Wall clock time and date at job start Tue Mar 31 2020 06:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36887 * 126.39910 * 2 1 4 4 C 1.34672 * 106.81700 * 179.97438 * 3 2 1 5 5 N 1.34127 * 108.01948 * 0.22851 * 4 3 2 6 6 C 1.30502 * 109.25683 * 359.61488 * 5 4 3 7 7 C 1.50700 * 125.64425 * 180.14781 * 6 5 4 8 8 H 1.09004 * 109.46516 * 165.27535 * 7 6 5 9 9 N 1.46894 * 109.47494 * 45.27872 * 7 6 5 10 10 C 1.46902 * 111.00288 * 84.99495 * 9 7 6 11 11 C 1.50699 * 109.47195 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99992 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99908 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00078 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99995 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46982 * 59.99724 * 15 13 11 17 17 H 1.48500 * 109.46999 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47116 * 299.99911 * 15 13 11 19 19 C 1.50696 * 109.47349 * 285.27191 * 7 6 5 20 20 C 1.38251 * 119.97165 * 79.72869 * 19 7 6 21 21 C 1.38203 * 120.02185 * 179.76799 * 20 19 7 22 22 C 1.38456 * 119.97713 * 0.50939 * 21 20 19 23 23 F 1.35098 * 120.02821 * 179.76925 * 22 21 20 24 24 C 1.38470 * 119.94569 * 359.74369 * 22 21 20 25 25 C 1.38196 * 119.97584 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.47221 * 90.02476 * 1 2 3 27 27 H 1.09003 * 109.47097 * 210.02578 * 1 2 3 28 28 H 1.09001 * 109.46668 * 330.02549 * 1 2 3 29 29 H 1.07997 * 126.58796 * 359.97438 * 3 2 1 30 30 H 1.08002 * 125.98510 * 179.97438 * 4 3 2 31 31 H 1.00906 * 110.99586 * 321.04287 * 9 7 6 32 32 H 1.09001 * 109.47175 * 300.00361 * 10 9 7 33 33 H 1.09000 * 109.46779 * 60.00202 * 10 9 7 34 34 H 0.96998 * 120.00127 * 180.02562 * 14 13 11 35 35 H 1.07994 * 119.98681 * 0.02562 * 20 19 7 36 36 H 1.08001 * 120.00642 * 180.25538 * 21 20 19 37 37 H 1.08005 * 120.00738 * 179.97438 * 24 22 21 38 38 H 1.07999 * 119.98808 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6504 0.0006 5 7 3.5095 -0.6903 -0.0042 6 6 2.2663 -1.0870 0.0006 7 6 1.8019 -2.5206 0.0008 8 1 0.7454 -2.5602 0.2665 9 7 2.5822 -3.2881 0.9806 10 6 2.0040 -3.1665 2.3256 11 6 2.8298 -3.9647 3.3014 12 1 3.6971 -4.5082 2.9568 13 6 2.4775 -4.0018 4.6339 14 7 1.4211 -3.3403 5.0534 15 14 3.5007 -4.9917 5.8433 16 1 4.8924 -4.4737 5.8544 17 1 2.9163 -4.8687 7.2029 18 1 3.5071 -6.4192 5.4340 19 6 1.9972 -3.1122 -1.3713 20 6 3.2492 -3.5482 -1.7636 21 6 3.4286 -4.0953 -3.0200 22 6 2.3562 -4.1970 -3.8898 23 9 2.5313 -4.7274 -5.1199 24 6 1.1038 -3.7552 -3.4977 25 6 0.9258 -3.2128 -2.2391 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 1.9613 2.1345 -0.0004 30 1 4.4369 1.2611 0.0003 31 1 3.5499 -3.0023 0.9758 32 1 1.9996 -2.1187 2.6259 33 1 0.9825 -3.5465 2.3176 34 1 1.1735 -3.3662 5.9909 35 1 4.0864 -3.4651 -1.0865 36 1 4.4058 -4.4396 -3.3246 37 1 0.2666 -3.8337 -4.1755 38 1 -0.0510 -2.8685 -1.9329 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028658076.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:21 Heat of formation + Delta-G solvation = 26.166217 kcal Electronic energy + Delta-G solvation = -22496.056939 eV Core-core repulsion = 19060.179556 eV Total energy + Delta-G solvation = -3435.877384 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.86020 -43.05311 -40.14426 -37.24807 -34.92093 -34.81613 -32.28928 -31.99496 -30.27120 -28.56030 -27.82341 -25.99263 -24.30910 -23.31258 -22.78916 -22.06767 -20.58542 -18.85700 -18.54943 -18.13010 -17.28912 -16.99529 -16.63394 -16.54521 -16.20041 -15.91085 -15.47581 -15.19272 -14.79202 -14.42310 -14.34477 -14.30904 -14.15914 -13.76073 -13.68574 -13.49494 -13.30369 -12.93990 -12.81203 -12.66310 -12.43355 -12.03258 -11.86793 -11.35269 -10.92025 -10.67702 -10.50913 -10.00335 -9.60845 -9.40240 -9.18429 -8.23256 -6.32967 0.15641 0.34954 1.13528 1.41043 1.44204 1.51899 1.94198 2.21146 2.39903 2.63377 3.10863 3.31023 3.39679 3.50715 3.78749 3.95219 3.96050 3.98308 4.09596 4.19960 4.38761 4.41463 4.54491 4.58458 4.64866 4.79940 4.97696 5.03353 5.04765 5.17308 5.23596 5.31934 5.37330 5.56105 5.65372 5.87733 5.95457 5.99003 6.23538 6.37730 6.59578 6.84160 7.19514 7.36983 8.88010 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.005099 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.355770 B = 5489.935492 C = 6770.069588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.457 5.457 3 C -0.051 4.051 4 C -0.061 4.061 5 N -0.518 5.518 6 C 0.170 3.830 7 C 0.214 3.786 8 H 0.094 0.906 9 N -0.662 5.662 10 C 0.218 3.782 11 C -0.536 4.536 12 H 0.061 0.939 13 C 0.007 3.993 14 N -0.931 5.931 15 Si 0.968 3.032 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.267 1.267 19 C -0.079 4.079 20 C -0.063 4.063 21 C -0.159 4.159 22 C 0.080 3.920 23 F -0.146 7.146 24 C -0.149 4.149 25 C -0.085 4.085 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.211 0.789 30 H 0.184 0.816 31 H 0.343 0.657 32 H -0.045 1.045 33 H 0.009 0.991 34 H 0.265 0.735 35 H 0.123 0.877 36 H 0.146 0.854 37 H 0.161 0.839 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.800 6.911 -15.983 17.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.139 5.139 3 C -0.185 4.185 4 C -0.208 4.208 5 N -0.237 5.237 6 C -0.095 4.095 7 C 0.101 3.899 8 H 0.112 0.888 9 N -0.292 5.292 10 C 0.091 3.909 11 C -0.574 4.574 12 H 0.079 0.921 13 C -0.192 4.192 14 N -0.571 5.571 15 Si 0.793 3.207 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.192 1.192 19 C -0.080 4.080 20 C -0.082 4.082 21 C -0.178 4.178 22 C 0.061 3.939 23 F -0.125 7.125 24 C -0.168 4.168 25 C -0.104 4.104 26 H 0.123 0.877 27 H 0.099 0.901 28 H 0.126 0.874 29 H 0.228 0.772 30 H 0.201 0.799 31 H 0.162 0.838 32 H -0.028 1.028 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.164 0.836 37 H 0.179 0.821 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.711 5.811 -15.990 17.414 hybrid contribution 0.197 1.053 1.076 1.518 sum -3.514 6.864 -14.914 16.790 Atomic orbital electron populations 1.22390 0.74677 1.05737 1.05334 1.45574 1.09007 1.06092 1.53217 1.23260 0.90783 0.93740 1.10692 1.22721 0.98133 0.90714 1.09272 1.69982 1.19601 1.13560 1.20572 1.24207 0.86676 0.92156 1.06441 1.18821 0.98402 0.81573 0.91133 0.88773 1.60858 1.06429 1.55161 1.06750 1.19159 0.94588 0.92600 0.84569 1.21456 1.12483 1.30298 0.93182 0.92093 1.25844 0.96431 0.96699 1.00181 1.70053 1.27123 1.43408 1.16472 0.85451 0.78683 0.79221 0.77357 1.19595 1.20585 1.19182 1.19692 0.94583 0.99628 0.94144 1.20833 0.97424 0.95108 0.94839 1.21257 0.99510 1.02969 0.94034 1.17869 0.95425 0.99745 0.80836 1.91466 1.96253 1.84275 1.40508 1.21272 0.96332 1.01281 0.97893 1.21062 0.99059 0.97916 0.92330 0.87746 0.90133 0.87385 0.77211 0.79910 0.83793 1.02750 0.97311 0.92630 0.85922 0.83608 0.82115 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 10.93 127.77 1.40 2.51 16 2 N -0.46 -12.85 3.15 -537.60 -1.69 -14.54 16 3 C -0.05 -1.31 11.58 83.09 0.96 -0.35 16 4 C -0.06 -1.88 11.87 83.52 0.99 -0.89 16 5 N -0.52 -19.56 10.68 -188.13 -2.01 -21.57 16 6 C 0.17 5.97 6.43 138.13 0.89 6.85 16 7 C 0.21 7.58 2.55 43.42 0.11 7.69 16 8 H 0.09 3.19 6.26 -2.38 -0.01 3.18 16 9 N -0.66 -29.23 5.69 -503.39 -2.87 -32.10 16 10 C 0.22 11.66 5.23 85.56 0.45 12.11 16 11 C -0.54 -30.95 9.32 25.60 0.24 -30.72 16 12 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 13 C 0.01 0.40 5.46 84.66 0.46 0.86 16 14 N -0.93 -55.71 13.29 21.45 0.28 -55.42 16 15 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 C -0.08 -2.43 4.94 -19.86 -0.10 -2.52 16 20 C -0.06 -1.99 9.32 22.26 0.21 -1.78 16 21 C -0.16 -4.33 10.03 22.31 0.22 -4.11 16 22 C 0.08 2.06 7.30 22.38 0.16 2.23 16 23 F -0.15 -3.73 17.27 44.97 0.78 -2.95 16 24 C -0.15 -3.34 10.03 22.32 0.22 -3.11 16 25 C -0.09 -2.06 9.67 22.26 0.22 -1.84 16 26 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.66 6.92 -2.39 -0.02 1.65 16 28 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.21 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.18 4.65 8.06 -2.91 -0.02 4.62 16 31 H 0.34 15.73 7.37 -89.69 -0.66 15.07 16 32 H -0.05 -2.66 8.00 -2.39 -0.02 -2.68 16 33 H 0.01 0.50 8.06 -2.39 -0.02 0.48 16 34 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 35 H 0.12 4.16 7.25 -2.91 -0.02 4.14 16 36 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 37 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.15 2.78 8.04 -2.91 -0.02 2.75 16 Total: -1.00 -71.82 332.11 3.37 -68.45 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.42 Total: 24.44 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 6.43 Total: -13.07 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -6.28 Total: -123.64 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.78 Total: -2.95 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -71.82 3.37 -68.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028658076.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.618 kcal (2) G-P(sol) polarization free energy of solvation -71.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds