Wall clock time and date at job start Tue Mar 31 2020 06:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36882 * 126.40033 * 2 1 4 4 C 1.34666 * 106.81790 * 179.97438 * 3 2 1 5 5 N 1.34130 * 108.01966 * 359.78209 * 4 3 2 6 6 C 1.30492 * 109.25874 * 0.36504 * 5 4 3 7 7 C 1.50703 * 125.65384 * 179.89768 * 6 5 4 8 8 H 1.09000 * 109.46940 * 194.69431 * 7 6 5 9 9 N 1.46901 * 109.46742 * 314.69517 * 7 6 5 10 10 C 1.46905 * 110.99870 * 274.99779 * 9 7 6 11 11 C 1.50697 * 109.47066 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00144 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00103 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99826 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00043 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46802 * 60.00722 * 15 13 11 17 17 H 1.48498 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47344 * 300.00519 * 15 13 11 19 19 C 1.50693 * 109.47089 * 74.69339 * 7 6 5 20 20 C 1.38230 * 120.01344 * 265.00202 * 19 7 6 21 21 C 1.38217 * 120.02514 * 179.97438 * 20 19 7 22 22 C 1.38269 * 120.05231 * 0.02562 * 21 20 19 23 23 C 1.38171 * 120.02762 * 0.02562 * 22 21 20 24 24 C 1.38438 * 120.01436 * 84.72778 * 19 7 6 25 25 F 1.35098 * 120.02364 * 359.97438 * 24 19 7 26 26 H 1.09002 * 109.47190 * 270.02864 * 1 2 3 27 27 H 1.09001 * 109.47399 * 30.02294 * 1 2 3 28 28 H 1.08998 * 109.47456 * 150.02454 * 1 2 3 29 29 H 1.08003 * 126.58834 * 359.94274 * 3 2 1 30 30 H 1.07997 * 125.99007 * 180.02562 * 4 3 2 31 31 H 1.00901 * 111.00067 * 38.94954 * 9 7 6 32 32 H 1.09001 * 109.46798 * 300.00327 * 10 9 7 33 33 H 1.08998 * 109.46961 * 60.00043 * 10 9 7 34 34 H 0.96997 * 120.00392 * 179.97438 * 14 13 11 35 35 H 1.07996 * 119.98537 * 0.02562 * 20 19 7 36 36 H 1.07999 * 119.97055 * 180.02562 * 21 20 19 37 37 H 1.08002 * 119.98557 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.01387 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6504 0.0006 5 7 3.5094 -0.6904 0.0058 6 6 2.2663 -1.0871 0.0006 7 6 1.8016 -2.5207 0.0016 8 1 0.7453 -2.5604 -0.2641 9 7 2.5822 -3.2890 -0.9773 10 6 2.0043 -3.1687 -2.3225 11 6 2.8295 -3.9687 -3.2972 12 1 3.6963 -4.5125 -2.9519 13 6 2.4773 -4.0073 -4.6297 14 7 1.4215 -3.3455 -5.0502 15 14 3.5006 -4.9984 -5.8379 16 1 3.5069 -6.4254 -5.4272 17 1 2.9163 -4.8769 -7.1977 18 1 4.8922 -4.4804 -5.8495 19 6 1.9968 -3.1110 1.3743 20 6 3.1431 -3.8279 1.6621 21 6 3.3226 -4.3689 2.9212 22 6 2.3559 -4.1943 3.8942 23 6 1.2088 -3.4790 3.6086 24 6 1.0308 -2.9307 2.3494 25 9 -0.0871 -2.2250 2.0711 26 1 -0.3634 0.0005 1.0277 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3634 -0.8902 -0.5134 29 1 1.9613 2.1345 -0.0009 30 1 4.4368 1.2610 0.0011 31 1 3.5499 -3.0033 -0.9727 32 1 0.9827 -3.5487 -2.3143 33 1 1.9999 -2.1212 -2.6237 34 1 1.1738 -3.3723 -5.9876 35 1 3.8991 -3.9646 0.9030 36 1 4.2188 -4.9286 3.1452 37 1 2.4971 -4.6179 4.8776 38 1 0.4536 -3.3431 4.3686 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028690739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:24 Heat of formation + Delta-G solvation = 28.022484 kcal Electronic energy + Delta-G solvation = -23001.177971 eV Core-core repulsion = 19565.381081 eV Total energy + Delta-G solvation = -3435.796890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.92328 -43.10405 -40.02996 -37.41739 -34.99142 -34.90443 -32.47902 -31.44786 -30.47567 -28.66682 -27.91949 -26.24054 -24.23266 -23.07417 -22.89596 -22.13228 -20.69535 -18.96553 -18.41923 -18.17671 -17.34349 -17.14112 -16.68272 -16.56812 -16.32239 -15.94511 -15.45206 -15.04723 -14.96161 -14.72934 -14.36108 -14.13545 -14.04185 -13.92208 -13.75134 -13.52317 -13.26674 -12.97990 -12.72295 -12.68435 -12.36719 -12.08998 -11.95230 -11.37385 -10.99635 -10.70736 -10.58980 -9.86313 -9.66103 -9.47879 -9.25577 -8.25632 -6.36736 0.21048 0.35213 1.07037 1.39703 1.43948 1.51611 1.86973 2.14986 2.38240 2.69838 3.08103 3.21754 3.33260 3.43450 3.79882 3.85235 3.87276 3.99649 4.11981 4.23965 4.29788 4.46485 4.50544 4.53056 4.57120 4.73206 4.94317 4.97680 5.15238 5.17590 5.25576 5.31470 5.48225 5.52254 5.61734 5.82829 5.93295 6.01276 6.14657 6.30400 6.52763 6.79978 7.12214 7.33450 8.86165 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.014167 B = 0.005537 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.947321 B = 5056.099319 C = 5983.803519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.457 5.457 3 C -0.052 4.052 4 C -0.057 4.057 5 N -0.513 5.513 6 C 0.168 3.832 7 C 0.215 3.785 8 H 0.077 0.923 9 N -0.657 5.657 10 C 0.219 3.781 11 C -0.536 4.536 12 H 0.066 0.934 13 C 0.004 3.996 14 N -0.933 5.933 15 Si 0.975 3.025 16 H -0.265 1.265 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.113 4.113 20 C -0.070 4.070 21 C -0.129 4.129 22 C -0.086 4.086 23 C -0.156 4.156 24 C 0.076 3.924 25 F -0.148 7.148 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.214 0.786 30 H 0.190 0.810 31 H 0.346 0.654 32 H 0.002 0.998 33 H -0.048 1.048 34 H 0.266 0.734 35 H 0.125 0.875 36 H 0.156 0.844 37 H 0.170 0.830 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 5.075 18.273 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.139 5.139 3 C -0.185 4.185 4 C -0.205 4.205 5 N -0.233 5.233 6 C -0.096 4.096 7 C 0.102 3.898 8 H 0.095 0.905 9 N -0.287 5.287 10 C 0.091 3.909 11 C -0.574 4.574 12 H 0.084 0.916 13 C -0.195 4.195 14 N -0.573 5.573 15 Si 0.798 3.202 16 H -0.189 1.189 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.115 4.115 20 C -0.089 4.089 21 C -0.147 4.147 22 C -0.104 4.104 23 C -0.174 4.174 24 C 0.057 3.943 25 F -0.127 7.127 26 H 0.113 0.887 27 H 0.132 0.868 28 H 0.089 0.911 29 H 0.230 0.770 30 H 0.207 0.793 31 H 0.165 0.835 32 H 0.020 0.980 33 H -0.030 1.030 34 H 0.074 0.926 35 H 0.143 0.857 36 H 0.173 0.827 37 H 0.187 0.813 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.050 4.026 18.220 18.690 hybrid contribution -0.513 1.438 -1.553 2.177 sum -1.563 5.464 16.668 17.610 Atomic orbital electron populations 1.22287 0.75154 1.05334 1.04765 1.45554 1.08784 1.06387 1.53132 1.23323 0.90795 0.93685 1.10726 1.22779 0.98119 0.90572 1.09010 1.69987 1.19119 1.13687 1.20469 1.24082 0.86782 0.91945 1.06821 1.18551 0.97601 0.82162 0.91460 0.90545 1.60849 1.06389 1.54782 1.06653 1.19153 0.94459 0.92610 0.84675 1.21438 1.12583 1.30299 0.93092 0.91627 1.25944 0.96484 0.96742 1.00303 1.70078 1.27286 1.43423 1.16519 0.85358 0.78592 0.79143 0.77062 1.18950 1.20612 1.19323 1.19667 0.96470 1.01956 0.93451 1.21005 0.95601 0.94592 0.97679 1.21572 1.00979 1.00021 0.92140 1.21432 0.91751 0.96404 1.00800 1.21371 1.01070 1.00468 0.94515 1.17804 0.83745 0.97402 0.95384 1.91401 1.50178 1.76703 1.94436 0.88726 0.86827 0.91100 0.76951 0.79286 0.83518 0.98004 1.02985 0.92578 0.85692 0.82651 0.81250 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.67 10.47 127.77 1.34 3.01 16 2 N -0.46 -14.97 3.15 -537.62 -1.69 -16.66 16 3 C -0.05 -1.48 11.58 83.09 0.96 -0.51 16 4 C -0.06 -1.87 11.87 83.52 0.99 -0.88 16 5 N -0.51 -20.72 10.68 -188.13 -2.01 -22.73 16 6 C 0.17 6.61 6.44 138.13 0.89 7.50 16 7 C 0.22 8.74 2.33 43.42 0.10 8.84 16 8 H 0.08 3.24 6.06 -2.39 -0.01 3.23 16 9 N -0.66 -30.84 5.24 -503.38 -2.64 -33.48 16 10 C 0.22 12.32 5.23 85.55 0.45 12.77 16 11 C -0.54 -31.72 9.32 25.60 0.24 -31.48 16 12 H 0.07 3.77 7.81 -2.91 -0.02 3.74 16 13 C 0.00 0.21 5.46 84.66 0.46 0.68 16 14 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 15 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 16 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 C -0.11 -3.94 5.05 -19.82 -0.10 -4.04 16 20 C -0.07 -2.23 9.32 22.26 0.21 -2.02 16 21 C -0.13 -2.98 10.04 22.27 0.22 -2.76 16 22 C -0.09 -1.66 10.04 22.26 0.22 -1.43 16 23 C -0.16 -3.51 10.03 22.31 0.22 -3.29 16 24 C 0.08 2.30 7.24 22.38 0.16 2.46 16 25 F -0.15 -4.45 15.39 44.97 0.69 -3.76 16 26 H 0.09 2.05 7.43 -2.39 -0.02 2.04 16 27 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 2.04 6.92 -2.39 -0.02 2.03 16 29 H 0.21 3.93 8.06 -2.91 -0.02 3.90 16 30 H 0.19 4.96 8.06 -2.91 -0.02 4.94 16 31 H 0.35 16.49 7.45 -89.69 -0.67 15.82 16 32 H 0.00 0.11 8.06 -2.39 -0.02 0.10 16 33 H -0.05 -2.96 8.00 -2.39 -0.02 -2.98 16 34 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.13 4.27 6.89 -2.91 -0.02 4.25 16 36 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 37 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -74.68 328.39 3.45 -71.23 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.42 Total: 26.38 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 6.37 Total: -11.16 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -6.05 Total: -130.04 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.69 Total: -3.76 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -74.68 3.45 -71.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028690739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.251 kcal (2) G-P(sol) polarization free energy of solvation -74.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds