Wall clock time and date at job start Tue Mar 31 2020 05:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46499 * 109.47616 * 2 1 4 4 C 1.36850 * 119.99789 * 263.90425 * 3 2 1 5 5 H 1.07995 * 120.00381 * 137.46882 * 4 3 2 6 6 C 1.39027 * 119.99932 * 317.45502 * 4 3 2 7 7 N 1.31390 * 119.99940 * 346.47200 * 6 4 3 8 8 Si 1.86801 * 120.00103 * 166.46960 * 6 4 3 9 9 H 1.48502 * 109.47042 * 60.00417 * 8 6 4 10 10 H 1.48503 * 109.46961 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46962 * 300.00450 * 8 6 4 12 12 C 1.34773 * 120.00280 * 83.89194 * 3 2 1 13 13 O 1.21746 * 119.99404 * 5.69348 * 12 3 2 14 14 C 1.46509 * 120.00363 * 185.69192 * 12 3 2 15 15 C 1.36671 * 125.99514 * 174.38935 * 14 12 3 16 16 C 1.40331 * 106.70049 * 179.80295 * 15 14 12 17 17 C 1.35161 * 107.12721 * 0.37026 * 16 15 14 18 18 C 1.50704 * 125.61146 * 179.88476 * 17 16 15 19 19 N 1.46503 * 109.47175 * 89.71748 * 18 17 16 20 20 C 1.34944 * 126.03834 * 124.99899 * 19 18 17 21 21 C 1.35314 * 107.74513 * 179.77320 * 20 19 18 22 22 C 1.39862 * 107.92159 * 0.22943 * 21 20 19 23 23 N 1.30839 * 108.20460 * 359.97438 * 22 21 20 24 24 O 1.33965 * 108.78325 * 359.62213 * 17 16 15 25 25 H 1.09001 * 109.47178 * 300.00531 * 1 2 3 26 26 H 1.09002 * 109.47029 * 60.00110 * 1 2 3 27 27 H 1.09003 * 109.47543 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47178 * 239.99469 * 2 1 3 29 29 H 1.09002 * 109.47029 * 119.99890 * 2 1 3 30 30 H 0.96998 * 120.00016 * 179.97438 * 7 6 4 31 31 H 1.07995 * 126.64971 * 0.06589 * 15 14 12 32 32 H 1.08000 * 126.43619 * 180.27082 * 16 15 14 33 33 H 1.09006 * 109.46857 * 329.72056 * 18 17 16 34 34 H 1.08999 * 109.47105 * 209.71962 * 18 17 16 35 35 H 1.08001 * 126.12315 * 0.04228 * 20 19 18 36 36 H 1.08004 * 126.03408 * 180.21066 * 21 20 19 37 37 H 1.08006 * 125.89674 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3652 1.9843 -1.1785 5 1 2.0739 3.0068 -1.3680 6 6 3.0928 1.2807 -2.1316 7 7 3.6739 0.1472 -1.8095 8 14 3.2441 1.9469 -3.8702 9 1 3.8957 3.2808 -3.8342 10 1 4.0643 1.0167 -4.6871 11 1 1.8921 2.0725 -4.4716 12 6 2.1260 2.0579 1.1605 13 8 1.9171 1.4909 2.2174 14 6 2.4944 3.4759 1.1503 15 6 2.5336 4.3035 2.2372 16 6 2.9393 5.5632 1.7705 17 6 3.1198 5.4539 0.4354 18 6 3.5549 6.5649 -0.4852 19 7 5.0173 6.5833 -0.5712 20 6 5.7467 6.5179 -1.7046 21 6 7.0536 6.5685 -1.3575 22 6 7.1254 6.6629 0.0361 23 7 5.9053 6.6694 0.5087 24 8 2.8539 4.1939 0.0660 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.1813 -0.3438 -2.4746 31 1 2.3018 4.0383 3.2581 32 1 3.0793 6.4533 2.3659 33 1 3.2019 7.5195 -0.0947 34 1 3.1345 6.4003 -1.4773 35 1 5.3571 6.4433 -2.7092 36 1 7.8929 6.5405 -2.0366 37 1 8.0314 6.7214 0.6210 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068240721.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:56 Heat of formation + Delta-G solvation = 71.018781 kcal Electronic energy + Delta-G solvation = -23039.358122 eV Core-core repulsion = 19593.052902 eV Total energy + Delta-G solvation = -3446.305220 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.01706 -40.87192 -38.40023 -35.12387 -33.93230 -32.31731 -31.89986 -30.45301 -29.97427 -28.97123 -26.17655 -24.99143 -22.95811 -21.31472 -21.11618 -20.77585 -20.20280 -19.26942 -18.08093 -17.22283 -15.91439 -15.71493 -15.45443 -14.87708 -14.77706 -14.52789 -13.93819 -13.59520 -13.52499 -13.18582 -12.85943 -12.66983 -12.61807 -12.44498 -12.30503 -11.83298 -11.74046 -11.64493 -11.20796 -10.97894 -10.58850 -10.51672 -10.47916 -10.01029 -9.37557 -9.34966 -9.25194 -8.84578 -8.51761 -8.00134 -7.57039 -6.49038 -4.22864 1.65625 2.05345 2.56776 3.00142 3.05076 3.11003 3.12860 3.14611 3.32472 3.97257 4.25929 4.52736 4.71777 4.86236 4.95060 4.99642 5.15809 5.29442 5.51133 5.67039 5.82310 5.87520 6.11130 6.11647 6.24543 6.29920 6.31950 6.40415 6.51645 6.75005 6.76075 6.95482 6.96919 7.08426 7.26108 7.40629 7.62902 7.81776 7.84515 8.27125 8.91784 9.29665 9.72405 10.53319 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.006578 C = 0.005014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.254208 B = 4255.873234 C = 5582.590809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.112 3.888 3 N -0.415 5.415 4 C -0.337 4.337 5 H 0.099 0.901 6 C 0.047 3.953 7 N -0.857 5.857 8 Si 0.921 3.079 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.270 1.270 12 C 0.532 3.468 13 O -0.586 6.586 14 C 0.010 3.990 15 C -0.179 4.179 16 C -0.171 4.171 17 C -0.064 4.064 18 C 0.222 3.778 19 N -0.369 5.369 20 C 0.059 3.941 21 C -0.277 4.277 22 C 0.040 3.960 23 N -0.285 5.285 24 O -0.122 6.122 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.273 0.727 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.173 0.827 36 H 0.145 0.855 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.234 11.349 -2.771 11.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.011 4.011 3 N -0.131 5.131 4 C -0.464 4.464 5 H 0.117 0.883 6 C -0.160 4.160 7 N -0.493 5.493 8 Si 0.747 3.253 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.196 1.196 12 C 0.321 3.679 13 O -0.474 6.474 14 C -0.045 4.045 15 C -0.200 4.200 16 C -0.191 4.191 17 C -0.117 4.117 18 C 0.101 3.899 19 N -0.152 5.152 20 C -0.087 4.087 21 C -0.307 4.307 22 C -0.146 4.146 23 N -0.106 5.106 24 O -0.015 6.015 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.190 0.810 36 H 0.163 0.837 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.376 10.789 -1.666 10.924 hybrid contribution 0.797 0.220 -1.535 1.743 sum 1.172 11.009 -3.201 11.525 Atomic orbital electron populations 1.22097 0.97891 1.00474 1.01320 1.21406 0.91724 0.84171 1.03766 1.43422 1.52785 1.11950 1.04928 1.19604 1.34110 0.99358 0.93374 0.88335 1.25508 0.93786 0.96084 1.00601 1.69869 1.29112 1.15312 1.34971 0.86099 0.78598 0.79025 0.81620 1.19567 1.20658 1.19552 1.17078 0.82697 0.83326 0.84794 1.90712 1.57935 1.67629 1.31080 1.22580 1.04001 0.93489 0.84417 1.21749 1.06276 0.92408 0.99604 1.21361 1.05266 0.98974 0.93511 1.22314 1.08378 0.86061 0.94978 1.19877 0.74827 0.94944 1.00226 1.48805 1.05939 1.56303 1.04188 1.22609 0.92342 1.01150 0.92613 1.21470 0.96238 1.17197 0.95780 1.23870 0.95905 1.00349 0.94519 1.77388 0.99489 1.23264 1.10429 1.84568 1.64125 1.18119 1.34694 0.93460 0.92886 0.92991 0.87756 0.92378 0.91659 0.83146 0.83728 0.87023 0.87017 0.81025 0.83730 0.80281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 10.19 37.15 0.38 -2.85 16 2 C 0.11 2.70 5.60 -4.05 -0.02 2.67 16 3 N -0.41 -10.78 2.50 -116.36 -0.29 -11.07 16 4 C -0.34 -8.66 8.00 -15.02 -0.12 -8.79 16 5 H 0.10 2.48 5.88 -52.49 -0.31 2.17 16 6 C 0.05 1.19 5.05 -17.45 -0.09 1.11 16 7 N -0.86 -22.67 11.44 55.50 0.63 -22.04 16 8 Si 0.92 19.19 29.57 -169.99 -5.03 14.16 16 9 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 12 C 0.53 13.94 7.55 -12.93 -0.10 13.84 16 13 O -0.59 -16.19 16.52 5.15 0.09 -16.10 16 14 C 0.01 0.23 6.82 -36.82 -0.25 -0.02 16 15 C -0.18 -3.65 10.63 -39.36 -0.42 -4.07 16 16 C -0.17 -2.99 10.77 -39.89 -0.43 -3.42 16 17 C -0.06 -1.15 6.75 -35.40 -0.24 -1.38 16 18 C 0.22 2.96 7.04 -5.19 -0.04 2.92 16 19 N -0.37 -5.58 3.67 -62.54 -0.23 -5.81 16 20 C 0.06 0.79 11.45 -17.23 -0.20 0.59 16 21 C -0.28 -3.61 10.80 -40.02 -0.43 -4.05 16 22 C 0.04 0.56 12.02 -17.37 -0.21 0.35 16 23 N -0.28 -4.69 12.40 30.62 0.38 -4.31 16 24 O -0.12 -2.68 7.51 4.88 0.04 -2.64 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.10 2.60 5.70 -51.93 -0.30 2.31 16 29 H 0.06 1.44 7.54 -51.93 -0.39 1.05 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.15 2.87 8.06 -52.49 -0.42 2.45 16 32 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 33 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.11 1.23 8.07 -51.93 -0.42 0.81 16 35 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.18 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 325.95 15.07 4.91 4.91 Total: -1.00 -32.37 325.95 -6.02 -38.39 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -4.36 Total: 7.60 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.16 Total: -3.08 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.49 Total: -43.23 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.12 Total: -18.74 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.37 -6.02 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240721.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.407 kcal (2) G-P(sol) polarization free energy of solvation -32.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds