Wall clock time and date at job start Tue Mar 31 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00491 * 2 1 4 4 H 1.48497 * 109.47562 * 239.99876 * 3 2 1 5 5 H 1.48501 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47507 * 119.99534 * 3 2 1 7 7 C 1.37881 * 119.99543 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00001 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46898 * 109.47284 * 185.57060 * 11 10 9 13 13 C 1.46636 * 111.00040 * 306.65648 * 12 11 10 14 14 C 1.50630 * 110.49323 * 289.08733 * 13 12 11 15 15 C 1.38732 * 118.42154 * 162.87880 * 14 13 12 16 16 C 1.38024 * 120.37003 * 180.02562 * 15 14 13 17 17 C 1.38254 * 119.87367 * 359.49589 * 16 15 14 18 18 C 1.38039 * 119.82546 * 0.33236 * 17 16 15 19 19 C 1.37826 * 121.84700 * 342.48910 * 14 13 12 20 20 C 1.50714 * 121.66718 * 0.43479 * 19 14 13 21 21 C 1.47155 * 111.00310 * 183.66075 * 12 11 10 22 22 H 1.08999 * 109.63567 * 171.85406 * 21 12 11 23 23 C 1.50702 * 109.63520 * 292.45101 * 21 12 11 24 24 O 1.20823 * 119.99648 * 359.00690 * 23 21 12 25 25 O 1.34223 * 120.00298 * 179.00594 * 23 21 12 26 26 H 0.97000 * 119.99648 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47396 * 59.99558 * 9 7 2 28 28 H 1.09005 * 109.46573 * 299.99160 * 9 7 2 29 29 H 1.09001 * 109.47303 * 59.99571 * 10 9 7 30 30 H 1.09002 * 109.46393 * 299.99749 * 10 9 7 31 31 H 1.09004 * 109.47525 * 65.56942 * 11 10 9 32 32 H 1.09004 * 109.47243 * 305.57359 * 11 10 9 33 33 H 1.09001 * 109.27240 * 49.34974 * 13 12 11 34 34 H 1.08996 * 109.27110 * 168.86175 * 13 12 11 35 35 H 1.07992 * 119.81445 * 359.75108 * 15 14 13 36 36 H 1.07998 * 120.05694 * 179.76360 * 16 15 14 37 37 H 1.08001 * 120.09065 * 180.32168 * 17 16 15 38 38 H 1.07996 * 119.82368 * 179.97438 * 18 17 16 39 39 H 1.08999 * 109.39476 * 103.24017 * 20 19 14 40 40 H 1.09003 * 109.38902 * 222.94698 * 20 19 14 41 41 H 0.96705 * 116.99907 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9872 0.0012 12 7 2.4288 -6.1005 0.1356 13 6 3.4804 -6.0207 -0.8833 14 6 2.9213 -6.3426 -2.2444 15 6 3.6549 -5.9754 -3.3632 16 6 3.1803 -6.2501 -4.6299 17 6 1.9722 -6.9041 -4.7858 18 6 1.2427 -7.2732 -3.6735 19 6 1.7160 -6.9927 -2.4004 20 6 0.8832 -7.4105 -1.2158 21 6 1.7366 -7.3964 0.0528 22 1 2.4701 -8.2014 0.0096 23 6 0.8522 -7.5761 1.2598 24 8 0.8150 -6.7223 2.1139 25 8 0.1060 -8.6846 1.3860 26 1 -0.4849 0.8401 -0.0004 27 1 0.6244 -2.5571 -0.8896 28 1 0.6239 -2.5567 0.8904 29 1 2.8718 -3.6045 0.8905 30 1 2.8716 -3.6044 -0.8895 31 1 0.9298 -5.0896 -0.9343 32 1 0.7808 -5.0026 0.8373 33 1 3.8953 -5.0128 -0.8939 34 1 4.2699 -6.7322 -0.6418 35 1 4.6004 -5.4679 -3.2425 36 1 3.7537 -5.9587 -5.4974 37 1 1.6000 -7.1254 -5.7751 38 1 0.2988 -7.7836 -3.7953 39 1 0.0487 -6.7192 -1.0982 40 1 0.4975 -8.4164 -1.3814 41 1 -0.4451 -8.7551 2.1775 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061449358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:51 Heat of formation + Delta-G solvation = -87.177901 kcal Electronic energy + Delta-G solvation = -23250.396146 eV Core-core repulsion = 19900.771347 eV Total energy + Delta-G solvation = -3349.624800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.13738 -40.64062 -38.44897 -36.99245 -35.93095 -34.23300 -33.25559 -31.94111 -30.59399 -28.68463 -26.30569 -25.85765 -24.25407 -23.15721 -22.47867 -21.96663 -20.06498 -19.05002 -18.49021 -17.84768 -17.26691 -16.98431 -16.72790 -16.47576 -16.11470 -15.90189 -15.68228 -15.25377 -14.71021 -14.41390 -14.30915 -14.02651 -13.67654 -13.64976 -13.54514 -13.13138 -12.85602 -12.68921 -12.58223 -12.47939 -12.37689 -12.25591 -12.16942 -11.95834 -11.49658 -11.45006 -11.19210 -11.11000 -10.55901 -9.66126 -9.49927 -9.41304 -8.20607 -6.32325 0.42431 0.47903 1.20071 1.38739 1.42953 1.50698 1.90872 2.40384 2.81478 2.86218 3.12258 3.67905 3.74008 3.80339 3.92980 4.06550 4.15543 4.21749 4.27171 4.41583 4.49104 4.54521 4.60468 4.65038 4.70289 4.77299 4.85802 4.92679 5.09089 5.12891 5.16384 5.21479 5.47686 5.52713 5.62582 5.63519 5.64642 5.71362 5.82380 5.87295 6.00340 6.12412 6.23819 6.83704 7.03571 7.36804 8.91675 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.004989 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.612198 B = 5611.304789 C = 7042.008824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.088 4.088 11 C 0.062 3.938 12 N -0.517 5.517 13 C 0.087 3.913 14 C -0.122 4.122 15 C -0.123 4.123 16 C -0.127 4.127 17 C -0.127 4.127 18 C -0.123 4.123 19 C -0.093 4.093 20 C -0.099 4.099 21 C 0.093 3.907 22 H 0.148 0.852 23 C 0.487 3.513 24 O -0.532 6.532 25 O -0.506 6.506 26 H 0.264 0.736 27 H -0.013 1.013 28 H -0.016 1.016 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.032 0.968 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.068 0.932 40 H 0.118 0.882 41 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.723 -21.266 -7.069 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.008 4.008 10 C -0.126 4.126 11 C -0.065 4.065 12 N -0.239 5.239 13 C -0.040 4.040 14 C -0.123 4.123 15 C -0.142 4.142 16 C -0.145 4.145 17 C -0.145 4.145 18 C -0.141 4.141 19 C -0.093 4.093 20 C -0.138 4.138 21 C -0.016 4.016 22 H 0.166 0.834 23 C 0.329 3.671 24 O -0.420 6.420 25 O -0.319 6.319 26 H 0.072 0.928 27 H 0.005 0.995 28 H 0.002 0.998 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 5.022 -20.866 -6.666 22.474 hybrid contribution -0.848 1.115 -0.037 1.401 sum 4.174 -19.751 -6.703 21.271 Atomic orbital electron populations 1.70111 1.07958 1.27856 1.51652 1.26034 0.95788 1.03536 0.94604 0.85458 0.78254 0.77792 0.79295 1.18872 1.20737 1.19155 1.21635 0.93546 0.92175 1.50642 0.92021 1.18912 0.94318 0.93329 0.94197 1.21423 0.98028 0.92584 1.00523 1.22138 0.94680 0.90323 0.99405 1.62378 1.13274 1.00561 1.47728 1.21360 0.93905 1.04110 0.84673 1.20477 0.95692 0.99028 0.97117 1.21314 1.00578 1.00005 0.92283 1.21419 0.96868 0.98597 0.97577 1.21409 0.95105 0.98520 0.99451 1.21307 1.00547 1.00710 0.91555 1.19527 0.94991 0.99732 0.95080 1.20952 0.97366 1.04331 0.91104 1.21351 0.95793 0.95188 0.89305 0.83449 1.23317 0.78037 0.78613 0.87173 1.90767 1.64120 1.43778 1.43364 1.84443 1.55638 1.41303 1.50530 0.92764 0.99462 0.99807 0.93043 0.92440 0.95006 0.92024 0.88954 0.86899 0.84821 0.84078 0.83822 0.84335 0.91405 0.86364 0.70999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.23 13.29 21.45 0.28 -58.94 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.54 -32.34 9.11 25.60 0.23 -32.11 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.70 4.97 29.85 0.15 1.85 16 10 C -0.09 -3.94 4.52 30.59 0.14 -3.80 16 11 C 0.06 2.39 4.02 86.30 0.35 2.74 16 12 N -0.52 -15.75 4.57 -880.32 -4.03 -19.77 16 13 C 0.09 2.24 5.26 85.59 0.45 2.69 16 14 C -0.12 -3.07 5.36 -19.87 -0.11 -3.18 16 15 C -0.12 -2.86 9.65 22.34 0.22 -2.64 16 16 C -0.13 -2.61 10.05 22.22 0.22 -2.39 16 17 C -0.13 -2.51 10.05 22.23 0.22 -2.28 16 18 C -0.12 -2.61 9.66 22.33 0.22 -2.39 16 19 C -0.09 -2.24 5.08 -19.85 -0.10 -2.34 16 20 C -0.10 -2.20 4.39 29.82 0.13 -2.07 16 21 C 0.09 2.23 2.72 44.09 0.12 2.35 16 22 H 0.15 2.69 8.05 -2.39 -0.02 2.67 16 23 C 0.49 12.59 7.36 71.24 0.52 13.12 16 24 O -0.53 -18.87 15.26 21.97 0.34 -18.54 16 25 O -0.51 -8.74 13.35 -51.35 -0.69 -9.43 16 26 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 27 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 29 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.06 2.44 6.44 -2.39 -0.02 2.42 16 31 H 0.03 1.24 5.42 -2.39 -0.01 1.23 16 32 H 0.06 2.69 6.14 -2.38 -0.01 2.67 16 33 H 0.09 2.65 5.70 -2.39 -0.01 2.64 16 34 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 39 H 0.07 1.78 6.74 -2.39 -0.02 1.77 16 40 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.43 4.09 9.10 -74.05 -0.67 3.41 16 Total: -1.00 -76.40 331.56 1.53 -74.87 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.37 Total: 14.31 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 3.22 Total: -30.12 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -3.74 Total: -78.72 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.35 Total: -27.96 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -76.40 1.53 -74.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061449358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.311 kcal (2) G-P(sol) polarization free energy of solvation -76.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds