Wall clock time and date at job start Tue Mar 31 2020 06:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39980 * 120.22116 * 138.95201 * 3 2 1 5 5 F 1.35091 * 120.07191 * 359.97438 * 4 3 2 6 6 C 1.38112 * 119.85186 * 179.97438 * 4 3 2 7 7 C 1.38466 * 120.31722 * 0.02562 * 6 4 3 8 8 C 1.38085 * 120.45776 * 359.97438 * 7 6 4 9 9 C 1.38824 * 120.13792 * 0.28143 * 8 7 6 10 10 N 1.39036 * 120.16000 * 179.72142 * 9 8 7 11 11 C 1.46962 * 110.99755 * 63.79712 * 10 9 8 12 12 C 1.53053 * 109.36322 * 176.81398 * 11 10 9 13 13 N 1.46962 * 109.36568 * 58.40058 * 12 11 10 14 14 C 1.46896 * 110.99954 * 176.81422 * 13 12 11 15 15 C 1.50690 * 109.47450 * 58.97640 * 14 13 12 16 16 H 1.08008 * 119.99956 * 5.00765 * 15 14 13 17 17 C 1.37877 * 120.00217 * 185.00959 * 15 14 13 18 18 N 1.31510 * 120.00136 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00145 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47263 * 60.00345 * 19 17 15 21 21 H 1.48502 * 109.47408 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47408 * 299.99937 * 19 17 15 23 23 C 1.46961 * 110.87486 * 300.68211 * 13 12 11 24 24 C 1.46954 * 111.00135 * 300.00002 * 10 9 8 25 25 H 1.07991 * 119.84293 * 180.02562 * 6 4 3 26 26 H 1.07994 * 119.77110 * 180.02562 * 7 6 4 27 27 H 1.08002 * 119.92478 * 179.97438 * 8 7 6 28 28 H 1.09004 * 109.48620 * 296.78002 * 11 10 9 29 29 H 1.08996 * 109.49497 * 56.84419 * 11 10 9 30 30 H 1.08996 * 109.48989 * 298.43438 * 12 11 10 31 31 H 1.08999 * 109.50774 * 178.37530 * 12 11 10 32 32 H 1.09002 * 109.46620 * 178.97833 * 14 13 12 33 33 H 1.08999 * 109.47019 * 298.97002 * 14 13 12 34 34 H 0.96998 * 120.00559 * 180.02562 * 18 17 15 35 35 H 1.08996 * 109.48862 * 299.34389 * 23 13 12 36 36 H 1.09001 * 109.48434 * 179.28854 * 23 13 12 37 37 H 1.09005 * 109.48298 * 303.15159 * 24 10 9 38 38 H 1.09002 * 109.49111 * 63.18846 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2721 0.9132 -0.7943 5 9 2.6023 1.7974 -1.5652 6 6 4.6532 0.9074 -0.7881 7 6 5.3449 0.0029 -0.0002 8 6 4.6633 -0.9029 0.7883 9 6 3.2752 -0.9174 0.7925 10 7 2.5885 -1.8331 1.5819 11 6 2.8497 -1.5983 3.0089 12 6 2.0160 -2.5729 3.8444 13 7 2.3578 -3.9521 3.4693 14 6 1.6323 -4.9196 4.3032 15 6 0.1489 -4.7072 4.1440 16 1 -0.2198 -3.9867 3.4289 17 6 -0.7376 -5.4327 4.9113 18 7 -0.2888 -6.3104 5.7817 19 14 -2.5764 -5.1690 4.7144 20 1 -2.9742 -5.4786 3.3175 21 1 -3.3076 -6.0643 5.6466 22 1 -2.9095 -3.7549 5.0221 23 6 2.0967 -4.1867 2.0422 24 6 2.9302 -3.2123 1.2068 25 1 5.1963 1.6117 -1.4006 26 1 6.4248 0.0064 -0.0017 27 1 5.2115 -1.6049 1.3992 28 1 3.9083 -1.7556 3.2155 29 1 2.5771 -0.5745 3.2650 30 1 0.9566 -2.3973 3.6582 31 1 2.2296 -2.4202 4.9023 32 1 1.8899 -5.9321 3.9925 33 1 1.9095 -4.7786 5.3479 34 1 -0.9124 -6.8211 6.3213 35 1 1.0381 -4.0295 1.8356 36 1 2.3693 -5.2105 1.7862 37 1 2.7163 -3.3650 0.1490 38 1 3.9899 -3.3877 1.3925 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029856107.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:57 Heat of formation + Delta-G solvation = 11.055294 kcal Electronic energy + Delta-G solvation = -22543.324322 eV Core-core repulsion = 19106.791679 eV Total energy + Delta-G solvation = -3436.532643 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.08399 -41.40345 -39.31446 -37.51539 -36.60761 -34.51793 -32.32654 -31.86878 -31.17542 -29.04359 -26.81018 -24.78832 -24.47642 -24.10082 -22.79120 -20.71772 -20.12334 -18.75036 -18.25106 -17.68123 -17.06122 -16.88624 -16.52133 -16.07736 -16.01128 -15.82606 -15.64790 -14.98578 -14.90379 -14.74022 -14.37644 -14.31091 -13.93062 -13.65955 -13.55050 -13.19596 -12.93514 -12.92101 -12.83351 -12.63177 -12.45273 -12.25650 -12.16329 -11.86321 -11.81384 -11.42944 -10.64707 -9.98597 -9.74411 -9.58092 -9.08635 -8.20706 -6.38450 -0.39463 0.05142 1.30667 1.30953 1.39737 1.61942 1.89334 2.31879 2.49330 2.64434 2.79156 3.04415 3.25697 3.32435 3.85787 3.94235 4.04961 4.18465 4.25149 4.30789 4.32947 4.44831 4.51382 4.67065 4.75074 4.81026 4.96980 5.06162 5.07878 5.16971 5.23130 5.27365 5.30876 5.33150 5.65817 5.71416 5.82910 5.99729 6.15153 6.29222 6.45915 6.46320 6.81954 7.32442 8.81528 Molecular weight = 289.13amu Principal moments of inertia in cm(-1) A = 0.023785 B = 0.004174 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.931958 B = 6706.141519 C = 7555.021553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.280 3.720 3 C -0.073 4.073 4 C 0.140 3.860 5 F -0.139 7.139 6 C -0.142 4.142 7 C -0.027 4.027 8 C -0.152 4.152 9 C 0.163 3.837 10 N -0.539 5.539 11 C 0.080 3.920 12 C 0.064 3.936 13 N -0.530 5.530 14 C 0.200 3.800 15 C -0.556 4.556 16 H 0.046 0.954 17 C 0.019 3.981 18 N -0.921 5.921 19 Si 0.946 3.054 20 H -0.276 1.276 21 H -0.274 1.274 22 H -0.277 1.277 23 C 0.062 3.938 24 C 0.079 3.921 25 H 0.179 0.821 26 H 0.186 0.814 27 H 0.157 0.843 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.011 0.989 31 H 0.071 0.929 32 H 0.009 0.991 33 H 0.012 0.988 34 H 0.266 0.734 35 H 0.009 0.991 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.116 14.298 -12.999 26.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.034 4.034 3 C -0.078 4.078 4 C 0.118 3.882 5 F -0.118 7.118 6 C -0.161 4.161 7 C -0.045 4.045 8 C -0.172 4.172 9 C 0.066 3.934 10 N -0.262 5.262 11 C -0.046 4.046 12 C -0.065 4.065 13 N -0.254 5.254 14 C 0.074 3.926 15 C -0.595 4.595 16 H 0.064 0.936 17 C -0.181 4.181 18 N -0.560 5.560 19 Si 0.772 3.228 20 H -0.201 1.201 21 H -0.199 1.199 22 H -0.202 1.202 23 C -0.067 4.067 24 C -0.046 4.046 25 H 0.196 0.804 26 H 0.203 0.797 27 H 0.175 0.825 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.029 0.971 31 H 0.090 0.910 32 H 0.027 0.973 33 H 0.031 0.969 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.253 14.166 -12.864 25.106 hybrid contribution -1.812 -0.226 0.221 1.840 sum 14.441 13.940 -12.643 23.722 Atomic orbital electron populations 1.81188 1.13747 1.09590 1.09777 1.25681 0.92943 0.92336 0.92449 1.16228 0.83622 1.02567 1.05380 1.17755 0.91162 0.88131 0.91166 1.91525 1.81291 1.66222 1.72749 1.21501 0.89578 1.02472 1.02527 1.21588 1.02619 0.90065 0.90275 1.22011 0.92192 1.01504 1.01484 1.18573 0.91280 0.91151 0.92361 1.59285 1.58627 1.03673 1.04610 1.22190 0.99599 0.98685 0.84104 1.21948 0.96972 0.88724 0.98834 1.62685 1.55945 1.03234 1.03541 1.19399 0.90148 0.90772 0.92330 1.21906 0.94096 1.22118 1.21370 0.93631 1.25651 1.02850 0.94785 0.94766 1.70014 1.36249 1.25329 1.24444 0.85799 0.80830 0.78103 0.78083 1.20142 1.19926 1.20205 1.21991 0.97224 0.98885 0.88639 1.22197 0.99138 0.84375 0.98933 0.80367 0.79707 0.82546 0.90783 0.89866 0.97059 0.91049 0.97319 0.96935 0.92460 0.97214 0.90702 0.89607 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.87 18.54 19.00 0.35 -17.52 16 2 C 0.28 8.99 14.46 88.33 1.28 10.27 16 3 C -0.07 -1.68 5.77 -21.09 -0.12 -1.80 16 4 C 0.14 2.42 7.28 22.66 0.16 2.58 16 5 F -0.14 -2.88 16.81 44.97 0.76 -2.12 16 6 C -0.14 -1.19 10.00 22.29 0.22 -0.96 16 7 C -0.03 -0.15 10.02 22.29 0.22 0.07 16 8 C -0.15 -1.79 8.62 22.37 0.19 -1.60 16 9 C 0.16 3.38 4.71 38.66 0.18 3.56 16 10 N -0.54 -14.88 4.05 -694.02 -2.81 -17.69 16 11 C 0.08 2.21 5.35 86.31 0.46 2.67 16 12 C 0.06 2.47 5.24 86.31 0.45 2.92 16 13 N -0.53 -22.02 4.92 -900.32 -4.43 -26.45 16 14 C 0.20 10.47 5.14 85.55 0.44 10.91 16 15 C -0.56 -31.71 7.66 25.60 0.20 -31.52 16 16 H 0.05 2.68 5.82 -2.91 -0.02 2.66 16 17 C 0.02 1.12 5.46 84.66 0.46 1.59 16 18 N -0.92 -55.17 13.29 21.45 0.28 -54.88 16 19 Si 0.95 46.07 29.54 68.60 2.03 48.10 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 C 0.06 2.32 5.32 86.30 0.46 2.78 16 24 C 0.08 2.14 5.31 86.31 0.46 2.60 16 25 H 0.18 0.38 8.06 -2.92 -0.02 0.35 16 26 H 0.19 -0.40 8.06 -2.91 -0.02 -0.42 16 27 H 0.16 1.44 7.04 -2.91 -0.02 1.42 16 28 H 0.07 1.66 7.43 -2.39 -0.02 1.65 16 29 H 0.08 2.14 8.13 -2.39 -0.02 2.12 16 30 H 0.01 0.51 6.61 -2.39 -0.02 0.50 16 31 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.01 0.48 8.12 -2.39 -0.02 0.46 16 33 H 0.01 0.70 8.14 -2.39 -0.02 0.69 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.01 0.43 6.78 -2.39 -0.02 0.42 16 36 H 0.07 2.75 8.12 -2.39 -0.02 2.73 16 37 H 0.09 2.12 8.13 -2.38 -0.02 2.10 16 38 H 0.07 1.63 7.23 -2.39 -0.02 1.61 16 Total: -1.00 -72.90 322.90 2.33 -70.56 By element: Atomic # 1 Polarization: -5.15 SS G_CDS: 1.08 Total: -4.06 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.07 Total: 4.06 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -6.60 Total: -116.53 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.76 Total: -2.12 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -72.90 2.33 -70.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029856107.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.617 kcal (2) G-P(sol) polarization free energy of solvation -72.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds