Wall clock time and date at job start Tue Mar 31 2020 06:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99795 * 2 1 4 4 H 1.48501 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47316 * 300.00038 * 3 2 1 6 6 H 1.48504 * 109.47419 * 59.99892 * 3 2 1 7 7 C 1.37875 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00068 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46840 * 179.97438 * 9 7 2 11 11 C 1.48720 * 111.01831 * 54.48842 * 10 9 7 12 12 C 1.54381 * 104.51692 * 158.96284 * 11 10 9 13 13 C 1.54257 * 105.14978 * 336.27274 * 12 11 10 14 14 C 1.48567 * 110.99718 * 169.99824 * 10 9 7 15 15 H 1.09004 * 110.50861 * 319.79003 * 14 10 9 16 16 C 1.50695 * 110.41156 * 82.17828 * 14 10 9 17 17 C 1.38251 * 119.94294 * 36.35391 * 16 14 10 18 18 C 1.38197 * 120.11266 * 179.77621 * 17 16 14 19 19 C 1.38706 * 120.06475 * 0.56163 * 18 17 16 20 20 C 1.38971 * 119.82115 * 359.62492 * 19 18 17 21 21 C 1.38202 * 119.94475 * 216.62608 * 16 14 10 22 22 O 1.36109 * 120.78375 * 180.26231 * 20 19 18 23 23 C 1.43178 * 116.71577 * 342.82042 * 22 20 19 24 24 C 1.53462 * 108.25196 * 46.16051 * 23 22 20 25 25 O 1.36107 * 119.39534 * 179.53691 * 19 18 17 26 26 H 0.96992 * 120.00130 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47369 * 59.99353 * 9 7 2 28 28 H 1.09000 * 109.46724 * 299.99250 * 9 7 2 29 29 H 1.09004 * 110.38960 * 40.24251 * 11 10 9 30 30 H 1.08996 * 110.50963 * 277.74694 * 11 10 9 31 31 H 1.09002 * 110.32526 * 217.32092 * 12 11 10 32 32 H 1.08998 * 110.32190 * 95.21733 * 12 11 10 33 33 H 1.08995 * 110.32672 * 118.84838 * 13 12 11 34 34 H 1.09013 * 110.32172 * 240.94943 * 13 12 11 35 35 H 1.07998 * 119.94607 * 0.03276 * 17 16 14 36 36 H 1.08005 * 119.96903 * 180.29437 * 18 17 16 37 37 H 1.08000 * 119.96118 * 359.94969 * 21 16 14 38 38 H 1.08996 * 109.70472 * 165.85202 * 23 22 20 39 39 H 1.09005 * 109.70550 * 286.46788 * 23 22 20 40 40 H 1.09001 * 109.71402 * 59.94790 * 24 23 22 41 41 H 1.08998 * 109.71128 * 180.58183 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 3.1653 -3.4970 1.1306 12 6 3.7084 -4.9285 1.3290 13 6 2.6235 -5.8560 0.7439 14 6 1.5135 -4.9080 0.2414 15 1 0.7404 -4.7913 1.0010 16 6 0.9158 -5.4308 -1.0393 17 6 1.5821 -5.2480 -2.2368 18 6 1.0394 -5.7301 -3.4128 19 6 -0.1813 -6.3885 -3.3962 20 6 -0.8529 -6.5688 -2.1929 21 6 -0.3002 -6.0871 -1.0156 22 8 -2.0493 -7.2167 -2.1532 23 6 -2.7470 -7.3566 -3.3956 24 6 -1.7461 -7.8296 -4.4584 25 8 -0.7078 -6.8494 -4.5636 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8904 29 1 2.6523 -3.1570 2.0302 30 1 3.9758 -2.8152 0.8733 31 1 3.8517 -5.1354 2.3895 32 1 4.6466 -5.0556 0.7890 33 1 3.0287 -6.4371 -0.0844 34 1 2.2355 -6.5195 1.5169 35 1 2.5303 -4.7313 -2.2528 36 1 1.5642 -5.5902 -4.3464 37 1 -0.8203 -6.2254 -0.0792 38 1 -3.5444 -8.0920 -3.2885 39 1 -3.1695 -6.3959 -3.6902 40 1 -1.3189 -8.7872 -4.1608 41 1 -2.2514 -7.9343 -5.4185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026480729.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:00 Heat of formation + Delta-G solvation = -42.305282 kcal Electronic energy + Delta-G solvation = -23160.401602 eV Core-core repulsion = 19812.722626 eV Total energy + Delta-G solvation = -3347.678977 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.07416 -38.87487 -37.10861 -36.81008 -33.11318 -31.47026 -30.88816 -30.60591 -28.99649 -26.79447 -26.21572 -24.57731 -22.73079 -22.34767 -21.13059 -20.06749 -19.45796 -18.41257 -17.09689 -16.84228 -16.18473 -15.43705 -15.28067 -15.08889 -14.82855 -14.30879 -14.18213 -13.97909 -13.61087 -13.42952 -12.99761 -12.84499 -12.68706 -12.22454 -11.94172 -11.65560 -11.52190 -11.06724 -11.02684 -10.90948 -10.68955 -10.62301 -10.47860 -10.39589 -10.27580 -10.07323 -9.79255 -9.08257 -8.45482 -8.30225 -7.69106 -7.40025 -6.01886 -4.03591 1.59135 1.65811 3.11835 3.30393 3.31345 3.38859 3.43059 4.01241 4.22616 4.43516 4.72624 4.81164 4.82243 4.88655 5.15833 5.18864 5.27328 5.34453 5.36751 5.52488 5.54108 5.60481 5.67734 5.83638 5.92337 6.06271 6.15182 6.25032 6.29843 6.40092 6.46097 6.55026 6.69686 6.72897 6.95690 7.01637 7.07637 7.28025 7.38262 7.60682 7.76216 8.01168 8.19909 8.50412 9.04356 9.60891 11.09425 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016877 B = 0.004541 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.694675 B = 6164.651021 C = 7095.084915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.184 3.816 10 N -0.501 5.501 11 C 0.050 3.950 12 C -0.128 4.128 13 C -0.112 4.112 14 C 0.097 3.903 15 H 0.053 0.947 16 C -0.049 4.049 17 C -0.076 4.076 18 C -0.119 4.119 19 C 0.038 3.962 20 C 0.042 3.958 21 C -0.110 4.110 22 O -0.311 6.311 23 C 0.021 3.979 24 C 0.022 3.978 25 O -0.311 6.311 26 H 0.260 0.740 27 H 0.034 0.966 28 H -0.008 1.008 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.144 0.856 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.063 -16.651 -4.587 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.059 3.941 10 N -0.225 5.225 11 C -0.078 4.078 12 C -0.166 4.166 13 C -0.150 4.150 14 C -0.012 4.012 15 H 0.071 0.929 16 C -0.050 4.050 17 C -0.095 4.095 18 C -0.137 4.137 19 C -0.006 4.006 20 C -0.002 4.002 21 C -0.130 4.130 22 O -0.226 6.226 23 C -0.055 4.055 24 C -0.054 4.054 25 O -0.226 6.226 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.010 0.990 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.162 0.838 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.135 0.865 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.998 -16.521 -5.134 17.329 hybrid contribution -0.502 0.980 0.607 1.257 sum -1.500 -15.541 -4.527 16.256 Atomic orbital electron populations 1.69976 1.06074 1.26622 1.50877 1.24984 0.94820 0.99299 0.95373 0.86475 0.80082 0.83568 0.77497 1.19652 1.21017 1.21148 1.21226 0.93447 0.90039 1.50288 0.91802 1.19871 0.90517 0.87433 0.96325 1.65421 1.15846 1.01197 1.40057 1.22861 0.96768 0.94842 0.93377 1.22376 0.98448 0.95975 0.99771 1.22308 0.95555 0.97209 0.99938 1.21482 0.95238 0.92301 0.92207 0.92871 1.19481 0.93205 0.96702 0.95630 1.20903 1.01021 0.97365 0.90165 1.20463 0.92818 1.00921 0.99525 1.18855 0.94997 1.02393 0.84352 1.18714 0.86879 1.00676 0.93919 1.20249 0.96387 1.00085 0.96236 1.86275 1.31015 1.73432 1.31840 1.23561 0.94680 1.03179 0.84071 1.23542 0.89006 0.91381 1.01458 1.86290 1.52100 1.56464 1.27701 0.92999 0.94838 0.99037 0.94192 0.90306 0.92250 0.91657 0.91334 0.92040 0.83835 0.85175 0.85335 0.86530 0.90639 0.90884 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.29 8.58 -34.44 -0.30 -14.58 16 8 H 0.06 1.75 6.64 -52.49 -0.35 1.40 16 9 C 0.18 4.82 4.69 -4.97 -0.02 4.80 16 10 N -0.50 -10.59 4.32 -224.78 -0.97 -11.56 16 11 C 0.05 0.94 5.55 -2.09 -0.01 0.93 16 12 C -0.13 -1.89 6.99 -25.35 -0.18 -2.06 16 13 C -0.11 -1.65 6.54 -25.35 -0.17 -1.82 16 14 C 0.10 1.75 2.47 -67.22 -0.17 1.58 16 15 H 0.05 1.01 7.73 -51.93 -0.40 0.61 16 16 C -0.05 -0.87 4.75 -104.63 -0.50 -1.37 16 17 C -0.08 -1.31 9.28 -39.59 -0.37 -1.68 16 18 C -0.12 -1.92 9.96 -39.42 -0.39 -2.31 16 19 C 0.04 0.62 6.49 -39.14 -0.25 0.37 16 20 C 0.04 0.70 6.49 -39.14 -0.25 0.45 16 21 C -0.11 -1.88 9.60 -39.42 -0.38 -2.26 16 22 O -0.31 -4.59 10.42 -32.87 -0.34 -4.93 16 23 C 0.02 0.22 7.26 37.40 0.27 0.49 16 24 C 0.02 0.22 7.26 37.40 0.27 0.49 16 25 O -0.31 -4.48 10.42 -32.87 -0.34 -4.82 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 28 H -0.01 -0.23 7.88 -51.93 -0.41 -0.64 16 29 H 0.04 0.81 8.00 -51.93 -0.42 0.39 16 30 H 0.08 1.54 7.22 -51.93 -0.37 1.17 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.97 7.81 -51.93 -0.41 0.56 16 34 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.14 2.50 7.63 -52.49 -0.40 2.10 16 36 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.13 2.03 8.05 -52.49 -0.42 1.60 16 38 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -31.84 333.14 -9.58 -41.42 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.12 Total: -0.15 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.54 Total: -15.45 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.24 Total: -37.76 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.68 Total: -9.75 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.84 -9.58 -41.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026480729.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.886 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds