Wall clock time and date at job start Tue Mar 31 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00249 * 2 1 4 4 H 1.48504 * 109.47200 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47158 * 299.99758 * 3 2 1 6 6 H 1.48495 * 109.47089 * 59.99823 * 3 2 1 7 7 C 1.37879 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99756 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99887 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46842 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47185 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47338 * 179.97438 * 11 10 9 13 13 C 1.47153 * 111.00036 * 62.61950 * 12 11 10 14 14 C 1.52900 * 108.50760 * 52.15582 * 13 12 11 15 15 C 1.50722 * 109.96287 * 50.37949 * 14 13 12 16 16 C 1.38674 * 118.49408 * 163.12896 * 15 14 13 17 17 C 1.38025 * 120.34884 * 179.84271 * 16 15 14 18 18 C 1.38264 * 119.83203 * 359.97236 * 17 16 15 19 19 C 1.38011 * 119.86608 * 0.07628 * 18 17 16 20 20 C 1.37838 * 121.65837 * 343.10894 * 15 14 13 21 21 C 1.46636 * 110.99877 * 185.60801 * 12 11 10 22 22 H 1.09001 * 109.29714 * 168.83036 * 21 12 11 23 23 C 1.50702 * 109.30207 * 49.45507 * 21 12 11 24 24 O 1.20831 * 119.99652 * 297.49855 * 23 21 12 25 25 O 1.34225 * 120.00446 * 117.49978 * 23 21 12 26 26 H 0.96998 * 119.99549 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47282 * 59.99809 * 9 7 2 28 28 H 1.09002 * 109.46772 * 299.99614 * 9 7 2 29 29 H 1.09000 * 109.47498 * 59.99745 * 10 9 7 30 30 H 1.09005 * 109.46544 * 299.99595 * 10 9 7 31 31 H 1.09000 * 109.47095 * 59.99517 * 11 10 9 32 32 H 1.08998 * 109.46887 * 299.99959 * 11 10 9 33 33 H 1.08996 * 109.63513 * 171.85627 * 13 12 11 34 34 H 1.09001 * 109.63541 * 292.25357 * 13 12 11 35 35 H 1.08993 * 109.39312 * 170.53090 * 14 13 12 36 36 H 1.09003 * 109.39073 * 290.23716 * 14 13 12 37 37 H 1.08003 * 119.82183 * 359.86111 * 16 15 14 38 38 H 1.08005 * 120.08932 * 180.02562 * 17 16 15 39 39 H 1.08005 * 120.06841 * 180.09648 * 18 17 16 40 40 H 1.08003 * 119.81516 * 180.02562 * 19 18 17 41 41 H 0.96697 * 117.00529 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4801 -4.9872 0.0025 12 7 2.4346 -6.1038 0.0031 13 6 3.2575 -6.0934 1.2230 14 6 2.3278 -6.0238 2.4349 15 6 1.2613 -7.0833 2.3269 16 6 0.5469 -7.4214 3.4664 17 6 -0.4405 -8.3842 3.4104 18 6 -0.7193 -9.0145 2.2118 19 6 -0.0083 -8.6794 1.0774 20 6 0.9861 -7.7137 1.1325 21 6 1.7405 -7.3885 -0.1301 22 1 2.4706 -8.1739 -0.3255 23 6 0.7735 -7.3151 -1.2836 24 8 -0.1443 -6.5298 -1.2534 25 8 0.9317 -8.1220 -2.3445 26 1 -0.4849 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8904 29 1 2.8711 -3.6041 0.8922 30 1 2.8724 -3.6048 -0.8878 31 1 0.8538 -5.0455 -0.8877 32 1 0.8531 -5.0442 0.8922 33 1 3.8533 -7.0049 1.2706 34 1 3.9165 -5.2253 1.2130 35 1 2.9064 -6.1842 3.3446 36 1 1.8585 -5.0408 2.4750 37 1 0.7642 -6.9286 4.4026 38 1 -0.9945 -8.6440 4.3003 39 1 -1.4922 -9.7673 2.1632 40 1 -0.2271 -9.1720 0.1414 41 1 0.2862 -8.0386 -3.0597 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043594243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:11 Heat of formation + Delta-G solvation = -83.413701 kcal Electronic energy + Delta-G solvation = -23447.024569 eV Core-core repulsion = 20097.562997 eV Total energy + Delta-G solvation = -3349.461572 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.44698 -40.51286 -38.61728 -37.15234 -35.85753 -33.94837 -33.79020 -31.84928 -30.42526 -28.86902 -26.72977 -25.45395 -24.06245 -23.65350 -22.39548 -21.77693 -20.19170 -19.25496 -18.52482 -18.15859 -17.65929 -16.91428 -16.68367 -16.48678 -16.14924 -16.00757 -15.23515 -15.18202 -14.80116 -14.65479 -14.31802 -14.17102 -13.75227 -13.57753 -13.48881 -13.17726 -13.11126 -12.80032 -12.58461 -12.51638 -12.31854 -12.23806 -12.16411 -11.79304 -11.62910 -11.41234 -11.18231 -10.97076 -10.57071 -9.80978 -9.62670 -9.49225 -8.20240 -6.32485 0.25244 0.36692 0.98473 1.39440 1.40496 1.54243 1.94985 2.40531 2.76173 2.87662 3.12643 3.47238 3.68002 3.86518 4.06115 4.08417 4.14232 4.18923 4.22489 4.35022 4.41361 4.52276 4.57443 4.68708 4.71768 4.80760 4.89137 4.97224 5.00184 5.09428 5.17448 5.25809 5.37737 5.49029 5.50154 5.53718 5.60243 5.69628 5.83604 5.86564 5.90981 6.00074 6.23729 6.84853 6.91188 7.37203 8.92445 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.004302 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.980644 B = 6507.758246 C = 7035.415450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.029 3.971 10 C -0.086 4.086 11 C 0.048 3.952 12 N -0.515 5.515 13 C 0.054 3.946 14 C -0.122 4.122 15 C -0.075 4.075 16 C -0.129 4.129 17 C -0.115 4.115 18 C -0.127 4.127 19 C -0.120 4.120 20 C -0.124 4.124 21 C 0.133 3.867 22 H 0.146 0.854 23 C 0.491 3.509 24 O -0.532 6.532 25 O -0.501 6.501 26 H 0.263 0.737 27 H -0.020 1.020 28 H -0.016 1.016 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.063 0.937 37 H 0.139 0.861 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.126 0.874 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 -22.322 4.272 23.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.201 4.201 3 Si 0.794 3.206 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.577 4.577 8 H 0.082 0.918 9 C -0.008 4.008 10 C -0.124 4.124 11 C -0.080 4.080 12 N -0.239 5.239 13 C -0.073 4.073 14 C -0.160 4.160 15 C -0.075 4.075 16 C -0.147 4.147 17 C -0.133 4.133 18 C -0.145 4.145 19 C -0.139 4.139 20 C -0.126 4.126 21 C 0.023 3.977 22 H 0.164 0.836 23 C 0.334 3.666 24 O -0.421 6.421 25 O -0.314 6.314 26 H 0.072 0.928 27 H -0.002 1.002 28 H 0.003 0.997 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.081 0.919 37 H 0.157 0.843 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.143 0.857 41 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 4.173 -21.991 4.139 22.763 hybrid contribution -1.298 1.136 0.019 1.725 sum 2.874 -20.855 4.159 21.459 Atomic orbital electron populations 1.70145 1.08072 1.27706 1.51843 1.26065 0.95747 1.03645 0.94647 0.85332 0.79177 0.78366 0.77763 1.18166 1.20450 1.20266 1.21700 0.93612 0.92015 1.50325 0.91756 1.18918 0.94314 0.93527 0.94067 1.21389 0.97807 0.92167 1.01008 1.22486 0.93893 0.90255 1.01330 1.62759 1.21938 0.99965 1.39201 1.22409 0.95029 1.04949 0.84898 1.21170 0.96368 0.96742 1.01735 1.19712 0.98155 0.96657 0.93012 1.21394 0.96580 0.98421 0.98276 1.21492 0.97077 0.95758 0.98938 1.21385 0.99953 1.00721 0.92414 1.21239 0.95694 0.97303 0.99628 1.19864 0.99255 0.99037 0.94427 1.20286 0.94157 0.95772 0.87439 0.83620 1.23221 0.83836 0.76425 0.83163 1.90732 1.33850 1.36953 1.80558 1.84471 1.58050 1.59037 1.29865 0.92820 1.00153 0.99715 0.92068 0.92905 0.90855 0.95554 0.87493 0.88706 0.87305 0.91863 0.84290 0.83254 0.83460 0.85656 0.70954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.66 13.29 21.45 0.28 -59.37 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 3 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.54 -31.94 9.11 25.60 0.23 -31.71 16 8 H 0.06 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.67 4.97 29.85 0.15 1.82 16 10 C -0.09 -3.81 4.93 30.60 0.15 -3.66 16 11 C 0.05 1.89 3.53 86.30 0.30 2.19 16 12 N -0.51 -15.51 4.91 -880.15 -4.32 -19.83 16 13 C 0.05 1.31 5.49 86.22 0.47 1.78 16 14 C -0.12 -3.05 5.15 29.82 0.15 -2.90 16 15 C -0.08 -1.95 5.08 -19.85 -0.10 -2.05 16 16 C -0.13 -2.92 9.66 22.32 0.22 -2.70 16 17 C -0.11 -2.27 10.05 22.23 0.22 -2.05 16 18 C -0.13 -2.56 10.05 22.22 0.22 -2.34 16 19 C -0.12 -2.81 9.08 22.33 0.20 -2.61 16 20 C -0.12 -3.26 4.90 -19.87 -0.10 -3.35 16 21 C 0.13 3.47 2.74 43.45 0.12 3.59 16 22 H 0.15 2.95 8.13 -2.39 -0.02 2.93 16 23 C 0.49 13.88 5.63 71.24 0.40 14.28 16 24 O -0.53 -19.66 14.46 21.95 0.32 -19.34 16 25 O -0.50 -10.04 13.42 -51.37 -0.69 -10.73 16 26 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 27 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 28 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 29 H 0.06 2.51 6.51 -2.39 -0.02 2.50 16 30 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.07 3.28 5.00 -2.39 -0.01 3.27 16 32 H 0.03 1.12 5.46 -2.39 -0.01 1.10 16 33 H 0.11 1.97 8.05 -2.39 -0.02 1.95 16 34 H 0.09 2.35 6.80 -2.39 -0.02 2.34 16 35 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 1.98 6.61 -2.39 -0.02 1.97 16 37 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 38 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.13 2.59 7.33 -2.91 -0.02 2.57 16 41 H 0.43 5.11 9.10 -74.06 -0.67 4.43 16 Total: -1.00 -76.62 328.53 1.11 -75.52 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.37 Total: 15.75 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: 3.11 Total: -29.46 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -4.04 Total: -79.20 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.37 Total: -30.07 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -76.62 1.11 -75.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043594243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.898 kcal (2) G-P(sol) polarization free energy of solvation -76.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds