Wall clock time and date at job start Tue Mar 31 2020 06:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86798 * 120.00033 * 2 1 4 4 H 1.48504 * 109.47302 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47466 * 300.00011 * 3 2 1 6 6 H 1.48499 * 109.47121 * 60.00488 * 3 2 1 7 7 C 1.37880 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00379 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46908 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46828 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.46909 * 179.97438 * 11 10 9 13 13 C 1.46629 * 110.99968 * 67.00471 * 12 11 10 14 14 C 1.50622 * 110.49536 * 70.88022 * 13 12 11 15 15 C 1.38735 * 118.42945 * 197.40098 * 14 13 12 16 16 C 1.38015 * 120.37850 * 180.43798 * 15 14 13 17 17 C 1.38261 * 119.86990 * 359.97013 * 16 15 14 18 18 C 1.38036 * 119.82430 * 359.89953 * 17 16 15 19 19 C 1.37834 * 121.84702 * 17.64947 * 14 13 12 20 20 C 1.50713 * 121.65927 * 359.38221 * 19 14 13 21 21 C 1.47162 * 110.99886 * 190.00139 * 12 11 10 22 22 H 1.09002 * 109.63143 * 188.11080 * 21 12 11 23 23 C 1.50704 * 109.79399 * 67.61515 * 21 12 11 24 24 O 1.20826 * 119.99534 * 0.88766 * 23 21 12 25 25 O 1.34225 * 119.99852 * 180.88164 * 23 21 12 26 26 H 0.97002 * 120.00132 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46985 * 60.00056 * 9 7 2 28 28 H 1.09006 * 109.46948 * 300.00096 * 9 7 2 29 29 H 1.08998 * 109.47531 * 60.00478 * 10 9 7 30 30 H 1.08997 * 109.47082 * 299.99490 * 10 9 7 31 31 H 1.09004 * 109.47166 * 59.99593 * 11 10 9 32 32 H 1.08996 * 109.47325 * 300.00022 * 11 10 9 33 33 H 1.09004 * 109.27018 * 191.13687 * 13 12 11 34 34 H 1.08998 * 109.27217 * 310.64859 * 13 12 11 35 35 H 1.08002 * 119.81246 * 0.71642 * 15 14 13 36 36 H 1.07997 * 120.06475 * 179.97438 * 16 15 14 37 37 H 1.07997 * 120.08506 * 179.97438 * 17 16 15 38 38 H 1.08003 * 119.82366 * 180.02562 * 18 17 16 39 39 H 1.08991 * 109.39136 * 137.16749 * 20 19 14 40 40 H 1.09001 * 109.38635 * 256.86930 * 20 19 14 41 41 H 0.96707 * 116.99484 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4349 -6.1036 -0.0005 13 6 3.1838 -6.1554 1.2591 14 6 2.2897 -6.6015 2.3862 15 6 2.7019 -6.3646 3.6895 16 6 1.9183 -6.7645 4.7530 17 6 0.7152 -7.4044 4.5195 18 6 0.3023 -7.6384 3.2232 19 6 1.0885 -7.2364 2.1540 20 6 0.5947 -7.5083 0.7563 21 6 1.7491 -7.3837 -0.2385 22 1 2.4487 -8.2067 -0.0925 23 6 1.2109 -7.4204 -1.6457 24 8 1.3928 -6.4835 -2.3866 25 8 0.5296 -8.4939 -2.0758 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8895 30 1 2.8719 -3.6043 -0.8905 31 1 0.8532 -5.0451 -0.8896 32 1 0.8539 -5.0446 0.8903 33 1 4.0113 -6.8574 1.1570 34 1 3.5783 -5.1645 1.4840 35 1 3.6392 -5.8604 3.8730 36 1 2.2443 -6.5779 5.7655 37 1 0.0995 -7.7192 5.3490 38 1 -0.6377 -8.1379 3.0408 39 1 0.1824 -8.5161 0.7079 40 1 -0.1826 -6.7882 0.5007 41 1 0.2043 -8.4715 -2.9863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061449359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:55 Heat of formation + Delta-G solvation = -90.040305 kcal Electronic energy + Delta-G solvation = -23192.571481 eV Core-core repulsion = 19842.822559 eV Total energy + Delta-G solvation = -3349.748923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.12130 -40.63415 -38.42772 -36.98768 -35.93841 -34.20348 -33.31247 -31.92727 -30.60292 -28.70112 -26.26001 -25.84531 -24.24363 -23.15522 -22.46641 -22.02135 -20.08916 -19.04428 -18.49051 -17.84548 -17.30037 -16.97629 -16.71900 -16.50000 -15.97381 -15.90040 -15.70672 -15.25082 -14.72461 -14.43027 -14.34485 -14.02755 -13.70747 -13.64364 -13.50185 -13.11750 -12.85323 -12.72182 -12.60975 -12.51063 -12.34961 -12.27534 -12.17958 -11.96170 -11.53112 -11.41605 -11.19931 -11.10137 -10.57283 -9.66727 -9.49633 -9.43756 -8.21199 -6.32599 0.41628 0.47277 1.20301 1.38535 1.39709 1.53370 1.90509 2.40103 2.80620 2.85608 3.11779 3.67513 3.73158 3.79190 3.92604 4.05300 4.13824 4.25229 4.27951 4.41718 4.50466 4.54817 4.60089 4.65046 4.71282 4.77095 4.85024 4.93836 5.04545 5.12387 5.15792 5.21529 5.48585 5.52198 5.62060 5.63045 5.64179 5.72023 5.82595 5.87849 6.00280 6.11773 6.24433 6.83718 7.03454 7.36616 8.91469 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013264 B = 0.004845 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.432493 B = 5777.423487 C = 7164.691434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.030 3.970 10 C -0.085 4.085 11 C 0.068 3.932 12 N -0.518 5.518 13 C 0.090 3.910 14 C -0.123 4.123 15 C -0.123 4.123 16 C -0.127 4.127 17 C -0.127 4.127 18 C -0.123 4.123 19 C -0.093 4.093 20 C -0.099 4.099 21 C 0.093 3.907 22 H 0.148 0.852 23 C 0.486 3.514 24 O -0.531 6.531 25 O -0.506 6.506 26 H 0.264 0.736 27 H -0.017 1.017 28 H -0.011 1.011 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.118 0.882 40 H 0.067 0.933 41 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.836 -22.049 6.293 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.078 0.922 9 C -0.008 4.008 10 C -0.123 4.123 11 C -0.059 4.059 12 N -0.240 5.240 13 C -0.037 4.037 14 C -0.124 4.124 15 C -0.142 4.142 16 C -0.145 4.145 17 C -0.145 4.145 18 C -0.141 4.141 19 C -0.093 4.093 20 C -0.137 4.137 21 C -0.016 4.016 22 H 0.165 0.835 23 C 0.328 3.672 24 O -0.420 6.420 25 O -0.319 6.319 26 H 0.072 0.928 27 H 0.002 0.998 28 H 0.007 0.993 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.136 0.864 40 H 0.085 0.915 41 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 3.231 -21.623 6.054 22.686 hybrid contribution -0.836 1.133 -0.177 1.420 sum 2.395 -20.489 5.876 21.449 Atomic orbital electron populations 1.70115 1.07928 1.27732 1.51820 1.26026 0.95794 1.03513 0.94623 0.85354 0.79091 0.78473 0.77868 1.18463 1.20347 1.20075 1.21690 0.93519 0.92210 1.50392 0.92153 1.18921 0.94320 0.93335 0.94217 1.21345 0.97937 0.92547 1.00453 1.22044 0.93917 0.90470 0.99509 1.62311 1.26705 1.01356 1.33636 1.21315 0.95405 1.03309 0.83689 1.20485 0.96369 0.99249 0.96343 1.21317 1.00959 1.00057 0.91829 1.21421 0.95012 0.98281 0.99741 1.21415 0.96874 0.98965 0.97198 1.21308 0.99962 1.00534 0.92318 1.19530 0.94927 0.99678 0.95158 1.20956 0.97201 1.04733 0.90806 1.21339 0.97251 0.95358 0.87661 0.83454 1.23326 0.74420 0.79248 0.90227 1.90782 1.55529 1.37876 1.57776 1.84443 1.66517 1.42249 1.38713 0.92755 0.99834 0.99312 0.92569 0.93486 0.92244 0.95208 0.86776 0.89265 0.84786 0.84034 0.83797 0.84325 0.86381 0.91506 0.71003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.25 13.29 21.45 0.28 -58.96 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.54 -32.46 9.11 25.60 0.23 -32.23 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.69 4.97 29.85 0.15 1.84 16 10 C -0.08 -3.87 5.12 30.60 0.16 -3.72 16 11 C 0.07 2.63 3.59 86.31 0.31 2.94 16 12 N -0.52 -15.73 4.48 -880.32 -3.94 -19.67 16 13 C 0.09 2.31 5.43 85.58 0.46 2.77 16 14 C -0.12 -3.06 5.19 -19.87 -0.10 -3.17 16 15 C -0.12 -2.79 9.65 22.34 0.22 -2.58 16 16 C -0.13 -2.55 10.05 22.22 0.22 -2.32 16 17 C -0.13 -2.44 10.05 22.23 0.22 -2.22 16 18 C -0.12 -2.57 9.66 22.33 0.22 -2.35 16 19 C -0.09 -2.20 5.06 -19.85 -0.10 -2.30 16 20 C -0.10 -2.17 4.41 29.82 0.13 -2.04 16 21 C 0.09 2.23 2.70 44.09 0.12 2.35 16 22 H 0.15 2.68 8.05 -2.39 -0.02 2.66 16 23 C 0.49 12.63 7.24 71.24 0.52 13.14 16 24 O -0.53 -19.00 15.37 21.96 0.34 -18.66 16 25 O -0.51 -8.79 13.35 -51.37 -0.69 -9.48 16 26 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 27 H -0.02 -1.05 8.14 -2.39 -0.02 -1.06 16 28 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 29 H 0.06 2.42 6.38 -2.39 -0.02 2.40 16 30 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.06 2.53 5.99 -2.38 -0.01 2.52 16 32 H 0.03 1.17 5.91 -2.39 -0.01 1.16 16 33 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.09 2.53 6.08 -2.39 -0.01 2.51 16 35 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 39 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 1.75 7.03 -2.39 -0.02 1.73 16 41 H 0.43 4.16 9.10 -74.05 -0.67 3.48 16 Total: -1.00 -76.81 332.57 1.61 -75.21 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.37 Total: 13.24 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 3.22 Total: -29.56 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -3.66 Total: -78.63 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.35 Total: -28.14 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -76.81 1.61 -75.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061449359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.831 kcal (2) G-P(sol) polarization free energy of solvation -76.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds