Wall clock time and date at job start Tue Mar 31 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 116.99950 * 2 1 4 4 O 1.20831 * 120.00387 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99962 * 180.02562 * 3 2 1 6 6 H 1.08999 * 115.56096 * 39.10342 * 5 3 2 7 7 C 1.53068 * 117.51559 * 253.39961 * 5 3 2 8 8 C 1.52992 * 59.98645 * 252.52171 * 7 5 3 9 9 H 1.09002 * 117.50429 * 252.50175 * 8 7 5 10 10 C 1.50706 * 117.50176 * 107.49745 * 8 7 5 11 11 O 1.21283 * 119.99404 * 5.13348 * 10 8 7 12 12 N 1.34773 * 120.00339 * 185.12508 * 10 8 7 13 13 C 1.37137 * 120.00029 * 4.27446 * 12 10 8 14 14 H 1.08000 * 120.00251 * 57.03214 * 13 12 10 15 15 C 1.38886 * 119.99855 * 237.03320 * 13 12 10 16 16 N 1.31425 * 120.00092 * 5.93680 * 15 13 12 17 17 Si 1.86803 * 119.99740 * 186.20804 * 15 13 12 18 18 H 1.48504 * 109.47141 * 269.72393 * 17 15 13 19 19 H 1.48494 * 109.47302 * 29.72760 * 17 15 13 20 20 H 1.48509 * 109.46663 * 149.72862 * 17 15 13 21 21 C 1.39784 * 119.99830 * 184.26724 * 12 10 8 22 22 C 1.38962 * 120.07901 * 353.56381 * 21 12 10 23 23 C 1.38091 * 119.91688 * 179.69650 * 22 21 12 24 24 C 1.38307 * 120.07931 * 0.57029 * 23 22 21 25 25 C 1.38302 * 120.15734 * 359.72646 * 24 23 22 26 26 C 1.38088 * 120.07939 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46398 * 299.99298 * 1 2 3 29 29 H 1.09001 * 109.47586 * 59.98883 * 1 2 3 30 30 H 1.09003 * 117.49747 * 145.03668 * 7 5 3 31 31 H 1.08998 * 117.53311 * 359.97438 * 7 5 3 32 32 H 0.97002 * 119.99547 * 175.26304 * 16 15 13 33 33 H 1.07997 * 120.04173 * 359.97228 * 22 21 12 34 34 H 1.07999 * 119.95685 * 180.29725 * 23 22 21 35 35 H 1.07994 * 119.91819 * 179.74460 * 24 23 22 36 36 H 1.07995 * 119.96463 * 179.97438 * 25 24 23 37 37 H 1.07998 * 120.04282 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0757 0.5376 -0.6211 7 6 4.2528 1.6989 1.3002 8 6 4.2012 2.6623 0.1128 9 1 5.1279 2.8380 -0.4336 10 6 3.2735 3.8455 0.2165 11 8 2.6741 4.0573 1.2493 12 7 3.1103 4.6683 -0.8384 13 6 3.7191 4.3807 -2.0330 14 1 3.5298 3.4365 -2.5221 15 6 4.5791 5.3035 -2.6141 16 7 4.9011 6.4005 -1.9659 17 14 5.2722 4.9890 -4.3200 18 1 6.5541 4.2482 -4.2047 19 1 4.3041 4.1836 -5.1070 20 1 5.5095 6.2854 -5.0046 21 6 2.3203 5.8149 -0.7147 22 6 1.5956 6.0391 0.4496 23 6 0.8212 7.1760 0.5707 24 6 0.7571 8.0850 -0.4697 25 6 1.4721 7.8620 -1.6323 26 6 2.2535 6.7304 -1.7580 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 5.2134 1.2404 1.5349 31 1 3.6162 1.9213 2.1565 32 1 5.5543 7.0115 -2.3413 33 1 1.6415 5.3273 1.2606 34 1 0.2616 7.3533 1.4772 35 1 0.1474 8.9712 -0.3738 36 1 1.4194 8.5737 -2.4429 37 1 2.8119 6.5571 -2.6659 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888564315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:55 Heat of formation + Delta-G solvation = -34.580319 kcal Electronic energy + Delta-G solvation = -23619.906567 eV Core-core repulsion = 20136.729475 eV Total energy + Delta-G solvation = -3483.177092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.49242 -39.39363 -37.59304 -36.17638 -35.32979 -34.84394 -31.87970 -29.50793 -28.85031 -27.98270 -25.22960 -24.48287 -23.55180 -21.41031 -20.82279 -20.30066 -19.07437 -17.95454 -17.24356 -16.47142 -16.03746 -15.60369 -15.43077 -15.02294 -14.71956 -14.30591 -13.66282 -13.59995 -13.03246 -12.94364 -12.84752 -12.59891 -12.17258 -11.89454 -11.82652 -11.68113 -11.37590 -11.28304 -10.97420 -10.76490 -10.57094 -10.44519 -10.31137 -10.18970 -9.95833 -9.93064 -9.09999 -8.67891 -8.03968 -7.66537 -6.75001 -6.24666 -4.47823 2.42390 2.57673 2.69670 2.87940 3.03243 3.12984 3.15831 3.64987 3.96570 4.23732 4.50748 4.79325 5.06344 5.08234 5.15184 5.24080 5.30426 5.32559 5.45587 5.62431 5.83929 5.95694 6.00047 6.10768 6.20758 6.26432 6.44836 6.64608 6.84115 6.86943 7.05272 7.26845 7.30503 7.63558 7.74350 7.84203 7.91797 8.13298 8.16099 8.56472 8.91675 9.38094 9.77436 10.52465 Molecular weight = 289.11amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.007607 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.921383 B = 3680.067794 C = 4880.025706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.363 6.363 3 C 0.477 3.523 4 O -0.468 6.468 5 C -0.150 4.150 6 H 0.138 0.862 7 C -0.130 4.130 8 C -0.116 4.116 9 H 0.141 0.859 10 C 0.537 3.463 11 O -0.556 6.556 12 N -0.377 5.377 13 C -0.360 4.360 14 H 0.088 0.912 15 C 0.054 3.946 16 N -0.844 5.844 17 Si 0.914 3.086 18 H -0.272 1.272 19 H -0.266 1.266 20 H -0.279 1.279 21 C 0.190 3.810 22 C -0.188 4.188 23 C -0.123 4.123 24 C -0.176 4.176 25 C -0.126 4.126 26 C -0.103 4.103 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.274 0.726 33 H 0.174 0.826 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.861 -8.795 1.164 9.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.280 6.280 3 C 0.318 3.682 4 O -0.351 6.351 5 C -0.170 4.170 6 H 0.155 0.845 7 C -0.168 4.168 8 C -0.137 4.137 9 H 0.159 0.841 10 C 0.328 3.672 11 O -0.440 6.440 12 N -0.084 5.084 13 C -0.488 4.488 14 H 0.106 0.894 15 C -0.155 4.155 16 N -0.477 5.477 17 Si 0.739 3.261 18 H -0.198 1.198 19 H -0.190 1.190 20 H -0.204 1.204 21 C 0.093 3.907 22 C -0.207 4.207 23 C -0.142 4.142 24 C -0.195 4.195 25 C -0.145 4.145 26 C -0.124 4.124 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.085 0.915 33 H 0.190 0.810 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.266 -8.225 1.603 8.681 hybrid contribution 0.353 0.137 -1.186 1.245 sum -1.913 -8.088 0.417 8.322 Atomic orbital electron populations 1.23191 0.76782 1.03032 1.02647 1.86447 1.22986 1.33670 1.84907 1.22666 0.90612 0.81407 0.73474 1.90815 1.66150 1.35553 1.42624 1.21691 0.88421 1.01235 1.05651 0.84451 1.23084 1.01786 1.00406 0.91477 1.22259 1.01531 0.88142 1.01789 0.84081 1.19439 0.81374 0.83726 0.82617 1.90154 1.48819 1.73770 1.31236 1.40694 1.39187 1.18646 1.09843 1.19272 1.26625 1.04842 0.98055 0.89428 1.25678 0.95430 0.94961 0.99433 1.70020 1.28994 1.10321 1.38317 0.86136 0.79548 0.78376 0.82074 1.19793 1.18996 1.20414 1.18226 0.90126 0.88566 0.93795 1.22740 0.98111 0.99665 1.00195 1.20843 1.00319 0.95252 0.97816 1.20745 1.03463 1.00010 0.95303 1.20736 0.98710 0.97751 0.97344 1.21033 0.98075 0.93210 1.00109 0.88512 0.92030 0.92015 0.86968 0.87261 0.91541 0.80978 0.87961 0.88388 0.87980 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.36 -5.57 10.57 -39.24 -0.41 -5.98 16 3 C 0.48 8.71 7.71 36.01 0.28 8.99 16 4 O -0.47 -10.47 13.19 -25.71 -0.34 -10.81 16 5 C -0.15 -2.40 6.30 -91.74 -0.58 -2.98 16 6 H 0.14 1.72 8.14 -51.93 -0.42 1.30 16 7 C -0.13 -1.95 9.75 -26.70 -0.26 -2.21 16 8 C -0.12 -2.22 5.16 -91.77 -0.47 -2.69 16 9 H 0.14 2.58 7.77 -51.93 -0.40 2.18 16 10 C 0.54 13.05 5.07 -10.98 -0.06 12.99 16 11 O -0.56 -14.30 11.64 -15.22 -0.18 -14.48 16 12 N -0.38 -9.82 2.62 -58.98 -0.15 -9.97 16 13 C -0.36 -9.03 7.43 -14.94 -0.11 -9.14 16 14 H 0.09 2.13 7.84 -52.49 -0.41 1.72 16 15 C 0.05 1.32 3.65 -17.49 -0.06 1.26 16 16 N -0.84 -21.99 11.19 55.49 0.62 -21.37 16 17 Si 0.91 18.64 29.56 -169.99 -5.02 13.61 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 C 0.19 5.05 6.06 -83.69 -0.51 4.55 16 22 C -0.19 -4.78 9.05 -39.37 -0.36 -5.13 16 23 C -0.12 -2.76 10.04 -39.61 -0.40 -3.16 16 24 C -0.18 -3.74 10.04 -39.53 -0.40 -4.14 16 25 C -0.13 -2.83 10.04 -39.61 -0.40 -3.23 16 26 C -0.10 -2.62 7.84 -39.37 -0.31 -2.93 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 29 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.11 1.79 7.68 -51.93 -0.40 1.40 16 32 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 33 H 0.17 4.58 4.53 -56.26 -0.25 4.32 16 34 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 37 H 0.13 3.43 5.11 -52.49 -0.27 3.16 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -31.40 314.88 -7.56 -38.96 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -4.25 Total: 11.59 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -2.56 Total: -6.30 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.47 Total: -31.34 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.93 Total: -31.27 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.40 -7.56 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888564315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.380 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds