Wall clock time and date at job start Tue Mar 31 2020 06:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00491 * 2 1 4 4 H 1.48497 * 109.47562 * 239.99876 * 3 2 1 5 5 H 1.48501 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47507 * 119.99534 * 3 2 1 7 7 C 1.37881 * 119.99543 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00001 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47284 * 185.57060 * 11 10 9 13 13 C 1.46636 * 111.00040 * 306.65648 * 12 11 10 14 14 C 1.50630 * 110.49323 * 289.08733 * 13 12 11 15 15 C 1.38732 * 118.42154 * 162.87880 * 14 13 12 16 16 C 1.38024 * 120.37003 * 180.02562 * 15 14 13 17 17 C 1.38254 * 119.87367 * 359.49589 * 16 15 14 18 18 C 1.38039 * 119.82546 * 0.33236 * 17 16 15 19 19 C 1.37826 * 121.84700 * 342.48910 * 14 13 12 20 20 C 1.50714 * 121.66718 * 0.43479 * 19 14 13 21 21 C 1.47155 * 111.00310 * 183.66075 * 12 11 10 22 22 H 1.08999 * 109.63567 * 171.85406 * 21 12 11 23 23 C 1.50702 * 109.63520 * 292.45101 * 21 12 11 24 24 O 1.20823 * 119.99648 * 359.00690 * 23 21 12 25 25 O 1.34223 * 120.00298 * 179.00594 * 23 21 12 26 26 H 0.97000 * 119.99648 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47396 * 59.99558 * 9 7 2 28 28 H 1.09005 * 109.46573 * 299.99160 * 9 7 2 29 29 H 1.09001 * 109.47303 * 59.99571 * 10 9 7 30 30 H 1.09002 * 109.46393 * 299.99749 * 10 9 7 31 31 H 1.09004 * 109.47525 * 65.56942 * 11 10 9 32 32 H 1.09004 * 109.47243 * 305.57359 * 11 10 9 33 33 H 1.09001 * 109.27240 * 49.34974 * 13 12 11 34 34 H 1.08996 * 109.27110 * 168.86175 * 13 12 11 35 35 H 1.07992 * 119.81445 * 359.75108 * 15 14 13 36 36 H 1.07998 * 120.05694 * 179.76360 * 16 15 14 37 37 H 1.08001 * 120.09065 * 180.32168 * 17 16 15 38 38 H 1.07996 * 119.82368 * 179.97438 * 18 17 16 39 39 H 1.08999 * 109.39476 * 103.24017 * 20 19 14 40 40 H 1.09003 * 109.38902 * 222.94698 * 20 19 14 41 41 H 0.96705 * 116.99907 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9872 0.0012 12 7 2.4288 -6.1005 0.1356 13 6 3.4804 -6.0207 -0.8833 14 6 2.9213 -6.3426 -2.2444 15 6 3.6549 -5.9754 -3.3632 16 6 3.1803 -6.2501 -4.6299 17 6 1.9722 -6.9041 -4.7858 18 6 1.2427 -7.2732 -3.6735 19 6 1.7160 -6.9927 -2.4004 20 6 0.8832 -7.4105 -1.2158 21 6 1.7366 -7.3964 0.0528 22 1 2.4701 -8.2014 0.0096 23 6 0.8522 -7.5761 1.2598 24 8 0.8150 -6.7223 2.1139 25 8 0.1060 -8.6846 1.3860 26 1 -0.4849 0.8401 -0.0004 27 1 0.6244 -2.5571 -0.8896 28 1 0.6239 -2.5567 0.8904 29 1 2.8718 -3.6045 0.8905 30 1 2.8716 -3.6044 -0.8895 31 1 0.9298 -5.0896 -0.9343 32 1 0.7808 -5.0026 0.8373 33 1 3.8953 -5.0128 -0.8939 34 1 4.2699 -6.7322 -0.6418 35 1 4.6004 -5.4679 -3.2425 36 1 3.7537 -5.9587 -5.4974 37 1 1.6000 -7.1254 -5.7751 38 1 0.2988 -7.7836 -3.7953 39 1 0.0487 -6.7192 -1.0982 40 1 0.4975 -8.4164 -1.3814 41 1 -0.4451 -8.7551 2.1775 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061449358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:52 Heat of formation + Delta-G solvation = -64.349557 kcal Electronic energy + Delta-G solvation = -23249.406235 eV Core-core repulsion = 19900.771347 eV Total energy + Delta-G solvation = -3348.634888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09045 -39.65744 -37.38882 -35.97289 -34.05512 -32.86077 -31.72707 -30.79250 -29.47020 -26.99811 -24.93637 -24.73065 -22.59938 -22.23798 -21.50594 -20.27390 -18.90491 -18.01741 -16.93898 -16.44264 -16.08489 -15.91113 -15.38357 -15.08137 -14.96178 -14.61845 -14.34466 -14.03995 -13.64590 -13.18090 -13.11142 -12.67075 -12.53587 -12.26026 -11.87056 -11.71478 -11.58801 -11.46236 -11.37453 -11.07846 -11.03897 -10.72076 -10.62592 -10.51278 -10.08014 -9.55791 -9.28639 -9.01388 -8.77572 -8.57916 -8.28287 -8.22209 -5.93830 -3.95702 1.32188 1.36332 2.23697 2.83635 3.37205 3.41113 3.43816 3.71485 3.99705 4.51229 4.61036 4.67763 4.77226 4.87274 4.95627 5.03913 5.27322 5.32317 5.41837 5.43694 5.49180 5.56133 5.63601 5.73889 5.93210 5.98174 5.99342 6.05422 6.35248 6.39815 6.48969 6.51022 6.53360 6.72599 6.79394 6.98347 7.07960 7.22046 7.30399 7.74331 7.90895 7.94523 8.06789 8.49577 9.11018 9.67632 11.17764 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.004989 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.612198 B = 5611.304789 C = 7042.008824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.105 4.105 11 C 0.042 3.958 12 N -0.508 5.508 13 C 0.085 3.915 14 C -0.104 4.104 15 C -0.109 4.109 16 C -0.120 4.120 17 C -0.123 4.123 18 C -0.115 4.115 19 C -0.077 4.077 20 C -0.107 4.107 21 C 0.095 3.905 22 H 0.119 0.881 23 C 0.480 3.520 24 O -0.482 6.482 25 O -0.522 6.522 26 H 0.260 0.740 27 H 0.012 0.988 28 H 0.016 0.984 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 -20.233 -5.833 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.142 4.142 11 C -0.085 4.085 12 N -0.230 5.230 13 C -0.043 4.043 14 C -0.106 4.106 15 C -0.128 4.128 16 C -0.138 4.138 17 C -0.141 4.141 18 C -0.133 4.133 19 C -0.078 4.078 20 C -0.146 4.146 21 C -0.015 4.015 22 H 0.137 0.863 23 C 0.320 3.680 24 O -0.367 6.367 25 O -0.334 6.334 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.814 -19.784 -5.425 20.866 hybrid contribution -0.416 0.893 -0.393 1.061 sum 3.398 -18.891 -5.817 20.056 Atomic orbital electron populations 1.69963 1.06061 1.26582 1.51005 1.25021 0.94832 0.99192 0.95437 0.86666 0.79579 0.83214 0.78578 1.20315 1.21336 1.20218 1.21201 0.92947 0.91040 1.50357 0.92771 1.19036 0.93991 0.91226 0.97070 1.21691 0.99288 0.92789 1.00468 1.22595 0.94933 0.90277 1.00674 1.62508 1.13554 1.00370 1.46565 1.21347 0.94081 1.04193 0.84646 1.20424 0.94953 0.98023 0.97156 1.21083 0.99990 0.99729 0.91992 1.21089 0.96487 0.99007 0.97215 1.21044 0.95348 0.99292 0.98400 1.21012 0.99738 1.00750 0.91832 1.19352 0.94905 0.99206 0.94296 1.21010 0.98339 1.03350 0.91855 1.21193 0.95078 0.96100 0.89178 0.86342 1.23170 0.78369 0.78750 0.87757 1.90771 1.62343 1.41972 1.41593 1.84495 1.56131 1.43322 1.49453 0.93035 0.96947 0.96516 0.92381 0.93470 0.94635 0.89611 0.87395 0.89449 0.85813 0.86135 0.86206 0.86201 0.89412 0.89079 0.73203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.29 55.43 0.74 -27.00 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.66 4.97 -27.88 -0.14 0.52 16 10 C -0.10 -2.27 4.52 -26.73 -0.12 -2.39 16 11 C 0.04 0.78 4.02 -3.83 -0.02 0.76 16 12 N -0.51 -7.79 4.57 -229.60 -1.05 -8.84 16 13 C 0.08 1.14 5.26 -5.15 -0.03 1.11 16 14 C -0.10 -1.37 5.36 -104.62 -0.56 -1.93 16 15 C -0.11 -1.34 9.65 -39.48 -0.38 -1.72 16 16 C -0.12 -1.36 10.05 -39.65 -0.40 -1.76 16 17 C -0.12 -1.36 10.05 -39.65 -0.40 -1.75 16 18 C -0.12 -1.34 9.66 -39.49 -0.38 -1.72 16 19 C -0.08 -0.99 5.08 -104.60 -0.53 -1.52 16 20 C -0.11 -1.26 4.39 -27.93 -0.12 -1.38 16 21 C 0.09 1.19 2.72 -68.78 -0.19 1.00 16 22 H 0.12 1.24 8.05 -51.93 -0.42 0.83 16 23 C 0.48 6.37 7.36 36.01 0.26 6.64 16 24 O -0.48 -8.38 15.26 -18.75 -0.29 -8.66 16 25 O -0.52 -5.00 13.35 -39.24 -0.52 -5.53 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.05 0.98 6.44 -51.93 -0.33 0.65 16 31 H 0.04 0.66 5.42 -51.93 -0.28 0.38 16 32 H 0.09 1.77 6.14 -51.93 -0.32 1.45 16 33 H 0.11 1.56 5.70 -51.93 -0.30 1.27 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.09 1.16 6.74 -51.93 -0.35 0.81 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.41 2.31 9.10 45.56 0.41 2.73 16 LS Contribution 331.56 15.07 5.00 5.00 Total: -1.00 -34.50 331.56 -9.49 -43.99 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.93 Total: 1.87 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -3.41 Total: -18.00 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.31 Total: -35.83 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.81 Total: -14.19 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.50 -9.49 -43.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061449358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.360 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds