Wall clock time and date at job start Tue Mar 31 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00249 * 2 1 4 4 H 1.48504 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47158 * 299.99758 * 3 2 1 6 6 H 1.48495 * 109.47089 * 59.99823 * 3 2 1 7 7 C 1.37879 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99887 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46842 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47185 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47338 * 179.97438 * 11 10 9 13 13 C 1.47153 * 111.00036 * 62.61950 * 12 11 10 14 14 C 1.52900 * 108.50760 * 52.15582 * 13 12 11 15 15 C 1.50722 * 109.96287 * 50.37949 * 14 13 12 16 16 C 1.38674 * 118.49408 * 163.12896 * 15 14 13 17 17 C 1.38025 * 120.34884 * 179.84271 * 16 15 14 18 18 C 1.38264 * 119.83203 * 359.97236 * 17 16 15 19 19 C 1.38011 * 119.86608 * 0.07628 * 18 17 16 20 20 C 1.37838 * 121.65837 * 343.10894 * 15 14 13 21 21 C 1.46636 * 110.99877 * 185.60801 * 12 11 10 22 22 H 1.09001 * 109.29714 * 168.83036 * 21 12 11 23 23 C 1.50702 * 109.30207 * 49.45507 * 21 12 11 24 24 O 1.20831 * 119.99652 * 297.49855 * 23 21 12 25 25 O 1.34225 * 120.00446 * 117.49978 * 23 21 12 26 26 H 0.96998 * 119.99549 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47282 * 59.99809 * 9 7 2 28 28 H 1.09002 * 109.46772 * 299.99614 * 9 7 2 29 29 H 1.09000 * 109.47498 * 59.99745 * 10 9 7 30 30 H 1.09005 * 109.46544 * 299.99595 * 10 9 7 31 31 H 1.09000 * 109.47095 * 59.99517 * 11 10 9 32 32 H 1.08998 * 109.46887 * 299.99959 * 11 10 9 33 33 H 1.08996 * 109.63513 * 171.85627 * 13 12 11 34 34 H 1.09001 * 109.63541 * 292.25357 * 13 12 11 35 35 H 1.08993 * 109.39312 * 170.53090 * 14 13 12 36 36 H 1.09003 * 109.39073 * 290.23716 * 14 13 12 37 37 H 1.08003 * 119.82183 * 359.86111 * 16 15 14 38 38 H 1.08005 * 120.08932 * 180.02562 * 17 16 15 39 39 H 1.08005 * 120.06841 * 180.09648 * 18 17 16 40 40 H 1.08003 * 119.81516 * 180.02562 * 19 18 17 41 41 H 0.96697 * 117.00529 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4801 -4.9872 0.0025 12 7 2.4346 -6.1038 0.0031 13 6 3.2575 -6.0934 1.2230 14 6 2.3278 -6.0238 2.4349 15 6 1.2613 -7.0833 2.3269 16 6 0.5469 -7.4214 3.4664 17 6 -0.4405 -8.3842 3.4104 18 6 -0.7193 -9.0145 2.2118 19 6 -0.0083 -8.6794 1.0774 20 6 0.9861 -7.7137 1.1325 21 6 1.7405 -7.3885 -0.1301 22 1 2.4706 -8.1739 -0.3255 23 6 0.7735 -7.3151 -1.2836 24 8 -0.1443 -6.5298 -1.2534 25 8 0.9317 -8.1220 -2.3445 26 1 -0.4849 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8904 29 1 2.8711 -3.6041 0.8922 30 1 2.8724 -3.6048 -0.8878 31 1 0.8538 -5.0455 -0.8877 32 1 0.8531 -5.0442 0.8922 33 1 3.8533 -7.0049 1.2706 34 1 3.9165 -5.2253 1.2130 35 1 2.9064 -6.1842 3.3446 36 1 1.8585 -5.0408 2.4750 37 1 0.7642 -6.9286 4.4026 38 1 -0.9945 -8.6440 4.3003 39 1 -1.4922 -9.7673 2.1632 40 1 -0.2271 -9.1720 0.1414 41 1 0.2862 -8.0386 -3.0597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043594243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:11 Heat of formation + Delta-G solvation = -60.287699 kcal Electronic energy + Delta-G solvation = -23446.021750 eV Core-core repulsion = 20097.562997 eV Total energy + Delta-G solvation = -3348.458753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36704 -39.48695 -37.52516 -36.08280 -33.88205 -32.94766 -32.02993 -30.49053 -29.47628 -27.16504 -25.38523 -24.01576 -22.99614 -22.25326 -21.36505 -20.11017 -19.01343 -18.17536 -17.19174 -16.66139 -16.12013 -15.85465 -15.56454 -15.16203 -14.88159 -14.47962 -14.07970 -13.92726 -13.59271 -13.43524 -13.18061 -12.63844 -12.49795 -12.26288 -12.15515 -11.82144 -11.59729 -11.49003 -11.28880 -11.07172 -10.82494 -10.80216 -10.66354 -10.46602 -9.99014 -9.47229 -9.30152 -8.97854 -8.89832 -8.69610 -8.29465 -8.26315 -5.93805 -3.96072 1.16168 1.26824 2.09799 2.90832 3.34285 3.41486 3.45770 3.66019 4.07803 4.45313 4.51472 4.62416 4.77401 4.90324 5.04938 5.09823 5.15166 5.28244 5.40827 5.41661 5.44302 5.51978 5.78126 5.85577 5.88118 5.91842 6.03418 6.19639 6.27003 6.33988 6.37587 6.46450 6.55913 6.69654 6.81179 6.86413 7.07106 7.24752 7.29132 7.76203 7.88024 7.91455 8.07631 8.49605 9.11704 9.67550 11.17638 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.004302 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.980644 B = 6507.758246 C = 7035.415450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.103 4.103 11 C 0.026 3.974 12 N -0.513 5.513 13 C 0.056 3.944 14 C -0.127 4.127 15 C -0.054 4.054 16 C -0.118 4.118 17 C -0.113 4.113 18 C -0.124 4.124 19 C -0.108 4.108 20 C -0.107 4.107 21 C 0.135 3.865 22 H 0.119 0.881 23 C 0.487 3.513 24 O -0.487 6.487 25 O -0.515 6.515 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.441 -21.207 3.618 21.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.140 4.140 11 C -0.100 4.100 12 N -0.237 5.237 13 C -0.071 4.071 14 C -0.165 4.165 15 C -0.055 4.055 16 C -0.136 4.136 17 C -0.131 4.131 18 C -0.142 4.142 19 C -0.126 4.126 20 C -0.109 4.109 21 C 0.025 3.975 22 H 0.136 0.864 23 C 0.328 3.672 24 O -0.373 6.373 25 O -0.327 6.327 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.135 0.865 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 2.641 -20.835 3.504 21.292 hybrid contribution -0.763 0.895 0.244 1.201 sum 1.879 -19.941 3.748 20.377 Atomic orbital electron populations 1.69994 1.06057 1.26348 1.51088 1.25034 0.94814 0.99207 0.95478 0.86560 0.80133 0.83935 0.77517 1.19728 1.21055 1.21101 1.21287 0.93013 0.91022 1.50179 0.92647 1.19045 0.93971 0.91205 0.97192 1.21656 0.99092 0.92765 1.00534 1.22965 0.94044 0.89801 1.03155 1.62855 1.22905 1.00286 1.37623 1.22265 0.95328 1.03529 0.85988 1.21235 0.96292 0.98427 1.00543 1.19545 0.97343 0.96181 0.92384 1.21110 0.96427 0.98039 0.98028 1.21119 0.97523 0.96544 0.97899 1.21015 0.99885 1.00496 0.92803 1.21029 0.95719 0.97245 0.98625 1.19778 0.98382 0.98144 0.94565 1.20137 0.93613 0.96377 0.87408 0.86379 1.23003 0.84560 0.77125 0.82546 1.90738 1.31950 1.34992 1.79588 1.84515 1.57651 1.60397 1.30094 0.93141 0.96607 0.96868 0.93513 0.92770 0.88579 0.93958 0.90578 0.88391 0.89852 0.88677 0.85718 0.85916 0.85988 0.86532 0.73112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.29 55.43 0.74 -27.02 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.10 -2.21 4.93 -26.73 -0.13 -2.34 16 11 C 0.03 0.50 3.53 -3.82 -0.01 0.49 16 12 N -0.51 -7.85 4.91 -229.55 -1.13 -8.97 16 13 C 0.06 0.72 5.49 -3.74 -0.02 0.70 16 14 C -0.13 -1.62 5.15 -27.92 -0.14 -1.77 16 15 C -0.05 -0.72 5.08 -104.60 -0.53 -1.25 16 16 C -0.12 -1.41 9.66 -39.50 -0.38 -1.79 16 17 C -0.11 -1.23 10.05 -39.65 -0.40 -1.63 16 18 C -0.12 -1.37 10.05 -39.65 -0.40 -1.77 16 19 C -0.11 -1.32 9.08 -39.48 -0.36 -1.68 16 20 C -0.11 -1.45 4.90 -104.62 -0.51 -1.96 16 21 C 0.13 1.82 2.74 -70.20 -0.19 1.63 16 22 H 0.12 1.34 8.13 -51.93 -0.42 0.92 16 23 C 0.49 6.96 5.63 36.01 0.20 7.16 16 24 O -0.49 -8.71 14.46 -18.75 -0.27 -8.99 16 25 O -0.51 -5.52 13.42 -39.24 -0.53 -6.05 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.95 6.51 -51.93 -0.34 0.61 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 2.04 5.00 -51.93 -0.26 1.78 16 32 H 0.04 0.85 5.46 -51.93 -0.28 0.57 16 33 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 34 H 0.10 1.28 6.80 -51.93 -0.35 0.93 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.44 6.61 -51.93 -0.34 1.10 16 37 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 38 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 40 H 0.12 1.28 7.33 -52.48 -0.38 0.89 16 41 H 0.41 2.71 9.10 45.56 0.41 3.12 16 LS Contribution 328.53 15.07 4.95 4.95 Total: -1.00 -34.37 328.53 -9.58 -43.95 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.89 Total: 2.56 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -3.43 Total: -17.50 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.39 Total: -35.99 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.80 Total: -15.03 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.37 -9.58 -43.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043594243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.337 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds