Wall clock time and date at job start Tue Mar 31 2020 06:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99795 * 2 1 4 4 H 1.48501 * 109.47241 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47316 * 300.00038 * 3 2 1 6 6 H 1.48504 * 109.47419 * 59.99892 * 3 2 1 7 7 C 1.37875 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00037 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00068 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46840 * 179.97438 * 9 7 2 11 11 C 1.48720 * 111.01831 * 54.48842 * 10 9 7 12 12 C 1.54381 * 104.51692 * 158.96284 * 11 10 9 13 13 C 1.54257 * 105.14978 * 336.27274 * 12 11 10 14 14 C 1.48567 * 110.99718 * 169.99824 * 10 9 7 15 15 H 1.09004 * 110.50861 * 319.79003 * 14 10 9 16 16 C 1.50695 * 110.41156 * 82.17828 * 14 10 9 17 17 C 1.38251 * 119.94294 * 36.35391 * 16 14 10 18 18 C 1.38197 * 120.11266 * 179.77621 * 17 16 14 19 19 C 1.38706 * 120.06475 * 0.56163 * 18 17 16 20 20 C 1.38971 * 119.82115 * 359.62492 * 19 18 17 21 21 C 1.38202 * 119.94475 * 216.62608 * 16 14 10 22 22 O 1.36109 * 120.78375 * 180.26231 * 20 19 18 23 23 C 1.43178 * 116.71577 * 342.82042 * 22 20 19 24 24 C 1.53462 * 108.25196 * 46.16051 * 23 22 20 25 25 O 1.36107 * 119.39534 * 179.53691 * 19 18 17 26 26 H 0.96992 * 120.00130 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47369 * 59.99353 * 9 7 2 28 28 H 1.09000 * 109.46724 * 299.99250 * 9 7 2 29 29 H 1.09004 * 110.38960 * 40.24251 * 11 10 9 30 30 H 1.08996 * 110.50963 * 277.74694 * 11 10 9 31 31 H 1.09002 * 110.32526 * 217.32092 * 12 11 10 32 32 H 1.08998 * 110.32190 * 95.21733 * 12 11 10 33 33 H 1.08995 * 110.32672 * 118.84838 * 13 12 11 34 34 H 1.09013 * 110.32172 * 240.94943 * 13 12 11 35 35 H 1.07998 * 119.94607 * 0.03276 * 17 16 14 36 36 H 1.08005 * 119.96903 * 180.29437 * 18 17 16 37 37 H 1.08000 * 119.96118 * 359.94969 * 21 16 14 38 38 H 1.08996 * 109.70472 * 165.85202 * 23 22 20 39 39 H 1.09005 * 109.70550 * 286.46788 * 23 22 20 40 40 H 1.09001 * 109.71402 * 59.94790 * 24 23 22 41 41 H 1.08998 * 109.71128 * 180.58183 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 3.1653 -3.4970 1.1306 12 6 3.7084 -4.9285 1.3290 13 6 2.6235 -5.8560 0.7439 14 6 1.5135 -4.9080 0.2414 15 1 0.7404 -4.7913 1.0010 16 6 0.9158 -5.4308 -1.0393 17 6 1.5821 -5.2480 -2.2368 18 6 1.0394 -5.7301 -3.4128 19 6 -0.1813 -6.3885 -3.3962 20 6 -0.8529 -6.5688 -2.1929 21 6 -0.3002 -6.0871 -1.0156 22 8 -2.0493 -7.2167 -2.1532 23 6 -2.7470 -7.3566 -3.3956 24 6 -1.7461 -7.8296 -4.4584 25 8 -0.7078 -6.8494 -4.5636 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8904 29 1 2.6523 -3.1570 2.0302 30 1 3.9758 -2.8152 0.8733 31 1 3.8517 -5.1354 2.3895 32 1 4.6466 -5.0556 0.7890 33 1 3.0287 -6.4371 -0.0844 34 1 2.2355 -6.5195 1.5169 35 1 2.5303 -4.7313 -2.2528 36 1 1.5642 -5.5902 -4.3464 37 1 -0.8203 -6.2254 -0.0792 38 1 -3.5444 -8.0920 -3.2885 39 1 -3.1695 -6.3959 -3.6902 40 1 -1.3189 -8.7872 -4.1608 41 1 -2.2514 -7.9343 -5.4185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026480729.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:00 Heat of formation + Delta-G solvation = -62.330965 kcal Electronic energy + Delta-G solvation = -23161.269981 eV Core-core repulsion = 19812.722626 eV Total energy + Delta-G solvation = -3348.547356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.19776 -40.29491 -38.20696 -38.13643 -35.16846 -32.72293 -32.57596 -31.79878 -30.15074 -28.23471 -28.06978 -25.66394 -24.53142 -23.67973 -22.42271 -21.54906 -20.77945 -19.55351 -18.39448 -18.17108 -17.94775 -16.93714 -16.74340 -16.36443 -15.93232 -15.87588 -15.38627 -15.27847 -14.82668 -14.68949 -14.57820 -14.50888 -14.00665 -13.73871 -13.53638 -13.19802 -12.90562 -12.74389 -12.52388 -12.38889 -12.18224 -11.97152 -11.91103 -11.84580 -11.70428 -11.42215 -11.27638 -11.14494 -10.64821 -9.57277 -9.18315 -8.94030 -8.21866 -6.32222 0.29828 0.36970 1.39856 1.40729 1.54211 2.06606 2.30156 2.39605 2.71739 3.11834 3.31708 3.39089 3.69633 3.81083 3.90380 3.96637 4.08800 4.19560 4.22742 4.32380 4.39766 4.44773 4.50850 4.59319 4.64503 4.79485 4.87913 4.92344 5.01868 5.06515 5.15264 5.17048 5.18493 5.30471 5.32586 5.47890 5.58712 5.71200 5.74178 5.92883 5.98532 6.27078 6.44463 6.53460 6.85472 7.38199 8.90576 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016877 B = 0.004541 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.694675 B = 6164.651021 C = 7095.084915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.525 4.525 8 H 0.068 0.932 9 C 0.206 3.794 10 N -0.504 5.504 11 C 0.044 3.956 12 C -0.114 4.114 13 C -0.103 4.103 14 C 0.094 3.906 15 H 0.036 0.964 16 C -0.064 4.064 17 C -0.088 4.088 18 C -0.123 4.123 19 C 0.036 3.964 20 C 0.039 3.961 21 C -0.124 4.124 22 O -0.324 6.324 23 C 0.012 3.988 24 C 0.016 3.984 25 O -0.323 6.323 26 H 0.263 0.737 27 H -0.004 1.004 28 H -0.042 1.042 29 H 0.021 0.979 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.148 0.852 37 H 0.132 0.868 38 H 0.157 0.843 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.250 -17.910 -5.223 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.204 1.204 7 C -0.563 4.563 8 H 0.086 0.914 9 C 0.079 3.921 10 N -0.228 5.228 11 C -0.084 4.084 12 C -0.152 4.152 13 C -0.141 4.141 14 C -0.015 4.015 15 H 0.054 0.946 16 C -0.065 4.065 17 C -0.106 4.106 18 C -0.141 4.141 19 C -0.009 4.009 20 C -0.006 4.006 21 C -0.144 4.144 22 O -0.240 6.240 23 C -0.063 4.063 24 C -0.058 4.058 25 O -0.238 6.238 26 H 0.072 0.928 27 H 0.014 0.986 28 H -0.024 1.024 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.155 0.845 36 H 0.166 0.834 37 H 0.150 0.850 38 H 0.175 0.825 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.178 -17.811 -5.774 18.725 hybrid contribution -0.891 1.271 0.733 1.717 sum -1.069 -16.540 -5.041 17.324 Atomic orbital electron populations 1.70118 1.07926 1.27774 1.51846 1.25949 0.95676 1.03355 0.94721 0.85326 0.79139 0.78489 0.77629 1.18323 1.20575 1.20442 1.21558 0.93761 0.90986 1.50016 0.91372 1.19416 0.90504 0.89310 0.92910 1.65305 1.15166 1.00923 1.41388 1.22918 0.95809 0.97942 0.91682 1.22328 0.98742 0.92375 1.01745 1.22304 0.94163 0.96705 1.00921 1.21561 0.95964 0.91556 0.92400 0.94559 1.19499 0.93858 0.97515 0.95592 1.20879 1.01090 0.98029 0.90619 1.20657 0.93151 1.00511 0.99779 1.18943 0.94934 1.02074 0.84934 1.18794 0.87648 1.00417 0.93768 1.20355 0.96377 1.00656 0.96970 1.86251 1.30351 1.72886 1.34471 1.23972 0.95332 1.04293 0.82697 1.23955 0.87945 0.90569 1.03376 1.86266 1.53264 1.57472 1.26792 0.92785 0.98555 1.02419 0.96043 0.91083 0.89717 0.89890 0.90209 0.89715 0.84482 0.83447 0.84975 0.82514 0.91117 0.89810 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.04 13.29 21.45 0.28 -57.76 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.53 -30.21 8.58 25.60 0.22 -29.99 16 8 H 0.07 3.78 6.64 -2.91 -0.02 3.76 16 9 C 0.21 11.37 4.69 85.56 0.40 11.77 16 10 N -0.50 -22.05 4.32 -865.09 -3.74 -25.79 16 11 C 0.04 1.70 5.55 86.42 0.48 2.18 16 12 C -0.11 -3.14 6.99 31.49 0.22 -2.92 16 13 C -0.10 -2.89 6.54 31.49 0.21 -2.68 16 14 C 0.09 3.49 2.47 44.31 0.11 3.60 16 15 H 0.04 1.46 7.73 -2.39 -0.02 1.44 16 16 C -0.06 -2.33 4.75 -19.87 -0.09 -2.42 16 17 C -0.09 -3.10 9.28 22.26 0.21 -2.89 16 18 C -0.12 -3.96 9.96 22.37 0.22 -3.74 16 19 C 0.04 1.16 6.49 22.56 0.15 1.30 16 20 C 0.04 1.28 6.49 22.56 0.15 1.42 16 21 C -0.12 -4.35 9.60 22.37 0.21 -4.14 16 22 O -0.32 -9.30 10.42 -82.56 -0.86 -10.16 16 23 C 0.01 0.22 7.26 72.14 0.52 0.74 16 24 C 0.02 0.28 7.26 72.14 0.52 0.80 16 25 O -0.32 -8.81 10.42 -82.55 -0.86 -9.67 16 26 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 27 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 28 H -0.04 -2.53 7.88 -2.39 -0.02 -2.55 16 29 H 0.02 0.88 8.00 -2.38 -0.02 0.87 16 30 H 0.07 2.79 7.22 -2.39 -0.02 2.78 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 33 H 0.08 2.09 7.81 -2.39 -0.02 2.07 16 34 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.14 4.91 7.63 -2.91 -0.02 4.89 16 36 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 37 H 0.13 4.35 8.05 -2.91 -0.02 4.32 16 38 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.16 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -71.72 333.14 1.85 -69.87 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.01 Total: 13.01 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 3.99 Total: -26.44 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -3.46 Total: -83.55 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.72 Total: -19.83 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -71.72 1.85 -69.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026480729.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.537 kcal (2) G-P(sol) polarization free energy of solvation -71.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds