Wall clock time and date at job start Tue Mar 31 2020 05:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 116.99950 * 2 1 4 4 O 1.20831 * 120.00387 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99962 * 180.02562 * 3 2 1 6 6 H 1.08999 * 115.56096 * 39.10342 * 5 3 2 7 7 C 1.53068 * 117.51559 * 253.39961 * 5 3 2 8 8 C 1.52992 * 59.98645 * 252.52171 * 7 5 3 9 9 H 1.09002 * 117.50429 * 252.50175 * 8 7 5 10 10 C 1.50706 * 117.50176 * 107.49745 * 8 7 5 11 11 O 1.21283 * 119.99404 * 5.13348 * 10 8 7 12 12 N 1.34773 * 120.00339 * 185.12508 * 10 8 7 13 13 C 1.37137 * 120.00029 * 4.27446 * 12 10 8 14 14 H 1.08000 * 120.00251 * 57.03214 * 13 12 10 15 15 C 1.38886 * 119.99855 * 237.03320 * 13 12 10 16 16 N 1.31425 * 120.00092 * 5.93680 * 15 13 12 17 17 Si 1.86803 * 119.99740 * 186.20804 * 15 13 12 18 18 H 1.48504 * 109.47141 * 269.72393 * 17 15 13 19 19 H 1.48494 * 109.47302 * 29.72760 * 17 15 13 20 20 H 1.48509 * 109.46663 * 149.72862 * 17 15 13 21 21 C 1.39784 * 119.99830 * 184.26724 * 12 10 8 22 22 C 1.38962 * 120.07901 * 353.56381 * 21 12 10 23 23 C 1.38091 * 119.91688 * 179.69650 * 22 21 12 24 24 C 1.38307 * 120.07931 * 0.57029 * 23 22 21 25 25 C 1.38302 * 120.15734 * 359.72646 * 24 23 22 26 26 C 1.38088 * 120.07939 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46398 * 299.99298 * 1 2 3 29 29 H 1.09001 * 109.47586 * 59.98883 * 1 2 3 30 30 H 1.09003 * 117.49747 * 145.03668 * 7 5 3 31 31 H 1.08998 * 117.53311 * 359.97438 * 7 5 3 32 32 H 0.97002 * 119.99547 * 175.26304 * 16 15 13 33 33 H 1.07997 * 120.04173 * 359.97228 * 22 21 12 34 34 H 1.07999 * 119.95685 * 180.29725 * 23 22 21 35 35 H 1.07994 * 119.91819 * 179.74460 * 24 23 22 36 36 H 1.07995 * 119.96463 * 179.97438 * 25 24 23 37 37 H 1.07998 * 120.04282 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0757 0.5376 -0.6211 7 6 4.2528 1.6989 1.3002 8 6 4.2012 2.6623 0.1128 9 1 5.1279 2.8380 -0.4336 10 6 3.2735 3.8455 0.2165 11 8 2.6741 4.0573 1.2493 12 7 3.1103 4.6683 -0.8384 13 6 3.7191 4.3807 -2.0330 14 1 3.5298 3.4365 -2.5221 15 6 4.5791 5.3035 -2.6141 16 7 4.9011 6.4005 -1.9659 17 14 5.2722 4.9890 -4.3200 18 1 6.5541 4.2482 -4.2047 19 1 4.3041 4.1836 -5.1070 20 1 5.5095 6.2854 -5.0046 21 6 2.3203 5.8149 -0.7147 22 6 1.5956 6.0391 0.4496 23 6 0.8212 7.1760 0.5707 24 6 0.7571 8.0850 -0.4697 25 6 1.4721 7.8620 -1.6323 26 6 2.2535 6.7304 -1.7580 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 5.2134 1.2404 1.5349 31 1 3.6162 1.9213 2.1565 32 1 5.5543 7.0115 -2.3413 33 1 1.6415 5.3273 1.2606 34 1 0.2616 7.3533 1.4772 35 1 0.1474 8.9712 -0.3738 36 1 1.4194 8.5737 -2.4429 37 1 2.8119 6.5571 -2.6659 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888564315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:54 Heat of formation + Delta-G solvation = -52.044915 kcal Electronic energy + Delta-G solvation = -23620.663889 eV Core-core repulsion = 20136.729475 eV Total energy + Delta-G solvation = -3483.934414 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.99859 -41.05331 -39.21410 -37.67173 -36.85382 -36.64062 -33.76346 -31.33808 -30.63639 -29.14376 -27.09115 -25.90957 -25.00395 -23.22491 -22.49636 -21.73547 -20.76542 -19.59437 -18.80486 -17.99198 -17.37010 -17.29330 -17.20501 -16.72025 -16.21099 -15.86477 -15.29145 -15.24446 -14.71660 -14.63864 -14.22437 -14.17770 -13.85106 -13.57580 -13.37942 -13.09446 -13.00791 -12.86299 -12.68848 -12.45266 -12.11302 -11.81640 -11.73910 -11.65997 -11.51191 -11.40857 -10.93578 -10.52688 -9.87097 -9.51235 -8.61981 -8.10721 -6.40108 0.71894 0.83437 1.08456 1.41213 1.46163 1.56877 1.61805 2.05580 2.26521 2.72730 2.90879 3.00971 3.38935 3.71044 3.79374 3.87371 4.10816 4.27274 4.29714 4.30877 4.33682 4.49478 4.59910 4.63851 4.79588 4.84958 4.97739 5.02927 5.11925 5.23571 5.34002 5.39312 5.45116 5.82124 5.90914 5.96376 6.12494 6.28027 6.68100 6.76410 7.04892 7.53672 7.94130 8.68805 Molecular weight = 289.11amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.007607 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.921383 B = 3680.067794 C = 4880.025706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.354 6.354 3 C 0.472 3.528 4 O -0.519 6.519 5 C -0.137 4.137 6 H 0.181 0.819 7 C -0.100 4.100 8 C -0.150 4.150 9 H 0.146 0.854 10 C 0.522 3.478 11 O -0.583 6.583 12 N -0.394 5.394 13 C -0.371 4.371 14 H 0.087 0.913 15 C 0.021 3.979 16 N -0.879 5.879 17 Si 0.982 3.018 18 H -0.258 1.258 19 H -0.263 1.263 20 H -0.281 1.281 21 C 0.157 3.843 22 C -0.217 4.217 23 C -0.123 4.123 24 C -0.168 4.168 25 C -0.127 4.127 26 C -0.127 4.127 27 H 0.142 0.858 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.162 0.838 31 H 0.090 0.910 32 H 0.274 0.726 33 H 0.156 0.844 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 -9.860 0.502 9.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.271 6.271 3 C 0.316 3.684 4 O -0.407 6.407 5 C -0.156 4.156 6 H 0.198 0.802 7 C -0.137 4.137 8 C -0.171 4.171 9 H 0.164 0.836 10 C 0.316 3.684 11 O -0.469 6.469 12 N -0.101 5.101 13 C -0.498 4.498 14 H 0.105 0.895 15 C -0.185 4.185 16 N -0.512 5.512 17 Si 0.804 3.196 18 H -0.183 1.183 19 H -0.187 1.187 20 H -0.207 1.207 21 C 0.060 3.940 22 C -0.237 4.237 23 C -0.142 4.142 24 C -0.187 4.187 25 C -0.145 4.145 26 C -0.148 4.148 27 H 0.160 0.840 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.180 0.820 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.173 0.827 34 H 0.150 0.850 35 H 0.159 0.841 36 H 0.150 0.850 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.895 -9.335 0.948 9.573 hybrid contribution 0.098 0.461 -0.913 1.028 sum -1.798 -8.874 0.034 9.055 Atomic orbital electron populations 1.23501 0.75132 1.05713 1.01859 1.86442 1.24580 1.31956 1.84107 1.23228 0.91693 0.81387 0.72096 1.90813 1.67416 1.37324 1.45118 1.21955 0.87241 0.99590 1.06854 0.80153 1.23260 1.03343 0.97398 0.89699 1.22174 1.01123 0.87812 1.06006 0.83599 1.20279 0.81561 0.84643 0.81915 1.90116 1.50110 1.74642 1.32044 1.40994 1.39507 1.18937 1.10621 1.19453 1.26917 1.05140 0.98319 0.89517 1.26413 0.95196 0.94228 1.02682 1.70148 1.29657 1.11307 1.40130 0.85111 0.79217 0.78078 0.77217 1.18257 1.18717 1.20666 1.18664 0.91045 0.89631 0.94662 1.22762 0.99925 1.01113 0.99913 1.21214 0.99382 0.94210 0.99399 1.21164 1.02783 1.00773 0.93995 1.21134 0.97550 0.97076 0.98764 1.21070 0.99532 0.94627 0.99559 0.84002 0.92826 0.92921 0.81991 0.89126 0.91578 0.82722 0.85030 0.84065 0.85003 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.35 -10.43 10.57 -51.36 -0.54 -10.98 16 3 C 0.47 17.20 7.71 71.24 0.55 17.75 16 4 O -0.52 -24.19 13.19 28.61 0.38 -23.82 16 5 C -0.14 -4.16 6.30 -11.52 -0.07 -4.23 16 6 H 0.18 3.85 8.14 -2.39 -0.02 3.83 16 7 C -0.10 -2.82 9.75 30.61 0.30 -2.52 16 8 C -0.15 -5.74 5.16 -11.54 -0.06 -5.80 16 9 H 0.15 5.32 7.77 -2.39 -0.02 5.30 16 10 C 0.52 26.49 5.07 87.66 0.44 26.94 16 11 O -0.58 -31.72 11.64 16.83 0.20 -31.53 16 12 N -0.39 -21.42 2.62 -458.90 -1.20 -22.62 16 13 C -0.37 -19.16 7.43 84.02 0.62 -18.54 16 14 H 0.09 4.33 7.84 -2.91 -0.02 4.31 16 15 C 0.02 1.02 3.65 84.91 0.31 1.33 16 16 N -0.88 -46.97 11.19 21.65 0.24 -46.73 16 17 Si 0.98 38.29 29.56 68.60 2.03 40.32 16 18 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 20 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 21 C 0.16 8.73 6.06 38.22 0.23 8.96 16 22 C -0.22 -11.53 9.05 22.41 0.20 -11.32 16 23 C -0.12 -5.49 10.04 22.25 0.22 -5.27 16 24 C -0.17 -6.84 10.04 22.30 0.22 -6.61 16 25 C -0.13 -5.58 10.04 22.25 0.22 -5.35 16 26 C -0.13 -6.60 7.84 22.41 0.18 -6.43 16 27 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 29 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 30 H 0.16 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.09 2.94 7.68 -2.39 -0.02 2.92 16 32 H 0.27 13.79 8.32 -92.71 -0.77 13.02 16 33 H 0.16 8.76 4.53 -62.58 -0.28 8.47 16 34 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 35 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 36 H 0.13 4.90 8.06 -2.91 -0.02 4.87 16 37 H 0.12 6.31 5.11 -2.91 -0.01 6.30 16 Total: -1.00 -73.27 314.88 6.50 -66.78 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.82 Total: 37.73 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 4.57 Total: -9.15 kcal Atomic # 7 Polarization: -68.39 SS G_CDS: -0.96 Total: -69.35 kcal Atomic # 8 Polarization: -66.35 SS G_CDS: 0.03 Total: -66.32 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -73.27 6.50 -66.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888564315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.730 kcal (2) G-P(sol) polarization free energy of solvation -73.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds