Wall clock time and date at job start Tue Mar 31 2020 06:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00198 * 2 1 4 4 H 1.48496 * 109.47156 * 269.99971 * 3 2 1 5 5 H 1.48499 * 109.46988 * 30.00232 * 3 2 1 6 6 H 1.48500 * 109.47025 * 150.00064 * 3 2 1 7 7 C 1.37882 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00043 * 0.02562 * 7 2 1 9 9 C 1.50705 * 120.00045 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47121 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47330 * 185.12397 * 11 10 9 13 13 C 1.46419 * 111.00185 * 292.56128 * 12 11 10 14 14 C 1.53390 * 108.63675 * 178.90650 * 13 12 11 15 15 C 1.53045 * 107.89611 * 291.78658 * 14 13 12 16 16 C 1.50774 * 109.67495 * 47.19990 * 15 14 13 17 17 C 1.40013 * 118.14548 * 164.63711 * 16 15 14 18 18 C 1.47752 * 119.91239 * 359.72610 * 17 16 15 19 19 O 1.21469 * 120.00061 * 0.02562 * 18 17 16 20 20 O 1.34710 * 119.99529 * 180.02562 * 18 17 16 21 21 C 1.39424 * 120.17267 * 179.74345 * 17 16 15 22 22 C 1.38019 * 119.71648 * 359.97438 * 21 17 16 23 23 C 1.37914 * 120.12959 * 0.12626 * 22 21 17 24 24 C 1.38110 * 122.09360 * 344.57815 * 16 15 14 25 25 H 0.97004 * 119.99653 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46818 * 60.00252 * 9 7 2 27 27 H 1.08997 * 109.47304 * 300.00527 * 9 7 2 28 28 H 1.09000 * 109.47115 * 59.99778 * 10 9 7 29 29 H 1.09002 * 109.46550 * 299.99842 * 10 9 7 30 30 H 1.09008 * 109.47187 * 65.12826 * 11 10 9 31 31 H 1.08998 * 109.47309 * 305.12628 * 11 10 9 32 32 H 1.08996 * 109.61276 * 59.15921 * 13 12 11 33 33 H 1.09000 * 109.74853 * 298.73245 * 13 12 11 34 34 H 1.08995 * 109.77683 * 172.18514 * 14 13 12 35 35 H 1.09008 * 109.82050 * 51.40660 * 14 13 12 36 36 H 1.09009 * 109.43657 * 167.26108 * 15 14 13 37 37 H 1.08999 * 109.43822 * 287.13265 * 15 14 13 38 38 H 0.96700 * 116.99323 * 179.97438 * 20 18 17 39 39 H 1.07998 * 120.13927 * 180.02562 * 21 17 16 40 40 H 1.08000 * 119.93072 * 180.15006 * 22 21 17 41 41 H 1.08007 * 119.62998 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 7 6.0412 -4.0161 -0.1234 13 6 5.7216 -4.7956 1.0741 14 6 6.2311 -6.2289 0.8764 15 6 5.3838 -6.8825 -0.2177 16 6 5.2646 -5.9472 -1.3942 17 6 4.8159 -6.4719 -2.6123 18 6 4.4809 -7.9071 -2.7176 19 8 4.5944 -8.6300 -1.7481 20 8 4.0495 -8.4138 -3.8889 21 6 4.6848 -5.6437 -3.7263 22 6 4.9987 -4.3037 -3.6233 23 6 5.4427 -3.7868 -2.4242 24 6 5.5812 -4.6061 -1.3005 25 1 -0.4850 0.8401 -0.0004 26 1 3.8752 -0.6797 0.8895 27 1 3.8746 -0.6808 -0.8904 28 1 3.6578 -3.1506 -0.8896 29 1 3.6585 -3.1501 0.8904 30 1 5.9148 -2.2043 0.9325 31 1 5.9149 -2.0454 -0.8404 32 1 4.6422 -4.8087 1.2249 33 1 6.2070 -4.3514 1.9431 34 1 6.1283 -6.7883 1.8061 35 1 7.2774 -6.2104 0.5709 36 1 5.8583 -7.8101 -0.5384 37 1 4.3905 -7.1007 0.1744 38 1 3.8430 -9.3583 -3.9090 39 1 4.3382 -6.0490 -4.6654 40 1 4.8961 -3.6585 -4.4833 41 1 5.6857 -2.7369 -2.3526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037595873.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:45 Heat of formation + Delta-G solvation = -86.515721 kcal Electronic energy + Delta-G solvation = -23230.020600 eV Core-core repulsion = 19880.424515 eV Total energy + Delta-G solvation = -3349.596085 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.11093 -40.82920 -38.02654 -37.26236 -36.22301 -35.00587 -33.19885 -31.39842 -31.28302 -28.78667 -26.15385 -25.73871 -24.43969 -23.71427 -22.32739 -21.58297 -20.46278 -19.05661 -18.85428 -18.17859 -17.26222 -17.07437 -16.80235 -16.44556 -16.36906 -15.60702 -15.54576 -14.95739 -14.89880 -14.52091 -14.44682 -14.21051 -13.95716 -13.58200 -13.40129 -13.22898 -13.00807 -12.67787 -12.57624 -12.49862 -12.38676 -12.08479 -11.91531 -11.76491 -11.65745 -11.41352 -11.35799 -10.94128 -10.78245 -10.68325 -9.87330 -8.64798 -8.29257 -6.34428 -0.31655 0.38493 1.37421 1.39820 1.51681 1.52276 2.03614 2.36968 2.60517 2.95503 3.06448 3.63944 3.76957 3.86303 3.97383 4.07597 4.17444 4.25026 4.25511 4.36031 4.38337 4.50034 4.62468 4.69234 4.77280 4.82614 4.88751 4.92003 5.02158 5.03347 5.08607 5.13843 5.26448 5.37798 5.43406 5.47988 5.54276 5.60408 5.65419 5.70451 6.03467 6.25827 6.28619 6.73669 6.97772 7.30374 8.88021 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.004387 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.209025 B = 6381.127349 C = 6930.011822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.240 1.240 7 C -0.533 4.533 8 H 0.020 0.980 9 C -0.004 4.004 10 C -0.124 4.124 11 C 0.057 3.943 12 N -0.487 5.487 13 C 0.047 3.953 14 C -0.116 4.116 15 C -0.078 4.078 16 C -0.081 4.081 17 C -0.131 4.131 18 C 0.531 3.469 19 O -0.534 6.534 20 O -0.503 6.503 21 C -0.089 4.089 22 C -0.114 4.114 23 C -0.126 4.126 24 C 0.109 3.891 25 H 0.266 0.734 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.034 0.966 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.432 0.568 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.838 -12.640 -5.776 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.195 4.195 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.163 1.163 7 C -0.571 4.571 8 H 0.038 0.962 9 C -0.042 4.042 10 C -0.163 4.163 11 C -0.068 4.068 12 N -0.200 5.200 13 C -0.079 4.079 14 C -0.154 4.154 15 C -0.115 4.115 16 C -0.084 4.084 17 C -0.133 4.133 18 C 0.377 3.623 19 O -0.426 6.426 20 O -0.317 6.317 21 C -0.108 4.108 22 C -0.132 4.132 23 C -0.147 4.147 24 C 0.010 3.990 25 H 0.075 0.925 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.052 0.948 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.294 0.706 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 16.346 -12.283 -5.443 21.158 hybrid contribution -1.496 -0.034 0.072 1.498 sum 14.850 -12.316 -5.371 20.027 Atomic orbital electron populations 1.70095 1.08591 1.28205 1.52731 1.26104 0.95618 1.03821 0.93947 0.85583 0.79613 0.77608 0.79386 1.18889 1.21319 1.16281 1.21480 0.92468 0.92655 1.50541 0.96171 1.19423 0.93514 0.94302 0.96989 1.21918 0.95956 0.98087 1.00302 1.22490 0.92491 0.87298 1.04555 1.58565 1.55938 1.03992 1.01456 1.22318 0.99330 0.94486 0.91800 1.21786 1.00010 0.94038 0.99549 1.20776 1.00688 0.97480 0.92516 1.19752 0.99706 0.93671 0.95318 1.18979 1.08215 0.90565 0.95513 1.20854 0.72738 0.88495 0.80196 1.90829 1.51123 1.61892 1.38774 1.84518 1.77693 1.34420 1.35110 1.21515 0.97705 0.93465 0.98143 1.21266 0.98357 0.95428 0.98164 1.21747 0.99800 1.00635 0.92474 1.18608 0.96085 0.92060 0.92268 0.92547 0.95651 0.95608 0.93762 0.94046 0.88442 0.88698 0.94761 0.87834 0.88589 0.90399 0.88656 0.91826 0.70552 0.82724 0.82604 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.56 13.96 21.45 0.30 -60.26 16 2 C 0.00 0.08 5.47 84.66 0.46 0.54 16 3 Si 0.96 43.38 27.47 68.60 1.88 45.27 16 4 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 7 C -0.53 -30.95 9.66 25.60 0.25 -30.70 16 8 H 0.02 1.31 7.99 -2.91 -0.02 1.29 16 9 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 10 C -0.12 -4.72 4.49 30.59 0.14 -4.58 16 11 C 0.06 1.63 4.84 86.30 0.42 2.05 16 12 N -0.49 -13.39 4.72 -695.89 -3.29 -16.68 16 13 C 0.05 1.18 5.25 86.53 0.45 1.63 16 14 C -0.12 -2.60 6.19 30.74 0.19 -2.41 16 15 C -0.08 -2.10 4.31 29.89 0.13 -1.97 16 16 C -0.08 -2.37 5.78 -19.44 -0.11 -2.48 16 17 C -0.13 -3.57 5.88 -20.05 -0.12 -3.69 16 18 C 0.53 13.26 8.22 70.34 0.58 13.84 16 19 O -0.53 -15.33 13.87 19.94 0.28 -15.06 16 20 O -0.50 -8.76 12.66 -56.20 -0.71 -9.47 16 21 C -0.09 -2.13 9.61 22.50 0.22 -1.91 16 22 C -0.11 -2.73 10.02 22.14 0.22 -2.50 16 23 C -0.13 -3.44 7.81 22.56 0.18 -3.26 16 24 C 0.11 3.18 4.79 38.26 0.18 3.36 16 25 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 26 H 0.03 1.10 7.20 -2.39 -0.02 1.08 16 27 H 0.03 1.09 7.57 -2.39 -0.02 1.07 16 28 H 0.04 1.82 6.18 -2.39 -0.01 1.80 16 29 H 0.04 1.67 6.82 -2.39 -0.02 1.65 16 30 H 0.10 2.50 8.11 -2.38 -0.02 2.48 16 31 H 0.09 2.48 6.11 -2.39 -0.01 2.46 16 32 H 0.03 1.01 6.56 -2.39 -0.02 1.00 16 33 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.10 2.61 6.06 -2.38 -0.01 2.60 16 37 H 0.06 1.88 8.03 -2.39 -0.02 1.86 16 38 H 0.43 3.30 9.11 -74.06 -0.67 2.63 16 39 H 0.16 2.94 7.59 -2.91 -0.02 2.92 16 40 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 41 H 0.14 3.57 5.89 -2.91 -0.02 3.56 16 Total: -1.00 -72.88 323.78 2.09 -70.79 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.33 Total: 17.58 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 3.30 Total: -32.17 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -2.99 Total: -76.94 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.43 Total: -24.53 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.27 kcal Total: -72.88 2.09 -70.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037595873.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.727 kcal (2) G-P(sol) polarization free energy of solvation -72.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds