Wall clock time and date at job start Tue Mar 31 2020 06:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86798 * 120.00033 * 2 1 4 4 H 1.48504 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47466 * 300.00011 * 3 2 1 6 6 H 1.48499 * 109.47121 * 60.00488 * 3 2 1 7 7 C 1.37880 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00379 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46908 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46828 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.46909 * 179.97438 * 11 10 9 13 13 C 1.46629 * 110.99968 * 67.00471 * 12 11 10 14 14 C 1.50622 * 110.49536 * 70.88022 * 13 12 11 15 15 C 1.38735 * 118.42945 * 197.40098 * 14 13 12 16 16 C 1.38015 * 120.37850 * 180.43798 * 15 14 13 17 17 C 1.38261 * 119.86990 * 359.97013 * 16 15 14 18 18 C 1.38036 * 119.82430 * 359.89953 * 17 16 15 19 19 C 1.37834 * 121.84702 * 17.64947 * 14 13 12 20 20 C 1.50713 * 121.65927 * 359.38221 * 19 14 13 21 21 C 1.47162 * 110.99886 * 190.00139 * 12 11 10 22 22 H 1.09002 * 109.63143 * 188.11080 * 21 12 11 23 23 C 1.50704 * 109.79399 * 67.61515 * 21 12 11 24 24 O 1.20826 * 119.99534 * 0.88766 * 23 21 12 25 25 O 1.34225 * 119.99852 * 180.88164 * 23 21 12 26 26 H 0.97002 * 120.00132 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46985 * 60.00056 * 9 7 2 28 28 H 1.09006 * 109.46948 * 300.00096 * 9 7 2 29 29 H 1.08998 * 109.47531 * 60.00478 * 10 9 7 30 30 H 1.08997 * 109.47082 * 299.99490 * 10 9 7 31 31 H 1.09004 * 109.47166 * 59.99593 * 11 10 9 32 32 H 1.08996 * 109.47325 * 300.00022 * 11 10 9 33 33 H 1.09004 * 109.27018 * 191.13687 * 13 12 11 34 34 H 1.08998 * 109.27217 * 310.64859 * 13 12 11 35 35 H 1.08002 * 119.81246 * 0.71642 * 15 14 13 36 36 H 1.07997 * 120.06475 * 179.97438 * 16 15 14 37 37 H 1.07997 * 120.08506 * 179.97438 * 17 16 15 38 38 H 1.08003 * 119.82366 * 180.02562 * 18 17 16 39 39 H 1.08991 * 109.39136 * 137.16749 * 20 19 14 40 40 H 1.09001 * 109.38635 * 256.86930 * 20 19 14 41 41 H 0.96707 * 116.99484 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4349 -6.1036 -0.0005 13 6 3.1838 -6.1554 1.2591 14 6 2.2897 -6.6015 2.3862 15 6 2.7019 -6.3646 3.6895 16 6 1.9183 -6.7645 4.7530 17 6 0.7152 -7.4044 4.5195 18 6 0.3023 -7.6384 3.2232 19 6 1.0885 -7.2364 2.1540 20 6 0.5947 -7.5083 0.7563 21 6 1.7491 -7.3837 -0.2385 22 1 2.4487 -8.2067 -0.0925 23 6 1.2109 -7.4204 -1.6457 24 8 1.3928 -6.4835 -2.3866 25 8 0.5296 -8.4939 -2.0758 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8895 30 1 2.8719 -3.6043 -0.8905 31 1 0.8532 -5.0451 -0.8896 32 1 0.8539 -5.0446 0.8903 33 1 4.0113 -6.8574 1.1570 34 1 3.5783 -5.1645 1.4840 35 1 3.6392 -5.8604 3.8730 36 1 2.2443 -6.5779 5.7655 37 1 0.0995 -7.7192 5.3490 38 1 -0.6377 -8.1379 3.0408 39 1 0.1824 -8.5161 0.7079 40 1 -0.1826 -6.7882 0.5007 41 1 0.2043 -8.4715 -2.9863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061449359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:55 Heat of formation + Delta-G solvation = -67.090604 kcal Electronic energy + Delta-G solvation = -23191.576308 eV Core-core repulsion = 19842.822559 eV Total energy + Delta-G solvation = -3348.753749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.08125 -39.65778 -37.37601 -35.96329 -34.03453 -32.86949 -31.77088 -30.77634 -29.49879 -27.00165 -24.96092 -24.65180 -22.61586 -22.25555 -21.50588 -20.27425 -18.94117 -18.00568 -16.93604 -16.45871 -16.08519 -15.91247 -15.45446 -14.99874 -14.94478 -14.58710 -14.36871 -14.04101 -13.64787 -13.17933 -13.14054 -12.66877 -12.51844 -12.28600 -11.92638 -11.73180 -11.60078 -11.42831 -11.38053 -11.10001 -11.05193 -10.72306 -10.65460 -10.45383 -10.11642 -9.52515 -9.27957 -8.98774 -8.79854 -8.59629 -8.28363 -8.24328 -5.93500 -3.94995 1.29706 1.33920 2.24293 2.83443 3.35281 3.42341 3.47067 3.69105 3.98607 4.51972 4.59749 4.66117 4.74848 4.86423 4.93759 5.01862 5.26432 5.31058 5.41746 5.42545 5.47547 5.55993 5.61969 5.72484 5.93480 5.95813 5.98269 6.04648 6.36208 6.38063 6.46675 6.51481 6.52148 6.75062 6.76965 6.95957 7.08591 7.26225 7.31160 7.76241 7.92267 7.94706 8.07659 8.51002 9.12333 9.68501 11.18202 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013264 B = 0.004845 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.432493 B = 5777.423487 C = 7164.691434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.046 3.954 12 N -0.508 5.508 13 C 0.088 3.912 14 C -0.105 4.105 15 C -0.110 4.110 16 C -0.120 4.120 17 C -0.123 4.123 18 C -0.115 4.115 19 C -0.077 4.077 20 C -0.106 4.106 21 C 0.095 3.905 22 H 0.119 0.881 23 C 0.479 3.521 24 O -0.481 6.481 25 O -0.522 6.522 26 H 0.259 0.741 27 H 0.015 0.985 28 H 0.012 0.988 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.993 -20.922 5.189 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.138 4.138 11 C -0.080 4.080 12 N -0.230 5.230 13 C -0.039 4.039 14 C -0.107 4.107 15 C -0.128 4.128 16 C -0.138 4.138 17 C -0.141 4.141 18 C -0.133 4.133 19 C -0.077 4.077 20 C -0.145 4.145 21 C -0.015 4.015 22 H 0.136 0.864 23 C 0.318 3.682 24 O -0.365 6.365 25 O -0.334 6.334 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 2.392 -20.447 4.950 21.174 hybrid contribution -0.512 0.879 0.149 1.028 sum 1.880 -19.568 5.100 20.309 Atomic orbital electron populations 1.69980 1.06068 1.26338 1.51296 1.25024 0.94825 0.99215 0.95482 0.86553 0.80169 0.83898 0.77496 1.19715 1.21043 1.21110 1.21286 0.93059 0.91000 1.49949 0.92627 1.19054 0.94041 0.91364 0.96999 1.21604 0.99123 0.92430 1.00605 1.22517 0.94157 0.90530 1.00803 1.62456 1.27317 1.01065 1.32190 1.21293 0.94926 1.03354 0.84349 1.20437 0.95856 0.98300 0.96102 1.21086 1.00148 0.99753 0.91826 1.21091 0.95022 0.98809 0.98921 1.21050 0.96749 0.99668 0.96598 1.21016 0.99391 1.00633 0.92298 1.19363 0.94705 0.99104 0.94539 1.21014 0.98243 1.03804 0.91439 1.21184 0.96309 0.96209 0.87837 0.86367 1.23164 0.75183 0.79521 0.90291 1.90789 1.53331 1.35955 1.56416 1.84494 1.67581 1.44212 1.37141 0.93168 0.96621 0.96951 0.93612 0.92402 0.90265 0.94606 0.89326 0.87749 0.85797 0.86122 0.86186 0.86172 0.89070 0.89502 0.73188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 7 C -0.51 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 10 C -0.10 -2.19 5.12 -26.73 -0.14 -2.33 16 11 C 0.05 0.86 3.59 -3.82 -0.01 0.85 16 12 N -0.51 -7.76 4.48 -229.60 -1.03 -8.79 16 13 C 0.09 1.17 5.43 -5.16 -0.03 1.14 16 14 C -0.11 -1.37 5.19 -104.62 -0.54 -1.91 16 15 C -0.11 -1.31 9.65 -39.48 -0.38 -1.69 16 16 C -0.12 -1.33 10.05 -39.65 -0.40 -1.73 16 17 C -0.12 -1.32 10.05 -39.65 -0.40 -1.72 16 18 C -0.12 -1.31 9.66 -39.49 -0.38 -1.69 16 19 C -0.08 -0.96 5.06 -104.60 -0.53 -1.49 16 20 C -0.11 -1.24 4.41 -27.93 -0.12 -1.37 16 21 C 0.09 1.19 2.70 -68.77 -0.19 1.00 16 22 H 0.12 1.23 8.05 -51.93 -0.42 0.82 16 23 C 0.48 6.39 7.24 36.01 0.26 6.65 16 24 O -0.48 -8.42 15.37 -18.75 -0.29 -8.71 16 25 O -0.52 -5.03 13.35 -39.24 -0.52 -5.55 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.96 6.38 -51.93 -0.33 0.63 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.08 1.60 5.99 -51.93 -0.31 1.29 16 32 H 0.04 0.68 5.91 -51.93 -0.31 0.37 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 1.48 6.08 -51.93 -0.32 1.17 16 35 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.14 7.03 -51.93 -0.37 0.77 16 41 H 0.41 2.35 9.10 45.56 0.41 2.76 16 LS Contribution 332.57 15.07 5.01 5.01 Total: -1.00 -34.73 332.57 -9.50 -44.23 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -4.98 Total: 1.33 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -3.41 Total: -17.69 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.29 Total: -35.85 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.81 Total: -14.26 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.73 -9.50 -44.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061449359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.859 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds