Wall clock time and date at job start Tue Mar 31 2020 06:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00198 * 2 1 4 4 H 1.48496 * 109.47156 * 269.99971 * 3 2 1 5 5 H 1.48499 * 109.46988 * 30.00232 * 3 2 1 6 6 H 1.48500 * 109.47025 * 150.00064 * 3 2 1 7 7 C 1.37882 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00043 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00045 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47121 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47330 * 185.12397 * 11 10 9 13 13 C 1.46419 * 111.00185 * 292.56128 * 12 11 10 14 14 C 1.53390 * 108.63675 * 178.90650 * 13 12 11 15 15 C 1.53045 * 107.89611 * 291.78658 * 14 13 12 16 16 C 1.50774 * 109.67495 * 47.19990 * 15 14 13 17 17 C 1.40013 * 118.14548 * 164.63711 * 16 15 14 18 18 C 1.47752 * 119.91239 * 359.72610 * 17 16 15 19 19 O 1.21469 * 120.00061 * 0.02562 * 18 17 16 20 20 O 1.34710 * 119.99529 * 180.02562 * 18 17 16 21 21 C 1.39424 * 120.17267 * 179.74345 * 17 16 15 22 22 C 1.38019 * 119.71648 * 359.97438 * 21 17 16 23 23 C 1.37914 * 120.12959 * 0.12626 * 22 21 17 24 24 C 1.38110 * 122.09360 * 344.57815 * 16 15 14 25 25 H 0.97004 * 119.99653 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46818 * 60.00252 * 9 7 2 27 27 H 1.08997 * 109.47304 * 300.00527 * 9 7 2 28 28 H 1.09000 * 109.47115 * 59.99778 * 10 9 7 29 29 H 1.09002 * 109.46550 * 299.99842 * 10 9 7 30 30 H 1.09008 * 109.47187 * 65.12826 * 11 10 9 31 31 H 1.08998 * 109.47309 * 305.12628 * 11 10 9 32 32 H 1.08996 * 109.61276 * 59.15921 * 13 12 11 33 33 H 1.09000 * 109.74853 * 298.73245 * 13 12 11 34 34 H 1.08995 * 109.77683 * 172.18514 * 14 13 12 35 35 H 1.09008 * 109.82050 * 51.40660 * 14 13 12 36 36 H 1.09009 * 109.43657 * 167.26108 * 15 14 13 37 37 H 1.08999 * 109.43822 * 287.13265 * 15 14 13 38 38 H 0.96700 * 116.99323 * 179.97438 * 20 18 17 39 39 H 1.07998 * 120.13927 * 180.02562 * 21 17 16 40 40 H 1.08000 * 119.93072 * 180.15006 * 22 21 17 41 41 H 1.08007 * 119.62998 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 7 6.0412 -4.0161 -0.1234 13 6 5.7216 -4.7956 1.0741 14 6 6.2311 -6.2289 0.8764 15 6 5.3838 -6.8825 -0.2177 16 6 5.2646 -5.9472 -1.3942 17 6 4.8159 -6.4719 -2.6123 18 6 4.4809 -7.9071 -2.7176 19 8 4.5944 -8.6300 -1.7481 20 8 4.0495 -8.4138 -3.8889 21 6 4.6848 -5.6437 -3.7263 22 6 4.9987 -4.3037 -3.6233 23 6 5.4427 -3.7868 -2.4242 24 6 5.5812 -4.6061 -1.3005 25 1 -0.4850 0.8401 -0.0004 26 1 3.8752 -0.6797 0.8895 27 1 3.8746 -0.6808 -0.8904 28 1 3.6578 -3.1506 -0.8896 29 1 3.6585 -3.1501 0.8904 30 1 5.9148 -2.2043 0.9325 31 1 5.9149 -2.0454 -0.8404 32 1 4.6422 -4.8087 1.2249 33 1 6.2070 -4.3514 1.9431 34 1 6.1283 -6.7883 1.8061 35 1 7.2774 -6.2104 0.5709 36 1 5.8583 -7.8101 -0.5384 37 1 4.3905 -7.1007 0.1744 38 1 3.8430 -9.3583 -3.9090 39 1 4.3382 -6.0490 -4.6654 40 1 4.8961 -3.6585 -4.4833 41 1 5.6857 -2.7369 -2.3526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037595873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:46 Heat of formation + Delta-G solvation = -65.214740 kcal Electronic energy + Delta-G solvation = -23229.096920 eV Core-core repulsion = 19880.424515 eV Total energy + Delta-G solvation = -3348.672405 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.07432 -39.82547 -36.94720 -36.33636 -34.90377 -33.25270 -31.44920 -30.38154 -30.14069 -27.17254 -24.98458 -24.53010 -23.28301 -22.46660 -20.82087 -20.33590 -19.41379 -17.99249 -17.28518 -16.69881 -16.19438 -16.00671 -15.75811 -15.41865 -14.74187 -14.20454 -14.08988 -13.81288 -13.63399 -13.31570 -13.21467 -12.87674 -12.60497 -12.39041 -12.15450 -11.82741 -11.71151 -11.56336 -11.32109 -11.24476 -11.02849 -10.86239 -10.56337 -10.29045 -10.04257 -9.85647 -9.73565 -9.45091 -9.23886 -8.81976 -8.56869 -7.52225 -6.06882 -4.05365 0.72251 1.43516 2.53270 2.91593 3.27569 3.35411 3.37910 3.65537 4.02558 4.41935 4.65052 4.76312 4.92077 5.00495 5.03638 5.22514 5.26642 5.31344 5.37467 5.49108 5.58765 5.61820 5.73811 5.79340 5.84978 5.95840 5.97802 6.03766 6.10456 6.25675 6.33589 6.36501 6.44807 6.45966 6.54174 6.72059 6.79444 7.14559 7.21210 7.31110 7.39248 7.75255 7.80991 8.51059 8.97917 9.55112 11.06679 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.004387 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.209025 B = 6381.127349 C = 6930.011822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.069 0.931 9 C -0.008 4.008 10 C -0.137 4.137 11 C 0.047 3.953 12 N -0.492 5.492 13 C 0.050 3.950 14 C -0.125 4.125 15 C -0.082 4.082 16 C -0.063 4.063 17 C -0.113 4.113 18 C 0.527 3.473 19 O -0.512 6.512 20 O -0.513 6.513 21 C -0.092 4.092 22 C -0.111 4.111 23 C -0.113 4.113 24 C 0.128 3.872 25 H 0.263 0.737 26 H 0.016 0.984 27 H 0.011 0.989 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.411 0.589 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.537 -13.476 -5.125 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.046 4.046 10 C -0.175 4.175 11 C -0.078 4.078 12 N -0.204 5.204 13 C -0.076 4.076 14 C -0.163 4.163 15 C -0.119 4.119 16 C -0.066 4.066 17 C -0.115 4.115 18 C 0.373 3.627 19 O -0.402 6.402 20 O -0.325 6.325 21 C -0.112 4.112 22 C -0.129 4.129 23 C -0.133 4.133 24 C 0.029 3.971 25 H 0.073 0.927 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.269 0.731 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.032 -13.073 -4.769 19.762 hybrid contribution -0.650 0.372 -0.045 0.750 sum 13.382 -12.701 -4.814 19.067 Atomic orbital electron populations 1.69920 1.06338 1.26884 1.51079 1.25041 0.94721 0.99164 0.94549 0.86775 0.80346 0.83625 0.78510 1.20268 1.21389 1.19005 1.21112 0.89456 0.94396 1.50863 0.91244 1.19479 0.97289 0.91625 0.96208 1.22110 0.92745 1.00904 1.01765 1.22609 0.95932 0.86167 1.03088 1.58464 1.56307 1.04405 1.01240 1.22220 1.00394 0.93513 0.91469 1.21812 1.00324 0.94864 0.99255 1.20843 1.01257 0.97557 0.92200 1.19512 0.99242 0.93337 0.94523 1.18697 1.08066 0.89549 0.95206 1.20992 0.73033 0.88866 0.79786 1.90839 1.50040 1.61483 1.37864 1.84578 1.78495 1.32443 1.36949 1.21222 0.98696 0.93524 0.97713 1.20919 0.99272 0.94976 0.97763 1.21527 0.99489 1.00272 0.92060 1.18415 0.95229 0.91707 0.91784 0.92730 0.96599 0.97025 0.92077 0.92559 0.90060 0.90047 0.92595 0.89765 0.90560 0.90936 0.88335 0.90269 0.73072 0.84833 0.85071 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.19 4.04 -27.88 -0.11 -0.30 16 10 C -0.14 -2.62 4.49 -26.73 -0.12 -2.74 16 11 C 0.05 0.72 4.84 -3.83 -0.02 0.70 16 12 N -0.49 -7.08 4.72 -171.31 -0.81 -7.89 16 13 C 0.05 0.66 5.25 -3.88 -0.02 0.64 16 14 C -0.12 -1.46 6.19 -26.51 -0.16 -1.62 16 15 C -0.08 -1.10 4.31 -27.82 -0.12 -1.22 16 16 C -0.06 -0.92 5.78 -103.97 -0.60 -1.52 16 17 C -0.11 -1.57 5.88 -104.90 -0.62 -2.19 16 18 C 0.53 6.75 8.22 34.62 0.28 7.03 16 19 O -0.51 -7.36 13.87 -19.24 -0.27 -7.63 16 20 O -0.51 -4.88 12.66 -40.52 -0.51 -5.40 16 21 C -0.09 -1.16 9.61 -39.22 -0.38 -1.54 16 22 C -0.11 -1.41 10.02 -39.78 -0.40 -1.81 16 23 C -0.11 -1.60 7.81 -39.14 -0.31 -1.91 16 24 C 0.13 1.91 4.79 -83.86 -0.40 1.51 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 27 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 28 H 0.06 1.24 6.18 -51.93 -0.32 0.92 16 29 H 0.06 1.11 6.82 -51.93 -0.35 0.76 16 30 H 0.08 1.17 8.11 -51.92 -0.42 0.74 16 31 H 0.08 1.18 6.11 -51.93 -0.32 0.86 16 32 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.10 1.34 6.06 -51.92 -0.31 1.03 16 37 H 0.08 1.12 8.03 -51.93 -0.42 0.71 16 38 H 0.41 1.96 9.11 45.56 0.42 2.37 16 39 H 0.13 1.42 7.59 -52.49 -0.40 1.02 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.14 1.83 5.89 -52.48 -0.31 1.52 16 LS Contribution 323.78 15.07 4.88 4.88 Total: -1.00 -32.89 323.78 -8.83 -41.72 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.82 Total: 2.90 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -3.40 Total: -18.24 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.04 Total: -35.01 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.78 Total: -13.03 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.89 -8.83 -41.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037595873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.496 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds