Wall clock time and date at job start Tue Mar 31 2020 06:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00386 * 2 1 4 4 H 1.48501 * 109.47674 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47010 * 300.00288 * 3 2 1 6 6 H 1.48506 * 109.47328 * 59.99620 * 3 2 1 7 7 C 1.37880 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00104 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47480 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47150 * 179.97438 * 10 9 7 12 12 N 1.46902 * 109.46767 * 180.02562 * 11 10 9 13 13 C 1.47165 * 110.99901 * 67.03105 * 12 11 10 14 14 C 1.52893 * 108.50513 * 194.70222 * 13 12 11 15 15 C 1.50720 * 109.96158 * 309.65749 * 14 13 12 16 16 C 1.38683 * 118.48629 * 196.70827 * 15 14 13 17 17 C 1.38028 * 120.35103 * 180.16457 * 16 15 14 18 18 C 1.38267 * 119.82968 * 0.03895 * 17 16 15 19 19 C 1.38020 * 119.86540 * 359.90500 * 18 17 16 20 20 C 1.37829 * 121.66645 * 16.75990 * 15 14 13 21 21 C 1.46635 * 110.99784 * 190.00222 * 12 11 10 22 22 H 1.09009 * 109.30535 * 304.15047 * 21 12 11 23 23 C 1.50700 * 109.30266 * 63.73440 * 21 12 11 24 24 O 1.20822 * 119.99958 * 359.97438 * 23 21 12 25 25 O 1.34234 * 120.00068 * 180.02562 * 23 21 12 26 26 H 0.97006 * 119.99741 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47236 * 59.99565 * 9 7 2 28 28 H 1.08997 * 109.47186 * 299.99706 * 9 7 2 29 29 H 1.09004 * 109.46636 * 59.99939 * 10 9 7 30 30 H 1.08997 * 109.47276 * 300.00392 * 10 9 7 31 31 H 1.09004 * 109.47248 * 60.00501 * 11 10 9 32 32 H 1.08997 * 109.47504 * 300.00439 * 11 10 9 33 33 H 1.08991 * 109.62958 * 314.40471 * 13 12 11 34 34 H 1.08999 * 109.63042 * 74.99930 * 13 12 11 35 35 H 1.08999 * 109.39193 * 69.81088 * 14 13 12 36 36 H 1.09002 * 109.38658 * 189.61143 * 14 13 12 37 37 H 1.07997 * 119.82698 * 0.18781 * 16 15 14 38 38 H 1.08000 * 120.08686 * 180.02562 * 17 16 15 39 39 H 1.07997 * 120.06662 * 179.89316 * 18 17 16 40 40 H 1.07994 * 119.81289 * 180.02562 * 19 18 17 41 41 H 0.96698 * 117.00153 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4348 -6.1037 0.0018 13 6 3.1849 -6.1554 1.2668 14 6 4.3916 -7.0752 1.0782 15 6 3.9508 -8.3859 0.4786 16 6 4.8124 -9.4701 0.5523 17 6 4.4491 -10.6876 0.0129 18 6 3.2201 -10.8268 -0.6050 19 6 2.3614 -9.7488 -0.6779 20 6 2.7242 -8.5249 -0.1345 21 6 1.7515 -7.3793 -0.2353 22 1 0.9659 -7.5111 0.5088 23 6 1.1372 -7.3670 -1.6114 24 8 1.2577 -6.3945 -2.3181 25 8 0.4552 -8.4362 -2.0515 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8718 -3.6044 0.8906 30 1 2.8719 -3.6044 -0.8894 31 1 0.8532 -5.0451 -0.8886 32 1 0.8537 -5.0446 0.8913 33 1 3.5254 -5.1546 1.5319 34 1 2.5446 -6.5487 2.0564 35 1 5.1109 -6.5969 0.4134 36 1 4.8599 -7.2606 2.0449 37 1 5.7725 -9.3614 1.0347 38 1 5.1233 -11.5292 0.0731 39 1 2.9327 -11.7772 -1.0299 40 1 1.4014 -9.8586 -1.1604 41 1 0.0790 -8.3814 -2.9406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043594244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:14 Heat of formation + Delta-G solvation = -84.684096 kcal Electronic energy + Delta-G solvation = -22966.140810 eV Core-core repulsion = 19616.624150 eV Total energy + Delta-G solvation = -3349.516660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.08909 -40.34473 -38.68018 -37.04882 -35.91643 -34.21195 -33.77569 -31.97474 -30.36333 -28.67651 -26.71112 -25.12820 -24.17235 -23.35324 -22.28503 -21.67282 -20.50090 -19.25352 -18.54108 -17.92556 -17.58409 -16.98748 -16.53484 -16.44965 -16.28368 -15.98933 -15.41083 -15.12728 -14.64814 -14.41649 -14.38396 -14.16501 -13.80612 -13.58204 -13.40624 -13.16444 -12.87783 -12.75132 -12.69102 -12.53168 -12.42735 -12.21501 -11.79088 -11.74954 -11.53853 -11.39500 -11.16822 -11.04832 -10.56066 -9.80413 -9.51456 -9.39668 -8.20672 -6.31834 0.33270 0.49823 1.14047 1.39189 1.40266 1.53939 1.85809 2.40432 2.72868 2.86504 3.12322 3.48618 3.74922 3.94212 4.07388 4.09022 4.16463 4.18731 4.29126 4.36091 4.40465 4.60507 4.65462 4.71282 4.79837 4.86285 4.94552 4.98889 5.06751 5.15046 5.22796 5.25359 5.48562 5.52584 5.59441 5.64894 5.65687 5.72496 5.83979 5.90430 5.96717 6.13420 6.25399 6.84554 6.95663 7.37239 8.91835 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026153 B = 0.003582 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.345784 B = 7814.012066 C = 8611.837288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.028 3.972 10 C -0.082 4.082 11 C 0.059 3.941 12 N -0.527 5.527 13 C 0.047 3.953 14 C -0.074 4.074 15 C -0.070 4.070 16 C -0.129 4.129 17 C -0.113 4.113 18 C -0.130 4.130 19 C -0.121 4.121 20 C -0.104 4.104 21 C 0.134 3.866 22 H 0.095 0.905 23 C 0.489 3.511 24 O -0.525 6.525 25 O -0.500 6.500 26 H 0.264 0.736 27 H -0.016 1.016 28 H -0.006 1.006 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.263 -25.523 1.729 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.120 4.120 11 C -0.068 4.068 12 N -0.253 5.253 13 C -0.080 4.080 14 C -0.111 4.111 15 C -0.070 4.070 16 C -0.147 4.147 17 C -0.131 4.131 18 C -0.148 4.148 19 C -0.139 4.139 20 C -0.104 4.104 21 C 0.025 3.975 22 H 0.112 0.888 23 C 0.331 3.669 24 O -0.413 6.413 25 O -0.315 6.315 26 H 0.072 0.928 27 H 0.002 0.998 28 H 0.012 0.988 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 7.647 -25.097 1.526 26.280 hybrid contribution -1.041 1.203 -0.223 1.606 sum 6.606 -23.894 1.303 24.825 Atomic orbital electron populations 1.70115 1.07872 1.27721 1.51800 1.26025 0.95819 1.03501 0.94675 0.85351 0.79071 0.78499 0.77835 1.18510 1.20466 1.20036 1.21697 0.93542 0.92247 1.50388 0.92168 1.18947 0.94357 0.93179 0.94507 1.21321 0.97892 0.92214 1.00589 1.22219 0.93867 0.90439 1.00308 1.62011 1.26738 1.00559 1.35954 1.22368 0.95417 1.01595 0.88597 1.20623 0.97142 0.91292 1.02079 1.19790 0.93120 0.96353 0.97759 1.21361 1.00009 0.92353 1.00977 1.21532 0.96921 0.97931 0.96694 1.21399 0.94334 0.99178 0.99900 1.21737 1.01525 0.91834 0.98820 1.19141 0.95064 0.93436 1.02791 1.19961 0.95679 0.90690 0.91194 0.88824 1.23185 0.74854 0.79732 0.89172 1.90762 1.57186 1.35538 1.57814 1.84442 1.65169 1.41114 1.40740 0.92758 0.99804 0.98767 0.92158 0.93784 0.91352 0.94915 0.89274 0.93199 0.90064 0.87432 0.83787 0.83291 0.83524 0.83264 0.71057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.78 13.29 21.45 0.28 -58.50 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.30 16 3 Si 0.97 45.66 29.54 68.60 2.03 47.68 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.54 -32.26 9.11 25.60 0.23 -32.03 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.56 4.97 29.85 0.15 1.71 16 10 C -0.08 -3.72 5.14 30.59 0.16 -3.56 16 11 C 0.06 2.28 4.56 86.30 0.39 2.67 16 12 N -0.53 -16.95 4.19 -880.13 -3.69 -20.65 16 13 C 0.05 1.23 5.44 86.22 0.47 1.70 16 14 C -0.07 -1.57 5.95 29.82 0.18 -1.39 16 15 C -0.07 -1.53 5.77 -19.85 -0.11 -1.65 16 16 C -0.13 -2.20 9.66 22.33 0.22 -1.99 16 17 C -0.11 -1.67 10.05 22.23 0.22 -1.45 16 18 C -0.13 -2.06 10.05 22.22 0.22 -1.84 16 19 C -0.12 -2.42 8.98 22.34 0.20 -2.22 16 20 C -0.10 -2.48 5.47 -19.87 -0.11 -2.59 16 21 C 0.13 3.69 2.28 43.45 0.10 3.79 16 22 H 0.09 2.36 8.13 -2.38 -0.02 2.34 16 23 C 0.49 13.98 7.08 71.24 0.50 14.48 16 24 O -0.52 -19.78 14.93 21.98 0.33 -19.45 16 25 O -0.50 -9.41 10.43 -51.46 -0.54 -9.95 16 26 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 27 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 28 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.06 2.53 6.34 -2.39 -0.02 2.51 16 30 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 2.93 5.55 -2.39 -0.01 2.91 16 32 H 0.03 1.21 8.11 -2.39 -0.02 1.19 16 33 H 0.09 2.48 6.04 -2.39 -0.01 2.46 16 34 H 0.05 1.20 8.05 -2.39 -0.02 1.18 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 39 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.15 2.69 5.25 -2.91 -0.02 2.67 16 41 H 0.43 4.54 9.10 -74.06 -0.67 3.87 16 Total: -1.00 -76.02 331.15 2.06 -73.96 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.37 Total: 10.96 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 3.28 Total: -24.05 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -3.41 Total: -79.14 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.21 Total: -29.40 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -76.02 2.06 -73.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043594244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.727 kcal (2) G-P(sol) polarization free energy of solvation -76.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds