Wall clock time and date at job start Tue Mar 31 2020 06:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.30729 * 126.27487 * 239.69045 * 5 2 1 7 7 N 1.28651 * 110.33924 * 179.81849 * 6 5 2 8 8 C 1.32178 * 109.57285 * 0.45319 * 7 6 5 9 9 C 1.41075 * 133.24749 * 179.70750 * 8 7 6 10 10 C 1.35615 * 119.41885 * 180.02562 * 9 8 7 11 11 C 1.41872 * 119.59241 * 359.97438 * 10 9 8 12 12 C 1.47410 * 119.98792 * 180.02562 * 11 10 9 13 13 O 1.21548 * 120.00168 * 179.97438 * 12 11 10 14 14 O 1.34772 * 120.00429 * 359.97438 * 12 11 10 15 15 C 1.34866 * 117.00248 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99917 * 0.02562 * 15 14 12 17 17 C 1.38783 * 119.99756 * 179.97438 * 15 14 12 18 18 N 1.31431 * 120.00375 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99959 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47200 * 59.99613 * 19 17 15 21 21 H 1.48503 * 109.47434 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47060 * 300.00050 * 19 17 15 23 23 C 1.36617 * 120.01798 * 359.97438 * 11 10 9 24 24 N 1.35816 * 120.37073 * 0.02562 * 23 11 10 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 34 34 H 1.07995 * 120.28922 * 0.04165 * 9 8 7 35 35 H 1.08001 * 120.20234 * 180.02562 * 10 9 8 36 36 H 0.96999 * 120.00104 * 180.02562 * 18 17 15 37 37 H 1.08002 * 119.81167 * 180.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 2.7916 -1.7743 -1.2535 7 7 3.0327 -2.1253 -2.4675 8 6 2.4389 -1.2854 -3.2976 9 6 2.3775 -1.1979 -4.7043 10 6 1.6687 -0.1947 -5.2790 11 6 1.0001 0.7500 -4.4585 12 6 0.2267 1.8436 -5.0740 13 8 -0.3467 2.6528 -4.3713 14 8 0.1552 1.9463 -6.4159 15 6 -0.5690 2.9692 -6.9140 16 1 -1.0588 3.6605 -6.2444 17 6 -0.6838 3.1340 -8.2873 18 7 -0.0873 2.2929 -9.1023 19 14 -1.6861 4.5512 -8.9773 20 1 -1.1122 5.8380 -8.5082 21 1 -1.6523 4.5051 -10.4612 22 1 -3.0914 4.4368 -8.5110 23 6 1.0720 0.6458 -3.0982 24 7 1.7819 -0.3590 -2.5230 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -0.2075 2.1393 34 1 2.8903 -1.9237 -5.3181 35 1 1.6129 -0.1160 -6.3547 36 1 -0.1672 2.4084 -10.0621 37 1 0.5613 1.3666 -2.4768 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769207541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:14 Heat of formation + Delta-G solvation = 0.713205 kcal Electronic energy + Delta-G solvation = -22673.981884 eV Core-core repulsion = 19224.627985 eV Total energy + Delta-G solvation = -3449.353899 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.84726 -41.27389 -39.22181 -38.16715 -37.30485 -34.96810 -34.33175 -32.54768 -30.36615 -28.35006 -28.24931 -27.99835 -26.02187 -24.84484 -23.86542 -22.64389 -21.05319 -20.02249 -19.50819 -18.11641 -18.06591 -17.83735 -17.15539 -16.65188 -16.48224 -16.27929 -16.03557 -15.13070 -15.06678 -14.78865 -14.23527 -13.81436 -13.66188 -13.57816 -13.37476 -13.17391 -13.16008 -12.79007 -12.71946 -12.52782 -12.47439 -12.38264 -12.17690 -12.10627 -12.05025 -11.95136 -11.60644 -11.34144 -10.81078 -10.71600 -9.28597 -8.60199 -6.36218 -0.82336 -0.27444 0.89908 1.16029 1.37401 1.45591 1.52412 1.71285 2.03925 2.28831 2.47883 2.85299 2.97767 3.07692 3.32624 3.46993 3.51140 3.82280 3.85663 3.88871 4.05945 4.45540 4.51074 4.56894 4.70213 4.73361 4.74587 4.85522 4.88556 4.90890 4.92090 4.96980 5.11071 5.12989 5.20894 5.22380 5.38719 5.57715 5.74270 6.48464 6.84159 7.27811 7.60087 8.58899 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027175 B = 0.004017 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.106744 B = 6969.570137 C = 7808.620525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.020 3.980 3 C -0.148 4.148 4 C -0.124 4.124 5 C 0.165 3.835 6 N -0.269 5.269 7 N -0.318 5.318 8 C 0.191 3.809 9 C -0.079 4.079 10 C -0.050 4.050 11 C -0.116 4.116 12 C 0.443 3.557 13 O -0.570 6.570 14 O -0.219 6.219 15 C -0.417 4.417 16 H 0.090 0.910 17 C 0.003 3.997 18 N -0.889 5.889 19 Si 1.017 2.983 20 H -0.261 1.261 21 H -0.261 1.261 22 H -0.261 1.261 23 C 0.136 3.864 24 N -0.391 5.391 25 H 0.046 0.954 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.192 0.808 35 H 0.163 0.837 36 H 0.282 0.718 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.136 -3.036 13.983 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 C -0.205 4.205 4 C -0.182 4.182 5 C -0.098 4.098 6 N -0.106 5.106 7 N -0.162 5.162 8 C -0.059 4.059 9 C -0.100 4.100 10 C -0.075 4.075 11 C -0.121 4.121 12 C 0.292 3.708 13 O -0.470 6.470 14 O -0.125 6.125 15 C -0.492 4.492 16 H 0.108 0.892 17 C -0.199 4.199 18 N -0.525 5.525 19 Si 0.835 3.165 20 H -0.185 1.185 21 H -0.185 1.185 22 H -0.185 1.185 23 C 0.011 3.989 24 N -0.070 5.070 25 H 0.065 0.935 26 H 0.123 0.877 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.209 0.791 35 H 0.180 0.820 36 H 0.092 0.908 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 2.955 -4.191 14.564 15.441 hybrid contribution -1.035 1.460 -1.181 2.144 sum 1.920 -2.731 13.383 13.793 Atomic orbital electron populations 1.22038 0.91692 1.02913 1.03897 1.19392 0.96618 0.94905 0.87402 1.22036 1.01657 0.92957 1.03895 1.21707 1.01525 1.00271 0.94652 1.25664 1.01900 0.97398 0.84829 1.74078 1.12955 1.10131 1.13431 1.74823 1.23216 1.22855 0.95294 1.22845 0.97358 0.90014 0.95676 1.20442 1.01259 1.00602 0.87681 1.21470 0.92714 0.91218 1.02051 1.18666 1.03266 0.97929 0.92247 1.20697 0.82190 0.85409 0.82532 1.90632 1.48447 1.44479 1.63446 1.83885 1.61268 1.47304 1.20079 1.21520 1.30146 1.05816 0.91736 0.89244 1.26524 0.97833 1.01299 0.94288 1.70030 1.40901 1.36857 1.04720 0.84687 0.78022 0.76145 0.77624 1.18504 1.18536 1.18513 1.21640 0.93362 0.90263 0.93628 1.43610 1.34190 1.20761 1.08441 0.93506 0.87732 0.92306 0.87740 0.92310 0.93502 0.92403 0.92398 0.88533 0.79057 0.81974 0.90825 0.78938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.40 71.98 0.60 -2.00 16 2 C 0.02 0.39 0.89 -52.93 -0.05 0.34 16 3 C -0.15 -2.61 8.40 71.98 0.60 -2.00 16 4 C -0.12 -2.04 7.97 71.98 0.57 -1.47 16 5 C 0.16 4.68 6.35 137.67 0.87 5.55 16 6 N -0.27 -8.80 11.50 -49.60 -0.57 -9.37 16 7 N -0.32 -11.04 12.29 -55.21 -0.68 -11.72 16 8 C 0.19 6.16 7.92 134.13 1.06 7.22 16 9 C -0.08 -2.24 10.09 22.36 0.23 -2.01 16 10 C -0.05 -1.63 9.62 22.56 0.22 -1.41 16 11 C -0.12 -4.27 5.84 -20.34 -0.12 -4.38 16 12 C 0.44 20.86 7.82 70.24 0.55 21.41 16 13 O -0.57 -28.59 15.52 19.68 0.31 -28.29 16 14 O -0.22 -11.84 9.01 10.82 0.10 -11.75 16 15 C -0.42 -23.44 9.65 67.95 0.66 -22.79 16 16 H 0.09 5.06 6.86 -2.91 -0.02 5.04 16 17 C 0.00 0.15 5.49 84.88 0.47 0.62 16 18 N -0.89 -48.72 13.67 21.63 0.30 -48.42 16 19 Si 1.02 40.24 29.55 68.60 2.03 42.27 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 23 C 0.14 4.31 9.13 83.70 0.76 5.07 16 24 N -0.39 -12.01 2.94 -341.62 -1.00 -13.02 16 25 H 0.05 0.95 6.31 -2.39 -0.02 0.93 16 26 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 0.95 6.32 -2.39 -0.02 0.93 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.19 4.12 8.06 -2.91 -0.02 4.10 16 35 H 0.16 5.40 7.65 -2.91 -0.02 5.38 16 36 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 37 H 0.19 5.61 5.31 -2.91 -0.02 5.59 16 Total: -1.00 -68.62 319.19 8.01 -60.61 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 1.10 Total: 15.52 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 6.43 Total: 4.16 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -1.96 Total: -82.52 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: 0.40 Total: -40.03 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -68.62 8.01 -60.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769207541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.322 kcal (2) G-P(sol) polarization free energy of solvation -68.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds