Wall clock time and date at job start Tue Mar 31 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40368 * 126.64761 * 2 1 4 4 C 1.35130 * 107.11960 * 179.97438 * 3 2 1 5 5 O 1.33941 * 108.76721 * 359.73117 * 4 3 2 6 6 C 1.34913 * 109.38126 * 0.44182 * 5 4 3 7 7 C 1.46634 * 125.98393 * 179.82278 * 6 5 4 8 8 O 1.21713 * 119.99774 * 179.69008 * 7 6 5 9 9 N 1.34773 * 120.00024 * 359.69140 * 7 6 5 10 10 C 1.40079 * 119.99784 * 180.02562 * 9 7 6 11 11 C 1.40424 * 125.97668 * 0.29735 * 10 9 7 12 12 C 1.35232 * 107.86568 * 180.14604 * 11 10 9 13 13 C 1.50703 * 126.06766 * 179.84878 * 12 11 10 14 14 N 1.34973 * 107.86541 * 359.58490 * 12 11 10 15 15 C 1.46503 * 125.97339 * 180.24246 * 14 12 11 16 16 C 1.50699 * 109.46808 * 90.00128 * 15 14 12 17 17 H 1.07995 * 120.00443 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99624 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00076 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99990 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46894 * 89.99749 * 20 18 16 22 22 H 1.48496 * 109.47142 * 209.99882 * 20 18 16 23 23 H 1.48495 * 109.47030 * 330.00135 * 20 18 16 24 24 N 1.31229 * 125.97357 * 179.97438 * 10 9 7 25 25 H 1.09000 * 109.47492 * 270.03938 * 1 2 3 26 26 H 1.08998 * 109.47280 * 30.04585 * 1 2 3 27 27 H 1.09004 * 109.46788 * 150.04521 * 1 2 3 28 28 H 1.08003 * 126.44014 * 359.97438 * 3 2 1 29 29 H 1.07995 * 125.61397 * 180.02562 * 4 3 2 30 30 H 0.96998 * 120.00157 * 359.97438 * 9 7 6 31 31 H 1.07999 * 126.07071 * 359.97438 * 11 10 9 32 32 H 1.09002 * 109.47152 * 269.68932 * 13 12 11 33 33 H 1.09001 * 109.46980 * 149.69032 * 13 12 11 34 34 H 1.09004 * 109.47113 * 29.69013 * 13 12 11 35 35 H 1.08999 * 109.46899 * 210.00130 * 15 14 12 36 36 H 1.08999 * 109.46830 * 329.99997 * 15 14 12 37 37 H 0.96999 * 119.99503 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6745 0.0006 5 8 3.6006 -0.6648 0.0069 6 6 2.3221 -1.0956 0.0006 7 6 1.8846 -2.4951 0.0008 8 8 0.6969 -2.7614 0.0005 9 7 2.7975 -3.4866 0.0014 10 6 2.3794 -4.8235 0.0011 11 6 1.0486 -5.2717 -0.0058 12 6 1.0662 -6.6239 -0.0004 13 6 -0.1403 -7.5269 -0.0014 14 7 2.3561 -7.0212 0.0002 15 6 2.8295 -8.4077 0.0004 16 6 2.9925 -8.8829 -1.4204 17 1 2.7658 -8.2189 -2.2413 18 6 3.4302 -10.1659 -1.6722 19 7 3.7059 -10.9748 -0.6724 20 14 3.6316 -10.7554 -3.4333 21 1 5.0101 -10.4595 -3.8997 22 1 3.3914 -12.2194 -3.4958 23 1 2.6535 -10.0556 -4.3044 24 7 3.1630 -5.8762 0.0011 25 1 -0.3634 0.0007 1.0276 26 1 -0.3634 0.8895 -0.5145 27 1 -0.3633 -0.8904 -0.5132 28 1 2.0306 2.1595 -0.0004 29 1 4.5046 1.2917 0.0011 30 1 3.7439 -3.2744 0.0013 31 1 0.1674 -4.6474 -0.0113 32 1 -0.4318 -7.7451 1.0260 33 1 0.1024 -8.4570 -0.5155 34 1 -0.9642 -7.0319 -0.5156 35 1 3.7889 -8.4639 0.5147 36 1 2.1044 -9.0391 0.5138 37 1 4.0141 -11.8772 -0.8496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271115356.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:19 Heat of formation + Delta-G solvation = 54.762368 kcal Electronic energy + Delta-G solvation = -21964.837378 eV Core-core repulsion = 18517.827227 eV Total energy + Delta-G solvation = -3447.010151 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.92748 -40.72135 -39.14775 -35.18049 -34.14445 -33.38589 -31.58012 -31.01500 -30.43475 -27.96311 -26.61480 -26.34987 -23.89395 -22.68028 -21.76240 -20.47105 -19.80881 -19.27485 -17.81538 -16.71426 -16.60030 -16.22528 -16.09406 -15.35194 -14.92355 -14.57857 -14.27089 -13.95423 -13.72322 -13.26715 -13.23228 -13.02752 -12.72367 -12.49041 -12.35731 -12.18894 -11.98578 -11.64671 -11.43033 -11.10501 -10.84960 -10.49570 -10.26658 -10.07597 -9.94090 -9.73673 -9.55974 -8.86507 -8.65331 -7.97277 -7.49318 -6.26582 -4.34354 0.83568 2.08268 2.42353 2.62929 2.84735 3.02286 3.21520 3.27756 3.32626 3.73217 3.84431 4.29589 4.45779 4.53835 4.71001 5.07118 5.23624 5.28847 5.37385 5.53813 5.57038 5.69293 5.81184 5.90444 5.94880 6.08767 6.16079 6.20414 6.44572 6.47011 6.59046 6.79077 6.91095 7.03692 7.36921 7.59008 7.66193 7.87469 8.02237 8.09650 8.61096 8.73638 9.32175 10.80723 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027601 B = 0.003294 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.199160 B = 8498.947027 C = 8954.929592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.084 4.084 3 C -0.226 4.226 4 C -0.003 4.003 5 O -0.163 6.163 6 C -0.080 4.080 7 C 0.609 3.391 8 O -0.495 6.495 9 N -0.620 5.620 10 C 0.261 3.739 11 C -0.289 4.289 12 C 0.093 3.907 13 C -0.089 4.089 14 N -0.315 5.315 15 C 0.258 3.742 16 C -0.537 4.537 17 H 0.065 0.935 18 C 0.066 3.934 19 N -0.891 5.891 20 Si 0.906 3.094 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.272 1.272 24 N -0.316 5.316 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.156 0.844 29 H 0.210 0.790 30 H 0.415 0.585 31 H 0.160 0.840 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.067 20.729 2.449 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 C -0.245 4.245 4 C -0.072 4.072 5 O -0.059 6.059 6 C -0.132 4.132 7 C 0.395 3.605 8 O -0.370 6.370 9 N -0.266 5.266 10 C 0.009 3.991 11 C -0.320 4.320 12 C -0.039 4.039 13 C -0.147 4.147 14 N -0.097 5.097 15 C 0.140 3.860 16 C -0.576 4.576 17 H 0.083 0.917 18 C -0.138 4.138 19 N -0.529 5.529 20 Si 0.733 3.267 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.196 1.196 24 N -0.147 5.147 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.108 0.892 28 H 0.174 0.826 29 H 0.227 0.773 30 H 0.251 0.749 31 H 0.178 0.822 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.355 19.588 2.505 20.031 hybrid contribution 0.138 0.288 -0.926 0.980 sum -3.217 19.877 1.579 20.197 Atomic orbital electron populations 1.20456 0.88050 1.03769 1.03028 1.20638 0.97757 0.90782 0.99470 1.21747 0.92414 1.00146 1.10238 1.24376 1.00005 0.80578 1.02286 1.84087 1.28301 1.22767 1.70699 1.21686 0.81626 0.94222 1.15647 1.16355 0.85450 0.81361 0.77284 1.90797 1.15538 1.81455 1.49190 1.42265 1.10493 1.02296 1.71581 1.18903 0.92718 0.83838 1.03626 1.21237 0.96519 0.92913 1.21289 1.21073 0.87695 0.94345 1.00747 1.20387 0.92894 0.98847 1.02588 1.49034 1.02329 1.06432 1.51918 1.19714 0.97192 0.70075 0.98991 1.21326 1.46628 0.98240 0.91362 0.91705 1.24932 0.94568 0.96124 0.98145 1.69922 1.44385 1.07595 1.31033 0.86350 0.78825 0.77789 0.83699 1.20331 1.20864 1.19625 1.77280 1.17774 0.90594 1.29040 0.90656 0.91472 0.89225 0.82614 0.77301 0.74936 0.82234 0.91013 0.89853 0.90549 0.92947 0.92691 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 9.82 36.00 0.35 -0.62 16 2 C -0.08 -0.94 6.20 -104.43 -0.65 -1.59 16 3 C -0.23 -1.93 10.83 -39.89 -0.43 -2.36 16 4 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 5 O -0.16 -1.83 10.40 4.97 0.05 -1.78 16 6 C -0.08 -1.04 7.13 -36.80 -0.26 -1.30 16 7 C 0.61 9.64 7.75 -12.87 -0.10 9.54 16 8 O -0.49 -8.66 11.86 5.18 0.06 -8.60 16 9 N -0.62 -10.41 5.44 -12.33 -0.07 -10.47 16 10 C 0.26 5.43 8.11 -154.45 -1.25 4.18 16 11 C -0.29 -5.93 9.52 -39.83 -0.38 -6.31 16 12 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 13 C -0.09 -1.50 9.89 36.01 0.36 -1.15 16 14 N -0.31 -7.49 3.59 -58.33 -0.21 -7.70 16 15 C 0.26 6.61 5.81 -5.19 -0.03 6.58 16 16 C -0.54 -14.79 9.39 -34.44 -0.32 -15.11 16 17 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -25.01 13.29 55.43 0.74 -24.28 16 20 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 N -0.32 -7.40 12.59 31.43 0.40 -7.01 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 1.07 6.44 -51.93 -0.33 0.73 16 28 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 29 H 0.21 0.72 8.06 -52.49 -0.42 0.29 16 30 H 0.41 6.01 8.58 -40.82 -0.35 5.66 16 31 H 0.16 3.12 5.91 -52.49 -0.31 2.81 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.06 1.39 7.65 -51.93 -0.40 0.99 16 37 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 326.15 15.07 4.92 4.92 Total: -1.00 -32.09 326.15 -6.46 -38.54 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -4.30 Total: 5.03 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: -3.03 Total: -4.73 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.86 Total: -49.46 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.11 Total: -10.38 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.09 -6.46 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271115356.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.307 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds