -12.50554 -12.29053 -12.19877 -11.99614 -11.75874 -11.63389 -10.62308 -10.58930 -9.60418 -9.47427 -9.31079 -8.91723 -8.61535 -7.97466 -5.52738 0.48771 0.70279 0.72623 0.99245 1.34423 1.40002 1.43536 1.47296 2.03774 2.34871 2.43203 3.06868 3.25172 3.81445 3.99824 4.11030 4.12741 4.24029 4.33707 4.39969 4.46216 4.57539 4.79340 4.83121 4.91612 4.94833 5.01545 5.18357 5.33847 5.35982 5.42393 5.56330 5.65495 5.76294 5.77833 6.01624 6.20388 6.35031 6.44195 7.06653 7.68357 8.27877 9.07063 Molecular weight = 289.09amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.007316 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.233188 B = 3826.196360 C = 5329.421178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.024 3.976 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.283 4.283 8 H 0.042 0.958 9 N -0.566 5.566 10 C 0.222 3.778 11 C 0.044 3.956 12 O -0.184 6.184 13 C -0.045 4.045 14 C -0.195 4.195 15 C -0.222 4.222 16 S -0.086 6.086 17 C 0.177 3.823 18 C -0.089 4.089 19 C -0.128 4.128 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.117 4.117 24 H 0.258 0.742 25 H 0.046 0.954 26 H 0.109 0.891 27 H 0.248 0.752 28 H 0.171 0.829 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.234 -8.837 2.939 9.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.178 4.178 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.413 4.413 8 H 0.060 0.940 9 N -0.284 5.284 10 C 0.095 3.905 11 C -0.014 4.014 12 O -0.080 6.080 13 C -0.113 4.113 14 C -0.216 4.216 15 C -0.337 4.337 16 S 0.069 5.931 17 C 0.053 3.947 18 C -0.092 4.092 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.136 4.136 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.126 0.874 27 H 0.264 0.736 28 H 0.188 0.812 29 H 0.015 0.985 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.157 0.843 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.143 -8.038 2.936 8.558 hybrid contribution 1.548 0.591 -0.535 1.741 sum 1.405 -7.447 2.400 7.949 Atomic orbital electron populations 1.69965 1.06244 1.26528 1.50045 1.25442 0.95117 0.99717 0.97561 0.86157 0.79113 0.82978 0.78044 1.20375 1.21169 1.20031 1.18832 0.93402 0.85963 1.43081 0.94029 1.43770 1.55281 1.05317 1.24056 1.19572 0.89417 1.01786 0.79764 1.25166 0.98971 0.80388 0.96829 1.84171 1.57074 1.29111 1.37607 1.24769 0.98070 1.00387 0.88027 1.22191 1.05050 0.92476 1.01892 1.21512 1.12301 0.96565 1.03333 1.85121 1.39336 1.00121 1.68514 1.20074 0.94810 0.88590 0.91268 1.20793 0.97450 0.95818 0.95108 1.21108 0.93854 1.00367 0.99305 1.21334 0.99263 1.00449 0.93456 1.21310 0.97331 0.99437 0.97515 1.21310 0.94388 0.99793 0.99435 1.21015 0.99773 0.99158 0.93646 0.93205 0.93528 0.87362 0.73617 0.81176 0.98463 0.93402 0.92498 0.86522 0.84266 0.84054 0.85137 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.53 11.83 21.65 0.26 -48.27 16 2 C 0.02 1.25 4.86 84.86 0.41 1.66 16 3 Si 0.91 43.02 29.61 68.60 2.03 45.05 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 7 C -0.28 -14.76 9.41 84.03 0.79 -13.97 16 8 H 0.04 2.27 7.91 -2.91 -0.02 2.25 16 9 N -0.57 -26.81 2.36 -710.67 -1.68 -28.49 16 10 C 0.22 10.15 5.59 85.63 0.48 10.62 16 11 C 0.04 1.81 6.92 24.95 0.17 1.98 16 12 O -0.18 -6.50 10.66 -5.32 -0.06 -6.55 16 13 C -0.05 -1.22 12.07 66.96 0.81 -0.41 16 14 C -0.19 -6.02 10.90 22.28 0.24 -5.77 16 15 C -0.22 -8.79 6.43 22.40 0.14 -8.65 16 16 S -0.09 -3.55 25.54 -56.49 -1.44 -4.99 16 17 C 0.18 7.40 5.81 85.64 0.50 7.90 16 18 C -0.09 -3.58 5.46 -19.86 -0.11 -3.69 16 19 C -0.13 -4.61 9.70 22.27 0.22 -4.39 16 20 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 21 C -0.14 -4.20 10.05 22.27 0.22 -3.97 16 22 C -0.13 -4.44 10.05 22.27 0.22 -4.21 16 23 C -0.12 -4.61 9.70 22.27 0.22 -4.39 16 24 H 0.26 13.78 8.32 -92.71 -0.77 13.01 16 25 H 0.05 2.07 8.12 -2.39 -0.02 2.05 16 26 H 0.11 5.55 5.42 -2.39 -0.01 5.54 16 27 H 0.25 3.81 8.06 -2.91 -0.02 3.79 16 28 H 0.17 4.25 8.06 -2.91 -0.02 4.23 16 29 H 0.05 2.24 9.07 73.35 0.67 2.91 16 30 H 0.05 2.00 7.98 -2.38 -0.02 1.98 16 31 H 0.06 2.20 8.01 -2.39 -0.02 2.18 16 32 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 34 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 35 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 36 H 0.10 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -60.58 329.58 5.41 -55.18 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 1.76 Total: 19.13 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 4.54 Total: -31.06 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -1.42 Total: -76.76 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.06 Total: -6.55 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.44 Total: -4.99 kcal Total: -60.58 5.41 -55.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237190854.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.397 kcal (2) G-P(sol) polarization free energy of solvation -60.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds