Wall clock time and date at job start Tue Mar 31 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29878 * 124.85228 * 2 1 4 4 C 1.36120 * 108.80809 * 179.97438 * 3 2 1 5 5 C 1.39616 * 133.73047 * 180.02562 * 4 3 2 6 6 C 1.36589 * 119.93704 * 179.97438 * 5 4 3 7 7 C 1.39291 * 120.49491 * 0.02562 * 6 5 4 8 8 N 1.40018 * 119.84216 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00468 * 146.67389 * 8 7 6 10 10 O 1.21584 * 119.99535 * 354.62188 * 9 8 7 11 11 N 1.34779 * 120.00227 * 174.63152 * 9 8 7 12 12 C 1.46503 * 119.99792 * 359.97438 * 11 9 8 13 13 C 1.46498 * 119.99935 * 180.27254 * 11 9 8 14 14 C 1.50700 * 109.46868 * 269.72067 * 13 11 9 15 15 H 1.08009 * 120.00358 * 0.02562 * 14 13 11 16 16 C 1.37875 * 119.99927 * 179.97438 * 14 13 11 17 17 N 1.31519 * 120.00140 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00145 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46786 * 90.00303 * 18 16 14 20 20 H 1.48505 * 109.47203 * 210.00232 * 18 16 14 21 21 H 1.48499 * 109.47122 * 330.00530 * 18 16 14 22 22 C 1.38532 * 120.31872 * 0.26883 * 7 6 5 23 23 C 1.38614 * 119.68147 * 359.46028 * 22 7 6 24 24 O 1.34290 * 124.85473 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47041 * 270.01916 * 1 2 3 26 26 H 1.09000 * 109.47024 * 30.02360 * 1 2 3 27 27 H 1.09001 * 109.47047 * 150.01663 * 1 2 3 28 28 H 1.08003 * 120.03237 * 359.96493 * 5 4 3 29 29 H 1.08007 * 119.75108 * 180.02562 * 6 5 4 30 30 H 0.97010 * 119.99839 * 326.66105 * 8 7 6 31 31 H 1.09000 * 109.46883 * 90.00291 * 12 11 9 32 32 H 1.08997 * 109.46758 * 210.00186 * 12 11 9 33 33 H 1.08994 * 109.47125 * 330.00154 * 12 11 9 34 34 H 1.08994 * 109.47105 * 29.72231 * 13 11 9 35 35 H 1.08994 * 109.47019 * 149.72812 * 13 11 9 36 36 H 0.97000 * 120.00177 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.16322 * 179.70761 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2492 1.0658 0.0000 4 6 3.5574 0.6896 0.0006 5 6 4.7637 1.3924 0.0013 6 6 5.9486 0.7128 0.0023 7 6 5.9645 -0.6800 0.0021 8 7 7.1870 -1.3627 0.0036 9 6 7.2990 -2.5429 0.6448 10 8 6.3692 -2.9677 1.3031 11 7 8.4416 -3.2522 0.5564 12 6 9.5618 -2.7405 -0.2372 13 6 8.5611 -4.5378 1.2485 14 6 9.1109 -4.3134 2.6336 15 1 9.3472 -3.3131 2.9654 16 6 9.3112 -5.3850 3.4777 17 7 9.0230 -6.6031 3.0740 18 14 9.9920 -5.1069 5.1949 19 1 8.8699 -4.8884 6.1428 20 1 10.7719 -6.2980 5.6171 21 1 10.8752 -3.9131 5.1899 22 6 4.7768 -1.3930 -0.0048 23 6 3.5685 -0.7138 -0.0001 24 8 2.2745 -1.1020 0.0005 25 1 -0.3633 0.0003 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8901 -0.5136 28 1 4.7601 2.4725 0.0009 29 1 6.8800 1.2596 0.0033 30 1 7.9533 -0.9864 -0.4570 31 1 10.2050 -2.1282 0.3949 32 1 10.1352 -3.5765 -0.6375 33 1 9.1785 -2.1361 -1.0592 34 1 7.5791 -5.0053 1.3187 35 1 9.2347 -5.1890 0.6915 36 1 9.1643 -7.3570 3.6677 37 1 4.7922 -2.4729 -0.0097 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085554792.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:49 Heat of formation + Delta-G solvation = 23.484492 kcal Electronic energy + Delta-G solvation = -22144.438715 eV Core-core repulsion = 18696.072254 eV Total energy + Delta-G solvation = -3448.366462 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.16889 -40.17104 -37.89831 -35.20422 -34.77410 -34.01190 -32.56380 -31.29040 -30.38650 -28.11906 -27.21876 -25.75372 -23.38404 -23.29854 -21.99947 -21.42736 -19.57129 -18.61045 -17.61690 -16.91421 -16.76777 -16.56737 -16.25014 -15.03398 -14.88540 -14.38393 -14.03483 -13.97767 -13.79870 -13.47426 -13.32502 -13.12050 -12.89017 -12.56843 -12.37364 -12.16932 -12.05293 -11.68719 -11.36700 -11.24666 -10.90668 -10.62151 -10.54514 -10.17784 -9.85511 -9.63815 -9.41054 -8.78237 -8.45760 -7.91925 -7.61912 -6.07050 -4.11767 0.74224 1.26352 2.38967 2.45371 3.09104 3.30280 3.36514 3.38898 3.52596 3.76583 3.92498 4.33056 4.47472 4.58623 4.89532 4.92395 5.08089 5.11083 5.22537 5.26928 5.37858 5.43021 5.47161 5.81368 5.83896 5.97890 6.03199 6.11293 6.14363 6.36442 6.45077 6.70598 6.93596 7.26374 7.41829 7.57226 7.63083 7.89849 8.18802 8.45303 8.87933 9.11663 9.53506 11.00954 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.003598 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.316975 B = 7781.274953 C = 8312.667844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.231 3.769 3 N -0.478 5.478 4 C -0.008 4.008 5 C -0.042 4.042 6 C -0.145 4.145 7 C 0.210 3.790 8 N -0.691 5.691 9 C 0.695 3.305 10 O -0.564 6.564 11 N -0.609 5.609 12 C 0.083 3.917 13 C 0.259 3.741 14 C -0.528 4.528 15 H 0.057 0.943 16 C 0.061 3.939 17 N -0.895 5.895 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.104 4.104 23 C 0.037 3.963 24 O -0.213 6.213 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.406 0.594 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.829 14.465 -10.637 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.020 3.980 3 N -0.208 5.208 4 C -0.119 4.119 5 C -0.061 4.061 6 C -0.167 4.167 7 C 0.112 3.888 8 N -0.341 5.341 9 C 0.397 3.603 10 O -0.439 6.439 11 N -0.344 5.344 12 C -0.061 4.061 13 C 0.140 3.860 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.127 4.127 23 C -0.014 4.014 24 O -0.105 6.105 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.110 0.890 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.244 0.756 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.597 14.422 -10.080 20.043 hybrid contribution 1.186 -0.461 0.865 1.539 sum -8.411 13.961 -9.215 18.723 Atomic orbital electron populations 1.20351 0.81178 1.05269 1.05004 1.26343 0.96526 0.78447 0.96711 1.70523 1.01045 1.29045 1.20204 1.19768 0.92072 0.91319 1.08790 1.19710 0.88136 0.99868 0.98409 1.20514 0.98620 0.92003 1.05562 1.17032 0.84782 0.90131 0.96858 1.43009 1.11399 1.22643 1.57059 1.15943 0.84366 0.79941 0.80064 1.90934 1.39042 1.69699 1.44276 1.47523 1.11720 1.23611 1.51594 1.21618 0.90274 1.00066 0.94143 1.19301 0.98656 0.76880 0.91167 1.21439 1.42983 0.93558 0.98722 0.92464 1.24927 0.95560 0.94959 0.98622 1.69927 1.48289 0.98465 1.36695 0.86488 0.78966 0.77570 0.84327 1.20531 1.21112 1.19944 1.19769 0.86184 1.01703 1.05012 1.19962 0.83563 0.93950 1.03909 1.84489 1.15374 1.36039 1.74575 0.88560 0.87942 0.89035 0.84497 0.84327 0.75614 0.92967 0.90702 0.93129 0.93627 0.94590 0.92662 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.05 16 2 C 0.23 3.00 8.24 -13.10 -0.11 2.89 16 3 N -0.48 -7.05 11.34 -8.67 -0.10 -7.15 16 4 C -0.01 -0.12 7.24 -84.66 -0.61 -0.73 16 5 C -0.04 -0.53 10.04 -39.66 -0.40 -0.93 16 6 C -0.15 -1.79 9.88 -39.79 -0.39 -2.18 16 7 C 0.21 3.23 6.28 -83.62 -0.52 2.71 16 8 N -0.69 -10.69 5.17 -14.18 -0.07 -10.76 16 9 C 0.70 14.45 8.01 -86.92 -0.70 13.76 16 10 O -0.56 -14.27 13.61 5.29 0.07 -14.20 16 11 N -0.61 -12.57 2.86 -188.75 -0.54 -13.11 16 12 C 0.08 1.22 10.20 59.85 0.61 1.83 16 13 C 0.26 6.66 5.21 -5.19 -0.03 6.63 16 14 C -0.53 -14.89 9.39 -34.44 -0.32 -15.22 16 15 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 18 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.10 -1.82 8.66 -39.33 -0.34 -2.16 16 23 C 0.04 0.62 7.43 -38.65 -0.29 0.33 16 24 O -0.21 -3.35 10.77 3.50 0.04 -3.31 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 29 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.41 4.70 6.63 -40.82 -0.27 4.43 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.05 7.89 -51.93 -0.41 0.64 16 33 H 0.05 0.54 6.45 -51.93 -0.33 0.21 16 34 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 35 H 0.04 0.92 7.89 -51.93 -0.41 0.51 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.15 2.94 6.42 -52.49 -0.34 2.60 16 LS Contribution 321.93 15.07 4.85 4.85 Total: -1.00 -35.90 321.93 -7.08 -42.99 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.23 Total: 0.98 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -2.82 Total: 8.53 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.03 Total: -56.72 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.11 Total: -17.51 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.90 -7.08 -42.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085554792.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.470 kcal (2) G-P(sol) polarization free energy of solvation -35.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds