Wall clock time and date at job start Tue Mar 31 2020 06:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39980 * 120.22116 * 138.95201 * 3 2 1 5 5 F 1.35091 * 120.07191 * 359.97438 * 4 3 2 6 6 C 1.38112 * 119.85186 * 179.97438 * 4 3 2 7 7 C 1.38466 * 120.31722 * 0.02562 * 6 4 3 8 8 C 1.38085 * 120.45776 * 359.97438 * 7 6 4 9 9 C 1.38824 * 120.13792 * 0.28143 * 8 7 6 10 10 N 1.39036 * 120.16000 * 179.72142 * 9 8 7 11 11 C 1.46962 * 110.99755 * 63.79712 * 10 9 8 12 12 C 1.53053 * 109.36322 * 176.81398 * 11 10 9 13 13 N 1.46962 * 109.36568 * 58.40058 * 12 11 10 14 14 C 1.46896 * 110.99954 * 176.81422 * 13 12 11 15 15 C 1.50690 * 109.47450 * 58.97640 * 14 13 12 16 16 H 1.08008 * 119.99956 * 5.00765 * 15 14 13 17 17 C 1.37877 * 120.00217 * 185.00959 * 15 14 13 18 18 N 1.31510 * 120.00136 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00145 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47263 * 60.00345 * 19 17 15 21 21 H 1.48502 * 109.47408 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47408 * 299.99937 * 19 17 15 23 23 C 1.46961 * 110.87486 * 300.68211 * 13 12 11 24 24 C 1.46954 * 111.00135 * 300.00002 * 10 9 8 25 25 H 1.07991 * 119.84293 * 180.02562 * 6 4 3 26 26 H 1.07994 * 119.77110 * 180.02562 * 7 6 4 27 27 H 1.08002 * 119.92478 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.48620 * 296.78002 * 11 10 9 29 29 H 1.08996 * 109.49497 * 56.84419 * 11 10 9 30 30 H 1.08996 * 109.48989 * 298.43438 * 12 11 10 31 31 H 1.08999 * 109.50774 * 178.37530 * 12 11 10 32 32 H 1.09002 * 109.46620 * 178.97833 * 14 13 12 33 33 H 1.08999 * 109.47019 * 298.97002 * 14 13 12 34 34 H 0.96998 * 120.00559 * 180.02562 * 18 17 15 35 35 H 1.08996 * 109.48862 * 299.34389 * 23 13 12 36 36 H 1.09001 * 109.48434 * 179.28854 * 23 13 12 37 37 H 1.09005 * 109.48298 * 303.15159 * 24 10 9 38 38 H 1.09002 * 109.49111 * 63.18846 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2721 0.9132 -0.7943 5 9 2.6023 1.7974 -1.5652 6 6 4.6532 0.9074 -0.7881 7 6 5.3449 0.0029 -0.0002 8 6 4.6633 -0.9029 0.7883 9 6 3.2752 -0.9174 0.7925 10 7 2.5885 -1.8331 1.5819 11 6 2.8497 -1.5983 3.0089 12 6 2.0160 -2.5729 3.8444 13 7 2.3578 -3.9521 3.4693 14 6 1.6323 -4.9196 4.3032 15 6 0.1489 -4.7072 4.1440 16 1 -0.2198 -3.9867 3.4289 17 6 -0.7376 -5.4327 4.9113 18 7 -0.2888 -6.3104 5.7817 19 14 -2.5764 -5.1690 4.7144 20 1 -2.9742 -5.4786 3.3175 21 1 -3.3076 -6.0643 5.6466 22 1 -2.9095 -3.7549 5.0221 23 6 2.0967 -4.1867 2.0422 24 6 2.9302 -3.2123 1.2068 25 1 5.1963 1.6117 -1.4006 26 1 6.4248 0.0064 -0.0017 27 1 5.2115 -1.6049 1.3992 28 1 3.9083 -1.7556 3.2155 29 1 2.5771 -0.5745 3.2650 30 1 0.9566 -2.3973 3.6582 31 1 2.2296 -2.4202 4.9023 32 1 1.8899 -5.9321 3.9925 33 1 1.9095 -4.7786 5.3479 34 1 -0.9124 -6.8211 6.3213 35 1 1.0381 -4.0295 1.8356 36 1 2.3693 -5.2105 1.7862 37 1 2.7163 -3.3650 0.1490 38 1 3.9899 -3.3877 1.3925 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029856107.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:58 Heat of formation + Delta-G solvation = 31.559166 kcal Electronic energy + Delta-G solvation = -22542.435207 eV Core-core repulsion = 19106.791679 eV Total energy + Delta-G solvation = -3435.643528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.30403 -40.44546 -38.10283 -36.31902 -35.22411 -32.50887 -31.48966 -30.52312 -30.14070 -27.46285 -25.13194 -24.02083 -23.11154 -22.72329 -21.43477 -19.34545 -19.19557 -17.66838 -16.94026 -16.32482 -16.07603 -15.82365 -15.35474 -14.86922 -14.80391 -14.32154 -14.29009 -13.83962 -13.53920 -13.36047 -13.17231 -13.04896 -12.71655 -12.27642 -12.13333 -12.07295 -12.03630 -11.69196 -11.15154 -10.91853 -10.89444 -10.66221 -10.46652 -10.18375 -9.89075 -9.60441 -9.21142 -9.03630 -8.54248 -8.44037 -7.26250 -6.04421 -4.13206 0.37320 0.72050 2.75295 2.76446 3.30555 3.34581 3.39313 3.42070 3.56508 3.72561 4.04639 4.41299 4.50434 4.70807 4.80062 4.87561 4.94859 5.26375 5.30345 5.39263 5.44248 5.59904 5.60631 5.65003 5.78353 5.85793 5.89828 6.02843 6.14455 6.27639 6.50979 6.68241 6.78407 6.94051 7.21198 7.22740 7.49167 7.58747 7.87341 7.97498 8.19155 8.26142 8.96747 9.54292 11.00860 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023785 B = 0.004174 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.931958 B = 6706.141519 C = 7555.021553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C 0.263 3.737 3 C -0.045 4.045 4 C 0.148 3.852 5 F -0.128 7.128 6 C -0.163 4.163 7 C -0.053 4.053 8 C -0.161 4.161 9 C 0.179 3.821 10 N -0.515 5.515 11 C 0.066 3.934 12 C 0.064 3.936 13 N -0.542 5.542 14 C 0.188 3.812 15 C -0.551 4.551 16 H 0.058 0.942 17 C 0.067 3.933 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.062 3.938 24 C 0.066 3.934 25 H 0.145 0.855 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.028 0.972 33 H 0.035 0.965 34 H 0.263 0.737 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.761 12.818 -11.648 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.075 5.075 2 C -0.053 4.053 3 C -0.050 4.050 4 C 0.126 3.874 5 F -0.106 7.106 6 C -0.182 4.182 7 C -0.072 4.072 8 C -0.181 4.181 9 C 0.081 3.919 10 N -0.238 5.238 11 C -0.060 4.060 12 C -0.065 4.065 13 N -0.266 5.266 14 C 0.062 3.938 15 C -0.590 4.590 16 H 0.076 0.924 17 C -0.136 4.136 18 N -0.530 5.530 19 Si 0.715 3.285 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.067 4.067 24 C -0.060 4.060 25 H 0.163 0.837 26 H 0.158 0.842 27 H 0.159 0.841 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.889 12.671 -11.497 21.421 hybrid contribution -0.903 0.188 -0.154 0.935 sum 11.986 12.859 -11.651 21.089 Atomic orbital electron populations 1.81200 1.11779 1.07207 1.07284 1.24924 0.91977 0.94152 0.94269 1.16021 0.85558 1.00398 1.03008 1.17508 0.90025 0.88565 0.91350 1.91548 1.80731 1.65892 1.72458 1.21062 0.91283 1.02561 1.03280 1.21095 1.00630 0.92524 0.92995 1.21850 0.94028 1.00917 1.01304 1.18659 0.90027 0.91288 0.91906 1.59547 1.56622 1.03125 1.04457 1.22377 0.99327 0.99932 0.84375 1.21941 0.98285 0.88576 0.97742 1.62742 1.57512 1.03332 1.03024 1.19729 0.90833 0.90427 0.92767 1.21713 0.92634 1.22705 1.21911 0.92420 1.24931 0.98800 0.94922 0.94923 1.69924 1.34851 1.24539 1.23693 0.86725 0.85521 0.78177 0.78047 1.20240 1.21182 1.20223 1.21955 0.98488 0.97060 0.89230 1.22360 0.98865 0.85309 0.99492 0.83737 0.84195 0.84136 0.93470 0.90868 0.93008 0.90719 0.95374 0.94643 0.92744 0.93255 0.90784 0.90849 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -7.25 18.54 41.83 0.78 -6.47 16 2 C 0.26 4.10 14.46 -22.47 -0.33 3.77 16 3 C -0.04 -0.55 5.77 -106.51 -0.61 -1.16 16 4 C 0.15 1.48 7.28 -38.98 -0.28 1.19 16 5 F -0.13 -1.42 16.81 2.25 0.04 -1.38 16 6 C -0.16 -1.12 10.00 -39.54 -0.40 -1.52 16 7 C -0.05 -0.33 10.02 -39.55 -0.40 -0.73 16 8 C -0.16 -1.37 8.62 -39.42 -0.34 -1.71 16 9 C 0.18 2.09 4.71 -83.57 -0.39 1.69 16 10 N -0.52 -7.43 4.05 -170.71 -0.69 -8.12 16 11 C 0.07 0.95 5.35 -3.76 -0.02 0.93 16 12 C 0.06 1.19 5.24 -3.76 -0.02 1.17 16 13 N -0.54 -11.00 4.92 -235.92 -1.16 -12.16 16 14 C 0.19 4.70 5.14 -4.98 -0.03 4.68 16 15 C -0.55 -15.05 7.66 -34.45 -0.26 -15.31 16 16 H 0.06 1.60 5.82 -52.48 -0.31 1.30 16 17 C 0.07 1.88 5.46 -17.82 -0.10 1.79 16 18 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 19 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.06 1.14 5.32 -3.77 -0.02 1.12 16 24 C 0.07 0.94 5.31 -3.77 -0.02 0.92 16 25 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 26 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 27 H 0.14 1.09 7.04 -52.49 -0.37 0.72 16 28 H 0.05 0.61 7.43 -51.93 -0.39 0.23 16 29 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 30 H 0.05 1.13 6.61 -51.93 -0.34 0.79 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.03 0.75 8.12 -51.93 -0.42 0.33 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.05 1.06 6.78 -51.93 -0.35 0.71 16 36 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 37 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 38 H 0.05 0.61 7.23 -51.93 -0.38 0.23 16 LS Contribution 322.90 15.07 4.87 4.87 Total: -1.00 -30.92 322.90 -8.32 -39.23 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -4.65 Total: -4.33 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -3.21 Total: -3.16 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.34 Total: -52.11 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.92 -8.32 -39.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029856107.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.791 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds