Wall clock time and date at job start Tue Mar 31 2020 06:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36882 * 126.40033 * 2 1 4 4 C 1.34666 * 106.81790 * 179.97438 * 3 2 1 5 5 N 1.34130 * 108.01966 * 359.78209 * 4 3 2 6 6 C 1.30492 * 109.25874 * 0.36504 * 5 4 3 7 7 C 1.50703 * 125.65384 * 179.89768 * 6 5 4 8 8 H 1.09000 * 109.46940 * 194.69431 * 7 6 5 9 9 N 1.46901 * 109.46742 * 314.69517 * 7 6 5 10 10 C 1.46905 * 110.99870 * 274.99779 * 9 7 6 11 11 C 1.50697 * 109.47066 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00144 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00103 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99826 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00043 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46802 * 60.00722 * 15 13 11 17 17 H 1.48498 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47344 * 300.00519 * 15 13 11 19 19 C 1.50693 * 109.47089 * 74.69339 * 7 6 5 20 20 C 1.38230 * 120.01344 * 265.00202 * 19 7 6 21 21 C 1.38217 * 120.02514 * 179.97438 * 20 19 7 22 22 C 1.38269 * 120.05231 * 0.02562 * 21 20 19 23 23 C 1.38171 * 120.02762 * 0.02562 * 22 21 20 24 24 C 1.38438 * 120.01436 * 84.72778 * 19 7 6 25 25 F 1.35098 * 120.02364 * 359.97438 * 24 19 7 26 26 H 1.09002 * 109.47190 * 270.02864 * 1 2 3 27 27 H 1.09001 * 109.47399 * 30.02294 * 1 2 3 28 28 H 1.08998 * 109.47456 * 150.02454 * 1 2 3 29 29 H 1.08003 * 126.58834 * 359.94274 * 3 2 1 30 30 H 1.07997 * 125.99007 * 180.02562 * 4 3 2 31 31 H 1.00901 * 111.00067 * 38.94954 * 9 7 6 32 32 H 1.09001 * 109.46798 * 300.00327 * 10 9 7 33 33 H 1.08998 * 109.46961 * 60.00043 * 10 9 7 34 34 H 0.96997 * 120.00392 * 179.97438 * 14 13 11 35 35 H 1.07996 * 119.98537 * 0.02562 * 20 19 7 36 36 H 1.07999 * 119.97055 * 180.02562 * 21 20 19 37 37 H 1.08002 * 119.98557 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.01387 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6504 0.0006 5 7 3.5094 -0.6904 0.0058 6 6 2.2663 -1.0871 0.0006 7 6 1.8016 -2.5207 0.0016 8 1 0.7453 -2.5604 -0.2641 9 7 2.5822 -3.2890 -0.9773 10 6 2.0043 -3.1687 -2.3225 11 6 2.8295 -3.9687 -3.2972 12 1 3.6963 -4.5125 -2.9519 13 6 2.4773 -4.0073 -4.6297 14 7 1.4215 -3.3455 -5.0502 15 14 3.5006 -4.9984 -5.8379 16 1 3.5069 -6.4254 -5.4272 17 1 2.9163 -4.8769 -7.1977 18 1 4.8922 -4.4804 -5.8495 19 6 1.9968 -3.1110 1.3743 20 6 3.1431 -3.8279 1.6621 21 6 3.3226 -4.3689 2.9212 22 6 2.3559 -4.1943 3.8942 23 6 1.2088 -3.4790 3.6086 24 6 1.0308 -2.9307 2.3494 25 9 -0.0871 -2.2250 2.0711 26 1 -0.3634 0.0005 1.0277 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5134 29 1 1.9613 2.1345 -0.0009 30 1 4.4368 1.2610 0.0011 31 1 3.5499 -3.0033 -0.9727 32 1 0.9827 -3.5487 -2.3143 33 1 1.9999 -2.1212 -2.6237 34 1 1.1738 -3.3723 -5.9876 35 1 3.8991 -3.9646 0.9030 36 1 4.2188 -4.9286 3.1452 37 1 2.4971 -4.6179 4.8776 38 1 0.4536 -3.3431 4.3686 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028690739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:25 Heat of formation + Delta-G solvation = 48.334200 kcal Electronic energy + Delta-G solvation = -23000.297189 eV Core-core repulsion = 19565.381081 eV Total energy + Delta-G solvation = -3434.916108 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.79280 -41.81532 -38.90810 -35.79484 -33.74873 -32.87526 -30.89736 -30.38472 -29.20226 -27.01003 -26.57751 -24.69340 -22.70095 -21.72591 -21.51634 -20.83198 -19.31297 -17.54132 -17.12301 -16.50105 -16.16432 -15.77523 -15.43927 -15.18011 -14.75823 -14.43343 -14.08155 -13.91902 -13.54682 -13.29542 -13.14460 -12.77811 -12.64022 -12.54374 -12.27303 -12.16910 -11.78780 -11.57441 -11.07307 -10.94760 -10.73474 -10.66954 -9.98637 -9.65305 -9.30081 -9.25755 -8.76479 -8.56734 -8.48188 -8.09445 -7.53759 -6.04001 -4.05520 1.29349 1.41342 2.33116 3.04624 3.35261 3.38272 3.41830 3.47046 3.77651 4.36749 4.43265 4.72224 4.73541 4.88205 4.90550 5.08458 5.16594 5.22658 5.28756 5.32822 5.43031 5.53670 5.60175 5.64208 5.72357 5.98131 6.03920 6.22729 6.27842 6.54482 6.57864 6.66356 7.03064 7.05861 7.13182 7.37089 7.42570 7.72879 8.06117 8.28730 8.40508 8.53776 9.01900 9.58898 11.07386 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.005537 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.947321 B = 5056.099319 C = 5983.803519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.452 5.452 3 C -0.068 4.068 4 C -0.028 4.028 5 N -0.482 5.482 6 C 0.197 3.803 7 C 0.210 3.790 8 H 0.093 0.907 9 N -0.663 5.663 10 C 0.196 3.804 11 C -0.512 4.512 12 H 0.064 0.936 13 C 0.057 3.943 14 N -0.899 5.899 15 Si 0.901 3.099 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.089 4.089 20 C -0.048 4.048 21 C -0.135 4.135 22 C -0.099 4.099 23 C -0.161 4.161 24 C 0.095 3.905 25 F -0.144 7.144 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.169 0.831 30 H 0.166 0.834 31 H 0.349 0.651 32 H 0.027 0.973 33 H -0.012 1.012 34 H 0.262 0.738 35 H 0.143 0.857 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.537 5.139 16.500 17.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.135 5.135 3 C -0.201 4.201 4 C -0.177 4.177 5 N -0.201 5.201 6 C -0.068 4.068 7 C 0.096 3.904 8 H 0.111 0.889 9 N -0.294 5.294 10 C 0.069 3.931 11 C -0.551 4.551 12 H 0.082 0.918 13 C -0.144 4.144 14 N -0.538 5.538 15 Si 0.728 3.272 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.091 4.091 20 C -0.066 4.066 21 C -0.153 4.153 22 C -0.117 4.117 23 C -0.180 4.180 24 C 0.076 3.924 25 F -0.123 7.123 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.187 0.813 30 H 0.184 0.816 31 H 0.169 0.831 32 H 0.045 0.955 33 H 0.006 0.994 34 H 0.071 0.929 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.486 4.092 16.419 16.986 hybrid contribution -0.344 1.350 -1.102 1.776 sum -1.830 5.441 15.317 16.357 Atomic orbital electron populations 1.22074 0.76928 1.04745 1.03474 1.45307 1.07512 1.06603 1.54032 1.22614 0.91546 0.92381 1.13551 1.22208 0.96168 0.91290 1.08003 1.70075 1.18383 1.11803 1.19799 1.24332 0.86240 0.91555 1.04680 1.18715 0.99329 0.81433 0.90899 0.88891 1.60984 1.06536 1.53414 1.08424 1.19607 0.95753 0.95299 0.82412 1.21073 1.12150 1.29765 0.92066 0.91802 1.24965 0.95338 0.95795 0.98348 1.69945 1.25734 1.42250 1.15899 0.86514 0.80299 0.80574 0.79766 1.20082 1.21382 1.20187 1.19766 0.94817 1.00253 0.94268 1.20998 0.96070 0.93228 0.96291 1.21237 0.99654 1.00978 0.93409 1.20934 0.93209 0.98099 0.99488 1.20965 1.00020 1.01706 0.95337 1.17573 0.83986 0.96396 0.94490 1.91424 1.50123 1.76484 1.94265 0.90408 0.89801 0.89299 0.81324 0.81630 0.83142 0.95470 0.99414 0.92877 0.83948 0.85469 0.85534 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 10.47 59.84 0.63 1.52 16 2 N -0.45 -7.36 3.15 -121.28 -0.38 -7.74 16 3 C -0.07 -1.01 11.58 -16.56 -0.19 -1.20 16 4 C -0.03 -0.46 11.87 -17.81 -0.21 -0.67 16 5 N -0.48 -9.40 10.68 -10.82 -0.12 -9.52 16 6 C 0.20 3.70 6.44 -155.41 -1.00 2.70 16 7 C 0.21 3.99 2.33 -70.02 -0.16 3.83 16 8 H 0.09 1.80 6.06 -51.93 -0.31 1.48 16 9 N -0.66 -14.54 5.24 -110.46 -0.58 -15.12 16 10 C 0.20 5.17 5.23 -4.97 -0.03 5.14 16 11 C -0.51 -14.60 9.32 -34.44 -0.32 -14.92 16 12 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 15 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.09 -1.49 5.05 -104.55 -0.53 -2.02 16 20 C -0.05 -0.74 9.32 -39.59 -0.37 -1.11 16 21 C -0.13 -1.69 10.04 -39.58 -0.40 -2.08 16 22 C -0.10 -1.13 10.04 -39.59 -0.40 -1.53 16 23 C -0.16 -2.03 10.03 -39.51 -0.40 -2.42 16 24 C 0.10 1.44 7.24 -39.42 -0.29 1.16 16 25 F -0.14 -2.14 15.39 2.25 0.03 -2.11 16 26 H 0.08 0.87 7.43 -51.93 -0.39 0.48 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.09 1.20 6.92 -51.93 -0.36 0.84 16 29 H 0.17 1.84 8.06 -52.48 -0.42 1.41 16 30 H 0.17 2.23 8.06 -52.49 -0.42 1.81 16 31 H 0.35 7.76 7.45 -39.29 -0.29 7.47 16 32 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16 33 H -0.01 -0.35 8.00 -51.93 -0.42 -0.76 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.14 2.29 6.89 -52.49 -0.36 1.93 16 36 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 328.39 15.07 4.95 4.95 Total: -1.00 -32.82 328.39 -8.77 -41.58 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -4.63 Total: 7.35 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -3.76 Total: -10.06 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.34 Total: -58.58 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.03 Total: -2.11 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.82 -8.77 -41.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028690739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.916 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds