Wall clock time and date at job start Tue Mar 31 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40368 * 126.64761 * 2 1 4 4 C 1.35130 * 107.11960 * 179.97438 * 3 2 1 5 5 O 1.33941 * 108.76721 * 359.73117 * 4 3 2 6 6 C 1.34913 * 109.38126 * 0.44182 * 5 4 3 7 7 C 1.46634 * 125.98393 * 179.82278 * 6 5 4 8 8 O 1.21713 * 119.99774 * 179.69008 * 7 6 5 9 9 N 1.34773 * 120.00024 * 359.69140 * 7 6 5 10 10 C 1.40079 * 119.99784 * 180.02562 * 9 7 6 11 11 C 1.40424 * 125.97668 * 0.29735 * 10 9 7 12 12 C 1.35232 * 107.86568 * 180.14604 * 11 10 9 13 13 C 1.50703 * 126.06766 * 179.84878 * 12 11 10 14 14 N 1.34973 * 107.86541 * 359.58490 * 12 11 10 15 15 C 1.46503 * 125.97339 * 180.24246 * 14 12 11 16 16 C 1.50699 * 109.46808 * 90.00128 * 15 14 12 17 17 H 1.07995 * 120.00443 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99624 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00076 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99990 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46894 * 89.99749 * 20 18 16 22 22 H 1.48496 * 109.47142 * 209.99882 * 20 18 16 23 23 H 1.48495 * 109.47030 * 330.00135 * 20 18 16 24 24 N 1.31229 * 125.97357 * 179.97438 * 10 9 7 25 25 H 1.09000 * 109.47492 * 270.03938 * 1 2 3 26 26 H 1.08998 * 109.47280 * 30.04585 * 1 2 3 27 27 H 1.09004 * 109.46788 * 150.04521 * 1 2 3 28 28 H 1.08003 * 126.44014 * 359.97438 * 3 2 1 29 29 H 1.07995 * 125.61397 * 180.02562 * 4 3 2 30 30 H 0.96998 * 120.00157 * 359.97438 * 9 7 6 31 31 H 1.07999 * 126.07071 * 359.97438 * 11 10 9 32 32 H 1.09002 * 109.47152 * 269.68932 * 13 12 11 33 33 H 1.09001 * 109.46980 * 149.69032 * 13 12 11 34 34 H 1.09004 * 109.47113 * 29.69013 * 13 12 11 35 35 H 1.08999 * 109.46899 * 210.00130 * 15 14 12 36 36 H 1.08999 * 109.46830 * 329.99997 * 15 14 12 37 37 H 0.96999 * 119.99503 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6745 0.0006 5 8 3.6006 -0.6648 0.0069 6 6 2.3221 -1.0956 0.0006 7 6 1.8846 -2.4951 0.0008 8 8 0.6969 -2.7614 0.0005 9 7 2.7975 -3.4866 0.0014 10 6 2.3794 -4.8235 0.0011 11 6 1.0486 -5.2717 -0.0058 12 6 1.0662 -6.6239 -0.0004 13 6 -0.1403 -7.5269 -0.0014 14 7 2.3561 -7.0212 0.0002 15 6 2.8295 -8.4077 0.0004 16 6 2.9925 -8.8829 -1.4204 17 1 2.7658 -8.2189 -2.2413 18 6 3.4302 -10.1659 -1.6722 19 7 3.7059 -10.9748 -0.6724 20 14 3.6316 -10.7554 -3.4333 21 1 5.0101 -10.4595 -3.8997 22 1 3.3914 -12.2194 -3.4958 23 1 2.6535 -10.0556 -4.3044 24 7 3.1630 -5.8762 0.0011 25 1 -0.3634 0.0007 1.0276 26 1 -0.3634 0.8895 -0.5145 27 1 -0.3633 -0.8904 -0.5132 28 1 2.0306 2.1595 -0.0004 29 1 4.5046 1.2917 0.0011 30 1 3.7439 -3.2744 0.0013 31 1 0.1674 -4.6474 -0.0113 32 1 -0.4318 -7.7451 1.0260 33 1 0.1024 -8.4570 -0.5155 34 1 -0.9642 -7.0319 -0.5156 35 1 3.7889 -8.4639 0.5147 36 1 2.1044 -9.0391 0.5138 37 1 4.0141 -11.8772 -0.8496 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271115356.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:18 Heat of formation + Delta-G solvation = 34.475841 kcal Electronic energy + Delta-G solvation = -21965.717068 eV Core-core repulsion = 18517.827227 eV Total energy + Delta-G solvation = -3447.889841 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.72838 -42.32352 -40.48681 -36.56744 -35.43588 -34.95838 -33.16576 -32.69044 -31.37441 -29.09628 -28.27148 -27.89279 -25.38178 -24.19575 -22.70450 -21.64625 -21.29618 -20.53921 -18.97916 -18.77143 -17.74418 -17.50954 -17.12791 -16.97915 -16.41543 -16.13240 -15.63943 -15.48406 -14.81403 -14.48894 -14.34161 -14.02794 -13.90149 -13.83170 -13.64820 -13.60569 -13.51812 -13.16972 -12.89969 -12.70806 -12.67488 -12.26328 -12.14532 -11.61666 -11.41311 -11.17036 -10.74697 -10.66665 -9.76073 -9.59856 -9.17004 -8.34078 -6.51725 -0.11288 0.99709 1.19758 1.37259 1.38080 1.39625 1.50402 1.70081 1.78932 2.26840 2.28516 2.40032 2.95889 3.54684 3.78702 3.85910 3.94707 4.11012 4.43127 4.50046 4.64702 4.68866 4.76469 4.77469 4.80188 4.84781 4.93819 4.96017 5.09118 5.11414 5.20679 5.25199 5.48433 5.52544 5.79287 5.83432 5.85011 6.19963 6.23288 6.60302 6.81070 6.97317 7.19336 8.72188 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027601 B = 0.003294 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.199160 B = 8498.947027 C = 8954.929592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.078 4.078 3 C -0.234 4.234 4 C 0.021 3.979 5 O -0.176 6.176 6 C -0.121 4.121 7 C 0.610 3.390 8 O -0.518 6.518 9 N -0.619 5.619 10 C 0.270 3.730 11 C -0.296 4.296 12 C 0.090 3.910 13 C -0.086 4.086 14 N -0.340 5.340 15 C 0.275 3.725 16 C -0.555 4.555 17 H 0.049 0.951 18 C 0.023 3.977 19 N -0.918 5.918 20 Si 0.972 3.028 21 H -0.275 1.275 22 H -0.269 1.269 23 H -0.269 1.269 24 N -0.357 5.357 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.188 0.812 29 H 0.258 0.742 30 H 0.423 0.577 31 H 0.171 0.829 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.024 0.976 36 H 0.055 0.945 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 23.066 1.767 23.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.252 4.252 4 C -0.049 4.049 5 O -0.072 6.072 6 C -0.172 4.172 7 C 0.399 3.601 8 O -0.395 6.395 9 N -0.267 5.267 10 C 0.016 3.984 11 C -0.327 4.327 12 C -0.040 4.040 13 C -0.144 4.144 14 N -0.123 5.123 15 C 0.156 3.844 16 C -0.593 4.593 17 H 0.068 0.932 18 C -0.178 4.178 19 N -0.556 5.556 20 Si 0.795 3.205 21 H -0.201 1.201 22 H -0.194 1.194 23 H -0.194 1.194 24 N -0.187 5.187 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.206 0.794 29 H 0.273 0.727 30 H 0.261 0.739 31 H 0.188 0.812 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.656 21.952 1.833 22.330 hybrid contribution 0.234 -0.192 -0.664 0.730 sum -3.421 21.760 1.169 22.058 Atomic orbital electron populations 1.20494 0.87612 1.03916 1.03397 1.21044 0.98405 0.91326 0.97331 1.22132 0.92007 1.00808 1.10288 1.25435 1.01704 0.79357 0.98375 1.84078 1.27362 1.24616 1.71143 1.21170 0.82986 0.92884 1.20174 1.16765 0.85027 0.82264 0.76071 1.90756 1.16345 1.82214 1.50195 1.42388 1.11376 1.00930 1.72009 1.19230 0.92777 0.84956 1.01396 1.21442 0.96812 0.92868 1.21546 1.21787 0.87762 0.95299 0.99165 1.20523 0.91999 0.97575 1.04264 1.48834 1.03395 1.05864 1.54169 1.19279 0.95781 0.71485 0.97859 1.21437 1.47494 0.98599 0.91739 0.93242 1.25735 0.93804 0.95975 1.02262 1.70002 1.44519 1.08046 1.33002 0.85351 0.78674 0.77816 0.78626 1.20057 1.19412 1.19385 1.77193 1.18916 0.91203 1.31395 0.90100 0.88838 0.91512 0.79449 0.72665 0.73929 0.81172 0.88710 0.91345 0.87742 0.95753 0.92764 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 9.82 71.24 0.70 -1.13 16 2 C -0.08 -1.62 6.20 -19.74 -0.12 -1.74 16 3 C -0.23 -3.12 10.83 22.07 0.24 -2.88 16 4 C 0.02 0.25 12.08 67.10 0.81 1.06 16 5 O -0.18 -3.64 10.40 -5.12 -0.05 -3.69 16 6 C -0.12 -3.07 7.13 24.07 0.17 -2.90 16 7 C 0.61 19.55 7.75 86.43 0.67 20.22 16 8 O -0.52 -18.45 11.86 -4.39 -0.05 -18.50 16 9 N -0.62 -21.30 5.44 -311.14 -1.69 -22.99 16 10 C 0.27 11.53 8.11 133.35 1.08 12.62 16 11 C -0.30 -12.33 9.52 22.11 0.21 -12.12 16 12 C 0.09 3.86 6.92 41.38 0.29 4.14 16 13 C -0.09 -2.85 9.89 71.24 0.70 -2.15 16 14 N -0.34 -16.79 3.59 -338.44 -1.22 -18.01 16 15 C 0.27 14.70 5.81 85.63 0.50 15.20 16 16 C -0.55 -31.40 9.39 25.60 0.24 -31.16 16 17 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 18 C 0.02 1.29 5.46 84.65 0.46 1.75 16 19 N -0.92 -52.07 13.29 21.45 0.28 -51.78 16 20 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 N -0.36 -17.36 12.59 -54.49 -0.69 -18.05 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.07 1.58 6.44 -2.38 -0.02 1.57 16 28 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 29 H 0.26 0.36 8.06 -2.91 -0.02 0.33 16 30 H 0.42 12.64 8.58 -92.71 -0.80 11.84 16 31 H 0.17 6.68 5.91 -2.91 -0.02 6.67 16 32 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.07 2.50 7.71 -2.39 -0.02 2.48 16 34 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 35 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 2.85 7.65 -2.39 -0.02 2.84 16 37 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -71.77 326.15 4.88 -66.89 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.32 Total: 19.88 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 5.95 Total: 0.90 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -3.31 Total: -110.83 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.11 Total: -22.19 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -71.77 4.88 -66.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271115356.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.364 kcal (2) G-P(sol) polarization free energy of solvation -71.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds