Wall clock time and date at job start Tue Mar 31 2020 06:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36887 * 126.39910 * 2 1 4 4 C 1.34672 * 106.81700 * 179.97438 * 3 2 1 5 5 N 1.34127 * 108.01948 * 0.22851 * 4 3 2 6 6 C 1.30502 * 109.25683 * 359.61488 * 5 4 3 7 7 C 1.50700 * 125.64425 * 180.14781 * 6 5 4 8 8 H 1.09004 * 109.46516 * 165.27535 * 7 6 5 9 9 N 1.46894 * 109.47494 * 45.27872 * 7 6 5 10 10 C 1.46902 * 111.00288 * 84.99495 * 9 7 6 11 11 C 1.50699 * 109.47195 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99992 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99908 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00078 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99995 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46982 * 59.99724 * 15 13 11 17 17 H 1.48500 * 109.46999 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47116 * 299.99911 * 15 13 11 19 19 C 1.50696 * 109.47349 * 285.27191 * 7 6 5 20 20 C 1.38251 * 119.97165 * 79.72869 * 19 7 6 21 21 C 1.38203 * 120.02185 * 179.76799 * 20 19 7 22 22 C 1.38456 * 119.97713 * 0.50939 * 21 20 19 23 23 F 1.35098 * 120.02821 * 179.76925 * 22 21 20 24 24 C 1.38470 * 119.94569 * 359.74369 * 22 21 20 25 25 C 1.38196 * 119.97584 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.47221 * 90.02476 * 1 2 3 27 27 H 1.09003 * 109.47097 * 210.02578 * 1 2 3 28 28 H 1.09001 * 109.46668 * 330.02549 * 1 2 3 29 29 H 1.07997 * 126.58796 * 359.97438 * 3 2 1 30 30 H 1.08002 * 125.98510 * 179.97438 * 4 3 2 31 31 H 1.00906 * 110.99586 * 321.04287 * 9 7 6 32 32 H 1.09001 * 109.47175 * 300.00361 * 10 9 7 33 33 H 1.09000 * 109.46779 * 60.00202 * 10 9 7 34 34 H 0.96998 * 120.00127 * 180.02562 * 14 13 11 35 35 H 1.07994 * 119.98681 * 0.02562 * 20 19 7 36 36 H 1.08001 * 120.00642 * 180.25538 * 21 20 19 37 37 H 1.08005 * 120.00738 * 179.97438 * 24 22 21 38 38 H 1.07999 * 119.98808 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 0.0006 5 7 3.5095 -0.6903 -0.0042 6 6 2.2663 -1.0870 0.0006 7 6 1.8019 -2.5206 0.0008 8 1 0.7454 -2.5602 0.2665 9 7 2.5822 -3.2881 0.9806 10 6 2.0040 -3.1665 2.3256 11 6 2.8298 -3.9647 3.3014 12 1 3.6971 -4.5082 2.9568 13 6 2.4775 -4.0018 4.6339 14 7 1.4211 -3.3403 5.0534 15 14 3.5007 -4.9917 5.8433 16 1 4.8924 -4.4737 5.8544 17 1 2.9163 -4.8687 7.2029 18 1 3.5071 -6.4192 5.4340 19 6 1.9972 -3.1122 -1.3713 20 6 3.2492 -3.5482 -1.7636 21 6 3.4286 -4.0953 -3.0200 22 6 2.3562 -4.1970 -3.8898 23 9 2.5313 -4.7274 -5.1199 24 6 1.1038 -3.7552 -3.4977 25 6 0.9258 -3.2128 -2.2391 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 1.9613 2.1345 -0.0004 30 1 4.4369 1.2611 0.0003 31 1 3.5499 -3.0023 0.9758 32 1 1.9996 -2.1187 2.6259 33 1 0.9825 -3.5465 2.3176 34 1 1.1735 -3.3662 5.9909 35 1 4.0864 -3.4651 -1.0865 36 1 4.4058 -4.4396 -3.3246 37 1 0.2666 -3.8337 -4.1755 38 1 -0.0510 -2.8685 -1.9329 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028658076.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:21 Heat of formation + Delta-G solvation = 45.854830 kcal Electronic energy + Delta-G solvation = -22495.203177 eV Core-core repulsion = 19060.179556 eV Total energy + Delta-G solvation = -3435.023621 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.79280 -41.88678 -39.01639 -35.66937 -33.83318 -32.82096 -31.03778 -30.61900 -29.10621 -27.04374 -26.56699 -24.50262 -23.00434 -21.64770 -21.63029 -20.88109 -19.32464 -17.59197 -17.19738 -16.57665 -16.12551 -15.66981 -15.48000 -15.10946 -14.77724 -14.50069 -14.18970 -13.99076 -13.46328 -13.31245 -13.22949 -12.97428 -12.69727 -12.64115 -12.40527 -12.17407 -11.68649 -11.59817 -11.24380 -10.80546 -10.72599 -10.71374 -10.00194 -9.69726 -9.36725 -9.27194 -8.94685 -8.55408 -8.42823 -8.12341 -7.53915 -6.05837 -4.07081 1.26396 1.40845 2.27557 2.97126 3.34421 3.37421 3.41139 3.43063 3.74265 4.37279 4.41434 4.69124 4.73567 4.79478 4.93179 4.97903 5.08232 5.09474 5.28947 5.31052 5.34836 5.47797 5.55515 5.63747 5.68939 5.94032 6.04300 6.16285 6.23530 6.42732 6.48941 6.74844 6.98422 7.03023 7.10375 7.33945 7.38416 7.71837 8.04526 8.27472 8.36469 8.52343 9.00548 9.57590 11.05487 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.005099 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.355770 B = 5489.935492 C = 6770.069588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.456 5.456 3 C -0.068 4.068 4 C -0.027 4.027 5 N -0.483 5.483 6 C 0.197 3.803 7 C 0.209 3.791 8 H 0.092 0.908 9 N -0.663 5.663 10 C 0.196 3.804 11 C -0.512 4.512 12 H 0.063 0.937 13 C 0.058 3.942 14 N -0.899 5.899 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.275 1.275 19 C -0.064 4.064 20 C -0.047 4.047 21 C -0.156 4.156 22 C 0.088 3.912 23 F -0.147 7.147 24 C -0.159 4.159 25 C -0.089 4.089 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.169 0.831 30 H 0.166 0.834 31 H 0.349 0.651 32 H -0.012 1.012 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.896 6.475 -15.041 16.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.138 5.138 3 C -0.201 4.201 4 C -0.175 4.175 5 N -0.201 5.201 6 C -0.068 4.068 7 C 0.095 3.905 8 H 0.110 0.890 9 N -0.294 5.294 10 C 0.069 3.931 11 C -0.551 4.551 12 H 0.082 0.918 13 C -0.144 4.144 14 N -0.539 5.539 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.066 4.066 20 C -0.065 4.065 21 C -0.175 4.175 22 C 0.068 3.932 23 F -0.125 7.125 24 C -0.177 4.177 25 C -0.108 4.108 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.187 0.813 30 H 0.183 0.817 31 H 0.168 0.832 32 H 0.005 0.995 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.787 5.378 -15.020 16.195 hybrid contribution -0.053 1.109 0.862 1.405 sum -2.840 6.486 -14.159 15.830 Atomic orbital electron populations 1.22056 0.77099 1.05020 1.03192 1.45317 1.07416 1.06664 1.54445 1.22609 0.91552 0.92363 1.13582 1.22217 0.96194 0.91303 1.07795 1.70077 1.18441 1.11799 1.19801 1.24470 0.86249 0.91668 1.04416 1.18897 0.99172 0.81210 0.91190 0.89031 1.60995 1.06541 1.53549 1.08315 1.19607 0.95724 0.95233 0.82502 1.21082 1.12117 1.29808 0.92048 0.91834 1.24953 0.95326 0.95768 0.98340 1.69939 1.25724 1.42310 1.15915 0.86526 0.80319 0.80608 0.79772 1.20192 1.21381 1.20079 1.19738 0.93606 0.98570 0.94642 1.20911 0.97657 0.93723 0.94216 1.21149 0.98468 1.03313 0.94587 1.17713 0.94942 0.99621 0.80882 1.91463 1.96205 1.84266 1.40615 1.20956 0.95957 1.02933 0.97894 1.20803 0.98694 0.98642 0.92637 0.90654 0.89186 0.89675 0.81348 0.81656 0.83171 0.99460 0.95467 0.92890 0.84270 0.84958 0.85167 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 10.93 59.85 0.65 1.37 16 2 N -0.46 -6.67 3.15 -121.27 -0.38 -7.05 16 3 C -0.07 -0.94 11.58 -16.56 -0.19 -1.13 16 4 C -0.03 -0.42 11.87 -17.81 -0.21 -0.63 16 5 N -0.48 -8.89 10.68 -10.81 -0.12 -9.00 16 6 C 0.20 3.41 6.43 -155.42 -1.00 2.41 16 7 C 0.21 3.62 2.55 -70.02 -0.18 3.45 16 8 H 0.09 1.52 6.26 -51.93 -0.32 1.20 16 9 N -0.66 -14.02 5.69 -110.46 -0.63 -14.65 16 10 C 0.20 5.01 5.23 -4.98 -0.03 4.98 16 11 C -0.51 -14.40 9.32 -34.44 -0.32 -14.72 16 12 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 15 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C -0.06 -0.99 4.94 -104.62 -0.52 -1.50 16 20 C -0.05 -0.72 9.32 -39.59 -0.37 -1.08 16 21 C -0.16 -2.16 10.03 -39.51 -0.40 -2.55 16 22 C 0.09 1.20 7.30 -39.42 -0.29 0.91 16 23 F -0.15 -2.01 17.27 2.25 0.04 -1.97 16 24 C -0.16 -1.98 10.03 -39.51 -0.40 -2.37 16 25 C -0.09 -1.16 9.67 -39.59 -0.38 -1.54 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.97 6.92 -51.93 -0.36 0.61 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.35 7.55 7.37 -39.29 -0.29 7.26 16 32 H -0.01 -0.35 8.00 -51.93 -0.42 -0.76 16 33 H 0.03 0.73 8.06 -51.93 -0.42 0.32 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.14 2.21 7.25 -52.49 -0.38 1.83 16 36 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 38 H 0.13 1.32 8.04 -52.49 -0.42 0.90 16 LS Contribution 332.11 15.07 5.00 5.00 Total: -1.00 -32.50 332.11 -8.78 -41.28 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.69 Total: 6.35 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -3.72 Total: -10.88 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.39 Total: -56.48 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.50 -8.78 -41.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028658076.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.139 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds