Wall clock time and date at job start Tue Mar 31 2020 06:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47292 * 2 1 4 4 C 1.50700 * 109.47125 * 119.99816 * 2 1 3 5 5 H 1.08004 * 119.99888 * 119.99535 * 4 2 1 6 6 C 1.37875 * 120.00634 * 299.99991 * 4 2 1 7 7 N 1.31517 * 119.99590 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00590 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47078 * 59.99693 * 8 6 4 10 10 H 1.48495 * 109.47456 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46918 * 299.99974 * 8 6 4 12 12 O 1.45198 * 109.47190 * 239.99854 * 2 1 3 13 13 C 1.34231 * 116.99895 * 90.00182 * 12 2 1 14 14 O 1.20823 * 119.99785 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99685 * 180.02562 * 13 12 2 16 16 H 1.09003 * 109.47482 * 60.00208 * 15 13 12 17 17 C 1.53001 * 109.47244 * 299.99664 * 15 13 12 18 18 O 1.42906 * 109.46923 * 179.97438 * 15 13 12 19 19 C 1.35751 * 117.00019 * 204.61312 * 18 15 13 20 20 C 1.38966 * 119.90954 * 354.91524 * 19 18 15 21 21 C 1.37723 * 120.09661 * 180.32168 * 20 19 18 22 22 C 1.39753 * 119.90696 * 359.42784 * 21 20 19 23 23 C 1.43204 * 120.09708 * 180.29705 * 22 21 20 24 24 N 9.79967 * 123.75578 * 209.58562 * 12 1 2 25 25 C 1.39762 * 119.80934 * 0.27125 * 22 21 20 26 26 C 1.37732 * 119.90070 * 0.02562 * 25 22 21 27 27 H 1.09002 * 109.46902 * 300.00119 * 1 2 3 28 28 H 1.08995 * 109.47241 * 59.99472 * 1 2 3 29 29 H 1.08998 * 109.47292 * 180.02562 * 1 2 3 30 30 H 0.97003 * 120.00344 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.46745 * 300.00325 * 17 15 13 32 32 H 1.09000 * 109.46738 * 60.00575 * 17 15 13 33 33 H 1.09003 * 109.46986 * 180.02562 * 17 15 13 34 34 H 1.08007 * 119.95034 * 0.04681 * 20 19 18 35 35 H 1.08006 * 120.04700 * 179.70114 * 21 20 19 36 36 H 1.08001 * 120.04567 * 180.02562 * 25 22 21 37 37 H 1.08001 * 119.94701 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9436 0.8302 2.6035 8 14 2.3213 -1.1203 4.0080 9 1 3.8063 -1.1210 4.0081 10 1 1.8260 -0.4206 5.2205 11 1 1.8257 -2.5202 4.0077 12 8 2.0139 -0.6845 -1.1855 13 6 2.2171 0.0640 -2.2811 14 8 1.9973 1.2517 -2.2505 15 6 2.7182 -0.5773 -3.5494 16 1 2.0087 -1.3370 -3.8774 17 6 4.0782 -1.2281 -3.2890 18 8 2.8529 0.4184 -4.5656 19 6 2.7871 -0.0034 -5.8543 20 6 2.7028 -1.3617 -6.1354 21 6 2.6426 -1.7942 -7.4415 22 6 2.6543 -0.8643 -8.4847 23 6 2.5855 -1.3092 -9.8441 24 7 2.5343 -1.6614 -10.9225 25 6 2.7329 0.5012 -8.1974 26 6 2.7990 0.9247 -6.8884 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 0.7095 1.1619 3.4845 31 1 4.7877 -0.4684 -2.9611 32 1 3.9750 -1.9877 -2.5141 33 1 4.4409 -1.6916 -4.2066 34 1 2.6890 -2.0795 -5.3284 35 1 2.5820 -2.8503 -7.6592 36 1 2.7418 1.2232 -9.0006 37 1 2.8593 1.9798 -6.6655 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709363.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:45 Heat of formation + Delta-G solvation = -86.944248 kcal Electronic energy + Delta-G solvation = -21718.832162 eV Core-core repulsion = 18233.384400 eV Total energy + Delta-G solvation = -3485.447762 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.91940 -40.93259 -39.09724 -37.60066 -37.13325 -35.37280 -33.50167 -32.06471 -31.54971 -31.10603 -27.45868 -26.31220 -24.67669 -24.13155 -23.05728 -21.38286 -19.96297 -19.36979 -18.98910 -18.30780 -17.70028 -17.09786 -16.74890 -16.22717 -16.12517 -15.61548 -15.18504 -14.98428 -14.92010 -14.55528 -14.38245 -14.22729 -13.86703 -13.79727 -13.55509 -13.23782 -13.14743 -13.05551 -13.01787 -12.79944 -12.76035 -12.38142 -12.17046 -12.09759 -11.83063 -11.61681 -11.25420 -11.00654 -10.58481 -10.09483 -9.31916 -8.27421 -6.44505 -0.18406 0.32565 1.16681 1.27433 1.46357 1.48416 1.57319 1.65935 1.93109 2.33876 2.53488 2.87783 2.92588 3.03807 3.53408 3.73703 3.81127 3.83237 3.92007 4.14199 4.41605 4.51150 4.54938 4.67270 4.72549 4.78016 4.82916 4.99852 5.03566 5.12384 5.18896 5.23426 5.33550 5.49136 5.57065 5.62075 5.90091 6.04448 6.20986 6.49640 6.60153 6.88005 7.26802 8.80022 Molecular weight = 289.11amu Principal moments of inertia in cm(-1) A = 0.042459 B = 0.002807 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.294502 B = 9970.912834 C =10197.414160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.219 3.781 3 H 0.006 0.994 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.984 3.016 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.262 1.262 12 O -0.349 6.349 13 C 0.448 3.552 14 O -0.541 6.541 15 C 0.101 3.899 16 H 0.144 0.856 17 C -0.169 4.169 18 O -0.308 6.308 19 C 0.148 3.852 20 C -0.213 4.213 21 C -0.015 4.015 22 C -0.082 4.082 23 C 0.287 3.713 24 N -0.473 5.473 25 C -0.018 4.018 26 C -0.160 4.160 27 H 0.080 0.920 28 H 0.023 0.977 29 H 0.050 0.950 30 H 0.271 0.729 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 -6.070 -16.647 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.166 3.834 3 H 0.024 0.976 4 C -0.583 4.583 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.187 1.187 12 O -0.265 6.265 13 C 0.291 3.709 14 O -0.431 6.431 15 C 0.044 3.956 16 H 0.161 0.839 17 C -0.225 4.225 18 O -0.221 6.221 19 C 0.101 3.899 20 C -0.231 4.231 21 C -0.035 4.035 22 C -0.086 4.086 23 C -0.027 4.027 24 N -0.150 5.150 25 C -0.038 4.038 26 C -0.178 4.178 27 H 0.099 0.901 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.180 0.820 35 H 0.179 0.821 36 H 0.178 0.822 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.537 -5.948 -18.033 19.523 hybrid contribution -0.054 0.408 1.437 1.495 sum 4.484 -5.540 -16.596 18.062 Atomic orbital electron populations 1.22008 0.96655 1.00703 1.00860 1.20401 0.92071 0.92120 0.78845 0.97594 1.21262 1.33473 1.14021 0.89565 0.90814 1.25849 0.94744 0.95668 1.02240 1.70018 1.36599 1.23677 1.25297 0.85218 0.78813 0.78647 0.76661 1.19232 1.20639 1.18655 1.86439 1.76081 1.43119 1.20859 1.23901 0.74437 0.85807 0.86758 1.90628 1.48952 1.18576 1.84919 1.21891 1.02064 0.89213 0.82411 0.83931 1.22349 0.92700 1.01697 1.05799 1.86143 1.86360 1.36597 1.13025 1.19666 0.93226 0.94064 0.82916 1.21481 1.08697 0.94062 0.98880 1.21184 0.91896 1.00485 0.89939 1.16005 1.13404 0.94419 0.84771 1.25757 0.91974 0.92428 0.92548 1.81278 1.11518 1.09221 1.12968 1.21130 0.92623 0.93922 0.96121 1.20532 1.06741 1.00337 0.90201 0.90108 0.95819 0.93057 0.92026 0.92087 0.88452 0.87033 0.82023 0.82117 0.82192 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.18 9.33 71.98 0.67 -6.51 16 2 C 0.22 11.54 2.56 29.85 0.08 11.62 16 3 H 0.01 0.37 7.16 -2.39 -0.02 0.36 16 4 C -0.55 -29.55 8.90 25.60 0.23 -29.32 16 5 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -51.57 11.32 21.45 0.24 -51.33 16 8 Si 0.98 41.26 29.54 68.60 2.03 43.29 16 9 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 10 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 11 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 12 O -0.35 -15.42 9.77 -51.43 -0.50 -15.93 16 13 C 0.45 17.70 7.31 71.24 0.52 18.22 16 14 O -0.54 -25.97 15.72 28.40 0.45 -25.53 16 15 C 0.10 2.57 2.75 29.85 0.08 2.66 16 16 H 0.14 2.63 6.30 -2.39 -0.02 2.62 16 17 C -0.17 -3.33 9.09 71.98 0.65 -2.67 16 18 O -0.31 -8.13 9.33 -71.69 -0.67 -8.80 16 19 C 0.15 2.78 6.60 22.62 0.15 2.93 16 20 C -0.21 -2.78 8.20 22.32 0.18 -2.60 16 21 C -0.01 -0.16 9.75 22.51 0.22 0.06 16 22 C -0.08 -1.08 5.74 -21.30 -0.12 -1.20 16 23 C 0.29 4.90 15.33 88.34 1.35 6.25 16 24 N -0.47 -10.69 18.53 19.00 0.35 -10.34 16 25 C -0.02 -0.22 9.75 22.52 0.22 0.00 16 26 C -0.16 -2.56 9.97 22.32 0.22 -2.34 16 27 H 0.08 4.35 6.07 -2.39 -0.01 4.34 16 28 H 0.02 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.05 2.35 8.14 -2.39 -0.02 2.34 16 30 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.90 8.11 -2.39 -0.02 1.88 16 33 H 0.11 1.38 6.89 -2.39 -0.02 1.37 16 34 H 0.16 1.49 5.40 -2.91 -0.02 1.48 16 35 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 37 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -70.43 330.74 7.90 -62.53 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.10 Total: 7.77 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 4.91 Total: -1.67 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.59 Total: -61.67 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -0.72 Total: -50.25 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -70.43 7.90 -62.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709363.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.415 kcal (2) G-P(sol) polarization free energy of solvation -70.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds