Wall clock time and date at job start Tue Mar 31 2020 06:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 108.68013 * 2 1 4 4 C 1.45745 * 108.61935 * 118.11923 * 2 1 3 5 5 C 1.54212 * 113.00727 * 186.55859 * 4 2 1 6 6 N 1.44747 * 109.64912 * 280.47730 * 5 4 2 7 7 C 1.34777 * 119.58799 * 277.67839 * 6 5 4 8 8 O 1.21282 * 119.99831 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00080 * 179.97438 * 7 6 5 10 10 C 1.52996 * 109.47097 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47097 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00046 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99962 * 180.02562 * 11 10 9 14 14 N 1.31506 * 119.99872 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99696 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47150 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46797 * 120.00044 * 15 13 11 18 18 H 1.48498 * 109.46959 * 239.99656 * 15 13 11 19 19 C 1.46296 * 120.82472 * 97.70146 * 6 5 4 20 20 C 1.53734 * 115.17968 * 317.05482 * 19 6 5 21 21 S 1.79959 * 110.87531 * 316.88442 * 20 19 6 22 22 O 1.42100 * 108.54132 * 198.97730 * 21 20 19 23 23 O 1.42092 * 108.54152 * 329.91532 * 21 20 19 24 24 H 1.08999 * 109.47184 * 178.18911 * 1 2 3 25 25 H 1.09008 * 109.47243 * 298.18486 * 1 2 3 26 26 H 1.09002 * 109.47489 * 58.18826 * 1 2 3 27 27 H 1.08998 * 108.77661 * 307.47288 * 4 2 1 28 28 H 1.09000 * 108.77636 * 65.64978 * 4 2 1 29 29 H 1.09010 * 109.43998 * 40.53243 * 5 4 2 30 30 H 1.09006 * 109.44159 * 160.41873 * 5 4 2 31 31 H 1.09001 * 109.46826 * 300.00434 * 9 7 6 32 32 H 1.09005 * 109.46887 * 60.00245 * 9 7 6 33 33 H 1.08995 * 109.47269 * 300.00034 * 10 9 7 34 34 H 1.09005 * 109.47001 * 60.00377 * 10 9 7 35 35 H 0.97009 * 119.99700 * 180.02562 * 14 13 11 36 36 H 1.08996 * 108.33901 * 195.57832 * 19 6 5 37 37 H 1.08998 * 108.34273 * 78.52820 * 19 6 5 38 38 H 1.09003 * 109.20046 * 196.52760 * 20 19 6 39 39 H 1.09002 * 109.19802 * 77.24277 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8791 1.0326 0.0000 4 6 1.9953 -0.6510 1.2181 5 6 3.5241 -0.5650 1.4012 6 7 4.1701 -1.5631 0.5757 7 6 4.2654 -2.8326 1.0183 8 8 3.8111 -3.1326 2.1021 9 6 4.9356 -3.8794 0.1662 10 6 4.9104 -5.2238 0.8961 11 6 5.5800 -6.2707 0.0437 12 1 5.9835 -6.0038 -0.9219 13 6 5.6774 -7.5694 0.4966 14 7 5.1865 -7.8943 1.6725 15 14 6.5081 -8.8670 -0.5598 16 1 6.9739 -8.2494 -1.8274 17 1 7.6707 -9.4310 0.1720 18 1 5.5405 -9.9519 -0.8633 19 6 4.7212 -1.2112 -0.7330 20 6 3.8350 -0.2933 -1.5906 21 16 2.1138 -0.8139 -1.5187 22 8 1.4248 -0.2509 -2.6266 23 8 2.0751 -2.2204 -1.3202 24 1 -0.3633 -1.0271 -0.0325 25 1 -0.3634 0.4854 0.9059 26 1 -0.3634 0.5417 -0.8733 27 1 1.5124 -0.1798 2.0742 28 1 1.7041 -1.7009 1.1881 29 1 3.8694 0.4267 1.1085 30 1 3.7748 -0.7417 2.4473 31 1 4.4053 -3.9701 -0.7818 32 1 5.9689 -3.5878 -0.0218 33 1 5.4409 -5.1326 1.8439 34 1 3.8772 -5.5156 1.0846 35 1 5.2554 -8.8079 1.9912 36 1 4.9003 -2.1317 -1.2885 37 1 5.6801 -0.7162 -0.5795 38 1 4.1772 -0.3288 -2.6249 39 1 3.9157 0.7294 -1.2220 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324264997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:39 Heat of formation + Delta-G solvation = -139.365370 kcal Electronic energy + Delta-G solvation = -22309.704589 eV Core-core repulsion = 18957.427628 eV Total energy + Delta-G solvation = -3352.276961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.25697 -38.33345 -37.74038 -37.03667 -36.23479 -35.56329 -33.06733 -32.25828 -30.31433 -27.72933 -25.32227 -24.85584 -23.79072 -22.52869 -20.01058 -19.59806 -18.86742 -18.39222 -17.71242 -17.44629 -17.06565 -16.52625 -16.44709 -16.19967 -15.36386 -15.21371 -14.90335 -14.53418 -14.22132 -14.15003 -14.02279 -13.86303 -13.28141 -13.24778 -13.06652 -12.95828 -12.89730 -12.84032 -12.59006 -12.47788 -12.35054 -12.05676 -11.91062 -11.68295 -11.54578 -11.27687 -11.05660 -10.65796 -10.56741 -9.74911 -8.17292 -6.31049 -0.96770 1.41545 1.43872 1.56948 1.66972 1.78253 2.03539 2.43594 2.71681 2.89759 3.15678 3.44001 3.46684 3.76113 3.82727 3.92649 4.11509 4.26816 4.35143 4.42618 4.46578 4.55321 4.60284 4.60946 4.67867 4.76522 4.86253 4.95758 5.08287 5.10870 5.20309 5.49177 5.64521 5.67907 5.86006 6.18890 6.26347 6.86974 7.25696 7.38868 8.95914 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.024960 B = 0.004417 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.507162 B = 6337.326931 C = 6673.447081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.540 4.540 3 H 0.186 0.814 4 C -0.124 4.124 5 C 0.091 3.909 6 N -0.620 5.620 7 C 0.522 3.478 8 O -0.576 6.576 9 C -0.126 4.126 10 C 0.043 3.957 11 C -0.542 4.542 12 H 0.075 0.925 13 C -0.007 4.007 14 N -0.938 5.938 15 Si 0.974 3.026 16 H -0.252 1.252 17 H -0.277 1.277 18 H -0.282 1.282 19 C 0.108 3.892 20 C -0.609 4.609 21 S 2.393 3.607 22 O -0.979 6.979 23 O -0.982 6.982 24 H 0.046 0.954 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.041 0.959 29 H 0.141 0.859 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.109 0.891 33 H -0.013 1.013 34 H -0.024 1.024 35 H 0.263 0.737 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.177 0.823 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.630 25.633 -6.714 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.651 4.651 3 H 0.204 0.796 4 C -0.164 4.164 5 C -0.031 4.031 6 N -0.354 5.354 7 C 0.313 3.687 8 O -0.455 6.455 9 C -0.165 4.165 10 C 0.005 3.995 11 C -0.580 4.580 12 H 0.093 0.907 13 C -0.205 4.205 14 N -0.578 5.578 15 Si 0.798 3.202 16 H -0.176 1.176 17 H -0.203 1.203 18 H -0.208 1.208 19 C -0.016 4.016 20 C -0.741 4.741 21 S 2.581 3.419 22 O -0.976 6.976 23 O -0.979 6.979 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.102 0.898 27 H 0.131 0.869 28 H 0.060 0.940 29 H 0.159 0.841 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.005 0.995 34 H -0.006 1.006 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.143 0.857 38 H 0.194 0.806 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.370 24.805 -6.646 25.900 hybrid contribution 0.268 -0.890 0.441 1.029 sum -3.102 23.915 -6.205 24.901 Atomic orbital electron populations 1.21829 0.90077 1.03043 1.06098 1.28593 1.06886 1.15006 1.14591 0.79637 1.20575 0.97395 1.00828 0.97593 1.21859 0.90678 0.93444 0.97145 1.47746 1.59745 1.08582 1.19355 1.21158 0.77821 0.83598 0.86137 1.90635 1.49409 1.80852 1.24559 1.21718 1.01755 0.93733 0.99310 1.18685 0.94606 0.91598 0.94587 1.21743 1.37479 0.94527 1.04232 0.90701 1.26146 0.96315 1.01536 0.96458 1.70189 1.47288 1.19550 1.20807 0.85267 0.77872 0.78070 0.78989 1.17585 1.20261 1.20796 1.21400 0.97430 1.00766 0.81958 1.30500 1.19303 1.12841 1.11498 1.08520 0.79637 0.75947 0.77797 1.93533 1.73111 1.80469 1.50449 1.93589 1.86882 1.31055 1.86397 0.93507 0.87719 0.89814 0.86889 0.94050 0.84073 0.90366 0.88667 0.87307 0.99493 1.00583 0.92867 0.89235 0.85690 0.80578 0.79399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.91 71.98 0.64 -1.67 16 2 C -0.54 -7.41 2.48 28.37 0.07 -7.34 16 3 H 0.19 0.45 8.08 -2.40 -0.02 0.43 16 4 C -0.12 -2.36 4.51 28.78 0.13 -2.23 16 5 C 0.09 1.64 5.23 87.12 0.46 2.10 16 6 N -0.62 -15.63 2.02 -822.83 -1.67 -17.29 16 7 C 0.52 20.79 7.38 87.66 0.65 21.44 16 8 O -0.58 -28.47 15.57 -3.04 -0.05 -28.52 16 9 C -0.13 -5.41 3.98 29.85 0.12 -5.29 16 10 C 0.04 2.51 4.26 29.85 0.13 2.64 16 11 C -0.54 -32.09 9.11 25.60 0.23 -31.86 16 12 H 0.07 4.05 7.74 -2.91 -0.02 4.02 16 13 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 14 N -0.94 -61.12 13.29 21.45 0.28 -60.84 16 15 Si 0.97 45.56 29.54 68.60 2.03 47.59 16 16 H -0.25 -10.88 7.11 99.48 0.71 -10.17 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 C 0.11 1.72 5.44 86.67 0.47 2.20 16 20 C -0.61 -5.67 5.87 72.23 0.42 -5.24 16 21 S 2.39 49.11 4.56 -56.49 -0.26 48.85 16 22 O -0.98 -24.90 17.65 -127.37 -2.25 -27.14 16 23 O -0.98 -33.02 16.53 -127.37 -2.11 -35.12 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.10 1.09 8.03 -2.38 -0.02 1.07 16 26 H 0.08 1.14 7.90 -2.39 -0.02 1.12 16 27 H 0.11 1.62 7.97 -2.39 -0.02 1.61 16 28 H 0.04 1.23 7.47 -2.39 -0.02 1.22 16 29 H 0.14 0.80 7.63 -2.38 -0.02 0.78 16 30 H 0.08 1.74 7.61 -2.38 -0.02 1.72 16 31 H 0.10 3.96 7.47 -2.39 -0.02 3.94 16 32 H 0.11 3.93 8.04 -2.38 -0.02 3.91 16 33 H -0.01 -0.86 8.10 -2.39 -0.02 -0.88 16 34 H -0.02 -1.63 8.10 -2.38 -0.02 -1.65 16 35 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 36 H 0.09 1.75 5.81 -2.39 -0.01 1.74 16 37 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.18 0.92 8.14 -2.46 -0.02 0.90 16 39 H 0.19 -0.24 7.93 -2.46 -0.02 -0.26 16 Total: -1.00 -96.02 323.71 0.80 -95.22 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: 1.03 Total: 2.50 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 3.78 Total: -25.25 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -1.38 Total: -78.13 kcal Atomic # 8 Polarization: -86.38 SS G_CDS: -4.40 Total: -90.78 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 16 Polarization: 49.11 SS G_CDS: -0.26 Total: 48.85 kcal Total: -96.02 0.80 -95.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324264997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.142 kcal (2) G-P(sol) polarization free energy of solvation -96.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds