Wall clock time and date at job start Tue Mar 31 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00386 * 2 1 4 4 H 1.48501 * 109.47674 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47010 * 300.00288 * 3 2 1 6 6 H 1.48506 * 109.47328 * 59.99620 * 3 2 1 7 7 C 1.37880 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00104 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47480 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47150 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46767 * 180.02562 * 11 10 9 13 13 C 1.47165 * 110.99901 * 67.03105 * 12 11 10 14 14 C 1.52893 * 108.50513 * 194.70222 * 13 12 11 15 15 C 1.50720 * 109.96158 * 309.65749 * 14 13 12 16 16 C 1.38683 * 118.48629 * 196.70827 * 15 14 13 17 17 C 1.38028 * 120.35103 * 180.16457 * 16 15 14 18 18 C 1.38267 * 119.82968 * 0.03895 * 17 16 15 19 19 C 1.38020 * 119.86540 * 359.90500 * 18 17 16 20 20 C 1.37829 * 121.66645 * 16.75990 * 15 14 13 21 21 C 1.46635 * 110.99784 * 190.00222 * 12 11 10 22 22 H 1.09009 * 109.30535 * 304.15047 * 21 12 11 23 23 C 1.50700 * 109.30266 * 63.73440 * 21 12 11 24 24 O 1.20822 * 119.99958 * 359.97438 * 23 21 12 25 25 O 1.34234 * 120.00068 * 180.02562 * 23 21 12 26 26 H 0.97006 * 119.99741 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47236 * 59.99565 * 9 7 2 28 28 H 1.08997 * 109.47186 * 299.99706 * 9 7 2 29 29 H 1.09004 * 109.46636 * 59.99939 * 10 9 7 30 30 H 1.08997 * 109.47276 * 300.00392 * 10 9 7 31 31 H 1.09004 * 109.47248 * 60.00501 * 11 10 9 32 32 H 1.08997 * 109.47504 * 300.00439 * 11 10 9 33 33 H 1.08991 * 109.62958 * 314.40471 * 13 12 11 34 34 H 1.08999 * 109.63042 * 74.99930 * 13 12 11 35 35 H 1.08999 * 109.39193 * 69.81088 * 14 13 12 36 36 H 1.09002 * 109.38658 * 189.61143 * 14 13 12 37 37 H 1.07997 * 119.82698 * 0.18781 * 16 15 14 38 38 H 1.08000 * 120.08686 * 180.02562 * 17 16 15 39 39 H 1.07997 * 120.06662 * 179.89316 * 18 17 16 40 40 H 1.07994 * 119.81289 * 180.02562 * 19 18 17 41 41 H 0.96698 * 117.00153 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4348 -6.1037 0.0018 13 6 3.1849 -6.1554 1.2668 14 6 4.3916 -7.0752 1.0782 15 6 3.9508 -8.3859 0.4786 16 6 4.8124 -9.4701 0.5523 17 6 4.4491 -10.6876 0.0129 18 6 3.2201 -10.8268 -0.6050 19 6 2.3614 -9.7488 -0.6779 20 6 2.7242 -8.5249 -0.1345 21 6 1.7515 -7.3793 -0.2353 22 1 0.9659 -7.5111 0.5088 23 6 1.1372 -7.3670 -1.6114 24 8 1.2577 -6.3945 -2.3181 25 8 0.4552 -8.4362 -2.0515 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8718 -3.6044 0.8906 30 1 2.8719 -3.6044 -0.8894 31 1 0.8532 -5.0451 -0.8886 32 1 0.8537 -5.0446 0.8913 33 1 3.5254 -5.1546 1.5319 34 1 2.5446 -6.5487 2.0564 35 1 5.1109 -6.5969 0.4134 36 1 4.8599 -7.2606 2.0449 37 1 5.7725 -9.3614 1.0347 38 1 5.1233 -11.5292 0.0731 39 1 2.9327 -11.7772 -1.0299 40 1 1.4014 -9.8586 -1.1604 41 1 0.0790 -8.3814 -2.9406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043594244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:15 Heat of formation + Delta-G solvation = -62.496274 kcal Electronic energy + Delta-G solvation = -22965.178674 eV Core-core repulsion = 19616.624150 eV Total energy + Delta-G solvation = -3348.554524 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.05924 -39.40480 -37.58607 -35.97768 -34.07733 -33.07383 -32.29185 -30.51236 -29.49743 -27.08183 -25.30346 -23.86211 -23.07701 -21.98461 -21.33855 -19.93689 -19.53982 -18.22238 -16.98035 -16.64948 -16.25190 -15.85393 -15.57041 -15.28872 -14.81977 -14.46063 -14.14963 -13.92542 -13.69372 -13.45463 -13.07371 -12.84733 -12.42295 -12.32490 -12.04280 -11.84755 -11.65719 -11.49125 -11.27892 -10.94049 -10.81782 -10.77489 -10.58250 -10.42666 -10.13617 -9.48903 -9.29898 -8.99822 -8.96654 -8.71988 -8.29522 -8.23138 -5.94674 -3.96218 1.12997 1.25659 2.23438 2.81140 3.34697 3.41877 3.46597 3.63482 3.90424 4.42095 4.51300 4.62462 4.79673 4.94877 5.04460 5.05759 5.09198 5.27287 5.35701 5.41247 5.43452 5.63714 5.73478 5.80285 5.84111 5.92829 5.99670 6.09314 6.30031 6.32785 6.38360 6.44421 6.50489 6.73308 6.76366 6.86545 7.07882 7.26007 7.30320 7.74962 7.90460 7.91953 8.06440 8.49717 9.11139 9.67364 11.16965 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026153 B = 0.003582 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.345784 B = 7814.012066 C = 8611.837288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.099 4.099 11 C 0.044 3.956 12 N -0.515 5.515 13 C 0.050 3.950 14 C -0.081 4.081 15 C -0.051 4.051 16 C -0.126 4.126 17 C -0.115 4.115 18 C -0.129 4.129 19 C -0.112 4.112 20 C -0.083 4.083 21 C 0.137 3.863 22 H 0.086 0.914 23 C 0.483 3.517 24 O -0.476 6.476 25 O -0.519 6.519 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.029 0.971 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.145 0.855 41 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 -23.812 1.095 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.137 4.137 11 C -0.082 4.082 12 N -0.241 5.241 13 C -0.077 4.077 14 C -0.118 4.118 15 C -0.052 4.052 16 C -0.144 4.144 17 C -0.133 4.133 18 C -0.147 4.147 19 C -0.130 4.130 20 C -0.083 4.083 21 C 0.027 3.973 22 H 0.103 0.897 23 C 0.323 3.677 24 O -0.360 6.360 25 O -0.332 6.332 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.047 0.953 33 H 0.117 0.883 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.163 0.837 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.906 -23.337 0.893 24.089 hybrid contribution -0.456 0.809 -0.001 0.929 sum 5.451 -22.527 0.893 23.194 Atomic orbital electron populations 1.69982 1.06058 1.26361 1.51250 1.25031 0.94843 0.99244 0.95471 0.86544 0.80158 0.83851 0.77496 1.19717 1.21053 1.21102 1.21287 0.93085 0.90997 1.50008 0.92603 1.19069 0.94052 0.91346 0.97086 1.21601 0.99094 0.92222 1.00755 1.22600 0.93956 0.90578 1.01044 1.62142 1.27236 1.00365 1.34320 1.22276 0.94605 1.01402 0.89417 1.20652 0.98446 0.91910 1.00797 1.19635 0.92838 0.95611 0.97095 1.21082 0.99527 0.92652 1.01171 1.21137 0.96726 0.97389 0.98006 1.21051 0.94518 0.98684 1.00494 1.21617 1.00832 0.91889 0.98666 1.19124 0.94694 0.93486 1.01031 1.19893 0.94910 0.91250 0.91246 0.89693 1.23021 0.75504 0.79931 0.89272 1.90774 1.55096 1.33656 1.56443 1.84492 1.66170 1.43203 1.39322 0.93153 0.96531 0.96887 0.93528 0.92324 0.89421 0.95311 0.88252 0.94199 0.89280 0.90118 0.85907 0.86130 0.86019 0.83720 0.73277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.10 -2.15 5.14 -26.73 -0.14 -2.28 16 11 C 0.04 0.82 4.56 -3.82 -0.02 0.81 16 12 N -0.52 -8.16 4.19 -229.54 -0.96 -9.12 16 13 C 0.05 0.67 5.44 -3.73 -0.02 0.65 16 14 C -0.08 -0.91 5.95 -27.93 -0.17 -1.07 16 15 C -0.05 -0.61 5.77 -104.60 -0.60 -1.21 16 16 C -0.13 -1.26 9.66 -39.49 -0.38 -1.64 16 17 C -0.11 -1.05 10.05 -39.65 -0.40 -1.45 16 18 C -0.13 -1.22 10.05 -39.65 -0.40 -1.62 16 19 C -0.11 -1.22 8.98 -39.48 -0.35 -1.58 16 20 C -0.08 -1.04 5.47 -104.63 -0.57 -1.61 16 21 C 0.14 1.89 2.28 -70.20 -0.16 1.73 16 22 H 0.09 1.08 8.13 -51.92 -0.42 0.65 16 23 C 0.48 6.83 7.08 36.01 0.25 7.09 16 24 O -0.48 -8.61 14.93 -18.75 -0.28 -8.89 16 25 O -0.52 -5.10 10.43 -39.27 -0.41 -5.51 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.95 6.34 -51.93 -0.33 0.62 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.09 1.77 5.55 -51.93 -0.29 1.48 16 32 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 33 H 0.10 1.38 6.04 -51.93 -0.31 1.07 16 34 H 0.04 0.49 8.05 -51.93 -0.42 0.08 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.15 1.43 5.25 -52.49 -0.28 1.16 16 41 H 0.41 2.38 9.10 45.56 0.41 2.80 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -34.32 331.15 -9.43 -43.75 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.98 Total: 0.09 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -3.50 Total: -15.57 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.23 Total: -35.98 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.69 Total: -14.40 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.32 -9.43 -43.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043594244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.749 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds